| Definition | Bradyrhizobium sp. ORS278 chromosome, complete genome. |
|---|---|
| Accession | NC_009445 |
| Length | 7,456,587 |
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The map label for this gene is cadA [H]
Identifier: 146343094
GI number: 146343094
Start: 6529640
End: 6531934
Strand: Reverse
Name: cadA [H]
Synonym: BRADO6289
Alternate gene names: 146343094
Gene position: 6531934-6529640 (Counterclockwise)
Preceding gene: 146343095
Following gene: 146343093
Centisome position: 87.6
GC content: 70.28
Gene sequence:
>2295_bases ATGTTCGAACGCATCCTGCGATGGACCCTCGTCGCAATCGCCGTCGCGGGCCTCGCCGCGGGCGGCCTTGCGTATGCGGT CGGCCGATCCGAGCTTGCCGGGATCGCCTTCACCGCCTCCACCGTTCCGGTCATCGCCGGCCTGATCGTCTCGATCGTCC GCGATGTCCTGGCCGGCCGTGTCGGCGTCGACGCGATCGCGCTGGTGTCGATGAGCGCGGCCATCGTGCTCGGCGAGCCG CTGGCGGGCGCCGTGGTGGCGCTGATGTATTCCGGCGGGAACGTGCTCGAGGACATCGCGGTCGCGCGTGCCGAGCACGA TCTGCGCGCACTGGTCGACCGGGCGCCACGCCTGGCGCACCGCTGGCGGGATGATCGCATCGAGGATGTCGAGGTCGCCG ACGTCGCCGTTGGCGACCGGCTGATGGTCCGGGCCGGCGAGATCGTACCGGTGGACGGCGTGGTCGAGACGGTCCTGGCG GTGATCGATGAATCGGCGCTGACGGGCGAGCCGATCCCAGTGTCGAAGACGCGGGGCATGGCGATCCTGTCGGGCTCGCT GAACACCGGTGAGACGTTCGAGCTGTCGGTTACCGCGACCGCGGGGGAGAGCACCTATGCCGGCATCGTCAAGCTGGTGA CCGCGGCGCAGACCGCGAAGGCGCCGTTCGTGCGACTCGCCGATCGCTATGCGCTGATCTTCCTGCCGGTGAGCCTGGCG ATCGCAGCCGCGGCCTGGTTTGCCTCCGGCGATTTGATCCGGGCCCTTGCGGTGATGGTCGCTGCGACGCCGTGTCCGCT GATCCTGGCGGCGCCGGTTGCCTTTATCGCCGGGGTGGCGCAGGCCGCGCGCAGCGGCATCCTGGTGAAGGGCGGCGGCA AGCTGGAAGCGCTCGCGCGGGCGCATACCGTGCTGTTCGACAAGACCGGCACGTTGACCGTCGGCGGTGCGCGGTTGCTC TCTGTGGAGGCGGCGCCCGGCGAGGATGCTGACAGCGTGCTGCTGCTCGGCGCCTCGCTGGAGCAGGCCTCCCACCATGT CCTGGCGCATGCCATTGTCGAGGCCGGCCAGGCCCGAGGGCTCAAGCTCAAGGTCCCGGAGCGTGTCAGGGAGGCGATGG GCTCGGGCCTCGAGGGCGTCATCGACGGCCGCCGCATCAGCGCCGGTTCGCCTGACCTGATCCTCGGCAATCACGCCCCG CCGCCGTGGGCCGGACGCGCCATCCGCCGCGCGTCCTGGCGCTCGGCGCTGATCGTGCTCGTCGCCGTCGATGGCAAACC GATCGGCGCGCTGTTGCTGGCAGATGAATTGCGCGCCGACACGCCGCGCGCGATCCGCTGGCTGCGCGAGGCCGGTATCG CCCGCATGGTCATGGTGACCGGCGACCGCGCCGCTGCAGCGCAGGCGATCGGCGCGGCGCTCGATCTCGATGCGGTTCTG GCCGATCGCGTGCCATCGGATAAGGTCGATGCCGTCAGGAGCGAGCAGCGGCTTCACCCGACCATCATGGTTGGCGACGG CATCAACGATGCGCCGGCGCTCGCCTCGGCCGATGTCGGCATCGCGCTCGGCGCCCGCGGCGCCAGCGCCTCGTCGGAGG CGGCTGATGTGGTCATTCTCGCCGACCGGCTCGATCGCGTCGGTGAGGCGATCGTGATCGCGCAGCGTGCGCGGAGGATC GCGCTGGAGAGCATCATCGCCGGCATGGCGCTGTCATTCATCGCGATGGGCGCCGCGGCATTCGGCTTGCTGCAGCCGGT GCCTGCTGCGCTGGTGCAGGAGGCGATCGATGTCGCCGTGATCCTCAACGCGCTGCGGGCGCTGCTGCCGGCCGGCCGGG CGCGGACGGGCCGGATCACGGTGGAGGACGGTCAGGGCCTGCGGCACGATCATCAGGCGCTGCTGCGCGGACTGGATCGG CTGCGCGCGATCGTCGATACGCTCGATGAGGCCCCGCCGGAGCGAGCGGTGTCGCTGATCGTCGAAGCCAATGCCGTTGT GCAAGACCAGGTCGTCGCACATGAGCGCGATGACGAAGGCTCGGTCTATCCGCGGCTGGCTCGGCTGCTGCAGGACAGCC ACGGCCTGTCCGCGATGAGCCGGGCGCATCGCGAGATCCTGCATCTGGCGCGCCTGCTTGGGCGGGTGGTCGAGGACCTG CCGTCCGAGAAGGTCGACCGCTATCTGATCCGCGATGCCCAGCGGGTGATCGAGGCAATCGAGACGCTGGTGCGCATGCA TACCGCGCAGGAGGACGACATCTACGAGGCCGTGGCGGCGCGCTCGGCCGCTTGA
Upstream 100 bases:
>100_bases ACCGCCTGACGCGATGATCCGCCGCATCAGCGTTGATTTCGCTCAAGCGTCCGAGGCGCGGTCGCGGCGATAGTGCCGGC GCAATCCGGATCTGATCGCC
Downstream 100 bases:
>100_bases TTTGGCGCAAGTCGGACCACAATGATCGGTATCATAATCATTCTAAAGAATGAAGCCTGATGGTGTGGGACGGGGGCTGC TGGACCAAGCGGCGATTGCG
Product: putative cation-transporting ATPase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 764; Mature: 764
Protein sequence:
>764_residues MFERILRWTLVAIAVAGLAAGGLAYAVGRSELAGIAFTASTVPVIAGLIVSIVRDVLAGRVGVDAIALVSMSAAIVLGEP LAGAVVALMYSGGNVLEDIAVARAEHDLRALVDRAPRLAHRWRDDRIEDVEVADVAVGDRLMVRAGEIVPVDGVVETVLA VIDESALTGEPIPVSKTRGMAILSGSLNTGETFELSVTATAGESTYAGIVKLVTAAQTAKAPFVRLADRYALIFLPVSLA IAAAAWFASGDLIRALAVMVAATPCPLILAAPVAFIAGVAQAARSGILVKGGGKLEALARAHTVLFDKTGTLTVGGARLL SVEAAPGEDADSVLLLGASLEQASHHVLAHAIVEAGQARGLKLKVPERVREAMGSGLEGVIDGRRISAGSPDLILGNHAP PPWAGRAIRRASWRSALIVLVAVDGKPIGALLLADELRADTPRAIRWLREAGIARMVMVTGDRAAAAQAIGAALDLDAVL ADRVPSDKVDAVRSEQRLHPTIMVGDGINDAPALASADVGIALGARGASASSEAADVVILADRLDRVGEAIVIAQRARRI ALESIIAGMALSFIAMGAAAFGLLQPVPAALVQEAIDVAVILNALRALLPAGRARTGRITVEDGQGLRHDHQALLRGLDR LRAIVDTLDEAPPERAVSLIVEANAVVQDQVVAHERDDEGSVYPRLARLLQDSHGLSAMSRAHREILHLARLLGRVVEDL PSEKVDRYLIRDAQRVIEAIETLVRMHTAQEDDIYEAVAARSAA
Sequences:
>Translated_764_residues MFERILRWTLVAIAVAGLAAGGLAYAVGRSELAGIAFTASTVPVIAGLIVSIVRDVLAGRVGVDAIALVSMSAAIVLGEP LAGAVVALMYSGGNVLEDIAVARAEHDLRALVDRAPRLAHRWRDDRIEDVEVADVAVGDRLMVRAGEIVPVDGVVETVLA VIDESALTGEPIPVSKTRGMAILSGSLNTGETFELSVTATAGESTYAGIVKLVTAAQTAKAPFVRLADRYALIFLPVSLA IAAAAWFASGDLIRALAVMVAATPCPLILAAPVAFIAGVAQAARSGILVKGGGKLEALARAHTVLFDKTGTLTVGGARLL SVEAAPGEDADSVLLLGASLEQASHHVLAHAIVEAGQARGLKLKVPERVREAMGSGLEGVIDGRRISAGSPDLILGNHAP PPWAGRAIRRASWRSALIVLVAVDGKPIGALLLADELRADTPRAIRWLREAGIARMVMVTGDRAAAAQAIGAALDLDAVL ADRVPSDKVDAVRSEQRLHPTIMVGDGINDAPALASADVGIALGARGASASSEAADVVILADRLDRVGEAIVIAQRARRI ALESIIAGMALSFIAMGAAAFGLLQPVPAALVQEAIDVAVILNALRALLPAGRARTGRITVEDGQGLRHDHQALLRGLDR LRAIVDTLDEAPPERAVSLIVEANAVVQDQVVAHERDDEGSVYPRLARLLQDSHGLSAMSRAHREILHLARLLGRVVEDL PSEKVDRYLIRDAQRVIEAIETLVRMHTAQEDDIYEAVAARSAA >Mature_764_residues MFERILRWTLVAIAVAGLAAGGLAYAVGRSELAGIAFTASTVPVIAGLIVSIVRDVLAGRVGVDAIALVSMSAAIVLGEP LAGAVVALMYSGGNVLEDIAVARAEHDLRALVDRAPRLAHRWRDDRIEDVEVADVAVGDRLMVRAGEIVPVDGVVETVLA VIDESALTGEPIPVSKTRGMAILSGSLNTGETFELSVTATAGESTYAGIVKLVTAAQTAKAPFVRLADRYALIFLPVSLA IAAAAWFASGDLIRALAVMVAATPCPLILAAPVAFIAGVAQAARSGILVKGGGKLEALARAHTVLFDKTGTLTVGGARLL SVEAAPGEDADSVLLLGASLEQASHHVLAHAIVEAGQARGLKLKVPERVREAMGSGLEGVIDGRRISAGSPDLILGNHAP PPWAGRAIRRASWRSALIVLVAVDGKPIGALLLADELRADTPRAIRWLREAGIARMVMVTGDRAAAAQAIGAALDLDAVL ADRVPSDKVDAVRSEQRLHPTIMVGDGINDAPALASADVGIALGARGASASSEAADVVILADRLDRVGEAIVIAQRARRI ALESIIAGMALSFIAMGAAAFGLLQPVPAALVQEAIDVAVILNALRALLPAGRARTGRITVEDGQGLRHDHQALLRGLDR LRAIVDTLDEAPPERAVSLIVEANAVVQDQVVAHERDDEGSVYPRLARLLQDSHGLSAMSRAHREILHLARLLGRVVEDL PSEKVDRYLIRDAQRVIEAIETLVRMHTAQEDDIYEAVAARSAA
Specific function: Couples the hydrolysis of ATP with the transport of cadmium, zinc and cobalt out of the cell. Does not seem to transport copper [H]
COG id: COG2217
COG function: function code P; Cation transport ATPase
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 HMA domain [H]
Homologues:
Organism=Homo sapiens, GI55743071, Length=549, Percent_Identity=30.2367941712204, Blast_Score=184, Evalue=3e-46, Organism=Homo sapiens, GI55743073, Length=519, Percent_Identity=30.4431599229287, Blast_Score=172, Evalue=9e-43, Organism=Homo sapiens, GI115529486, Length=263, Percent_Identity=32.6996197718631, Blast_Score=119, Evalue=1e-26, Organism=Escherichia coli, GI1789879, Length=588, Percent_Identity=33.5034013605442, Blast_Score=233, Evalue=4e-62, Organism=Escherichia coli, GI1786691, Length=620, Percent_Identity=31.6129032258064, Blast_Score=208, Evalue=9e-55, Organism=Escherichia coli, GI1786914, Length=456, Percent_Identity=30.0438596491228, Blast_Score=107, Evalue=4e-24, Organism=Caenorhabditis elegans, GI17556548, Length=491, Percent_Identity=27.2912423625255, Blast_Score=154, Evalue=2e-37, Organism=Saccharomyces cerevisiae, GI6320475, Length=544, Percent_Identity=28.8602941176471, Blast_Score=193, Evalue=9e-50, Organism=Saccharomyces cerevisiae, GI6319772, Length=487, Percent_Identity=26.4887063655031, Blast_Score=153, Evalue=1e-37, Organism=Saccharomyces cerevisiae, GI6325221, Length=521, Percent_Identity=26.679462571977, Blast_Score=92, Evalue=5e-19, Organism=Saccharomyces cerevisiae, GI6321430, Length=521, Percent_Identity=25.9117082533589, Blast_Score=90, Evalue=2e-18, Organism=Drosophila melanogaster, GI221329854, Length=258, Percent_Identity=36.8217054263566, Blast_Score=119, Evalue=1e-26,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR008250 - InterPro: IPR001366 - InterPro: IPR006404 - InterPro: IPR006416 - InterPro: IPR001757 - InterPro: IPR018303 - InterPro: IPR005834 - InterPro: IPR023214 - InterPro: IPR017969 - InterPro: IPR006121 [H]
Pfam domain/function: PF00122 E1-E2_ATPase; PF00403 HMA; PF00702 Hydrolase [H]
EC number: =3.6.3.3; =3.6.3.5 [H]
Molecular weight: Translated: 79762; Mature: 79762
Theoretical pI: Translated: 5.79; Mature: 5.79
Prosite motif: PS00154 ATPASE_E1_E2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.1 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 0.1 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MFERILRWTLVAIAVAGLAAGGLAYAVGRSELAGIAFTASTVPVIAGLIVSIVRDVLAGR CHHHHHHHHHHHHHHHHHHHCHHHHHHCHHHHCCEEEEHHHHHHHHHHHHHHHHHHHHCC VGVDAIALVSMSAAIVLGEPLAGAVVALMYSGGNVLEDIAVARAEHDLRALVDRAPRLAH CCHHHHHHHHHHHHHEECCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCHHHHH RWRDDRIEDVEVADVAVGDRLMVRAGEIVPVDGVVETVLAVIDESALTGEPIPVSKTRGM HHCCCCCCCCEEHHHCCCCEEEEECCCEEECHHHHHHHHHHHHCCCCCCCCCCCCCCCCE AILSGSLNTGETFELSVTATAGESTYAGIVKLVTAAQTAKAPFVRLADRYALIFLPVSLA EEEECCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHHHCCCHHHHHCCCEEEEHHHHHH IAAAAWFASGDLIRALAVMVAATPCPLILAAPVAFIAGVAQAARSGILVKGGGKLEALAR HHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCEEEECCCCHHHHHH AHTVLFDKTGTLTVGGARLLSVEAAPGEDADSVLLLGASLEQASHHVLAHAIVEAGQARG HHHHEEECCCCEEECCEEEEEEECCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHCCCC LKLKVPERVREAMGSGLEGVIDGRRISAGSPDLILGNHAPPPWAGRAIRRASWRSALIVL CEEECCHHHHHHHCCCCCCCCCCCEECCCCCCEEECCCCCCCCHHHHHHHHHCCCEEEEE VAVDGKPIGALLLADELRADTPRAIRWLREAGIARMVMVTGDRAAAAQAIGAALDLDAVL EEECCCCCCHHEEHHHHCCCCHHHHHHHHHCCCEEEEEEECCHHHHHHHHHHHHHHHHHH ADRVPSDKVDAVRSEQRLHPTIMVGDGINDAPALASADVGIALGARGASASSEAADVVIL HCCCCCCHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCEEEE ADRLDRVGEAIVIAQRARRIALESIIAGMALSFIAMGAAAFGLLQPVPAALVQEAIDVAV HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH ILNALRALLPAGRARTGRITVEDGQGLRHDHQALLRGLDRLRAIVDTLDEAPPERAVSLI HHHHHHHHCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH VEANAVVQDQVVAHERDDEGSVYPRLARLLQDSHGLSAMSRAHREILHLARLLGRVVEDL HHCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHC PSEKVDRYLIRDAQRVIEAIETLVRMHTAQEDDIYEAVAARSAA CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCC >Mature Secondary Structure MFERILRWTLVAIAVAGLAAGGLAYAVGRSELAGIAFTASTVPVIAGLIVSIVRDVLAGR CHHHHHHHHHHHHHHHHHHHCHHHHHHCHHHHCCEEEEHHHHHHHHHHHHHHHHHHHHCC VGVDAIALVSMSAAIVLGEPLAGAVVALMYSGGNVLEDIAVARAEHDLRALVDRAPRLAH CCHHHHHHHHHHHHHEECCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCHHHHH RWRDDRIEDVEVADVAVGDRLMVRAGEIVPVDGVVETVLAVIDESALTGEPIPVSKTRGM HHCCCCCCCCEEHHHCCCCEEEEECCCEEECHHHHHHHHHHHHCCCCCCCCCCCCCCCCE AILSGSLNTGETFELSVTATAGESTYAGIVKLVTAAQTAKAPFVRLADRYALIFLPVSLA EEEECCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHHHCCCHHHHHCCCEEEEHHHHHH IAAAAWFASGDLIRALAVMVAATPCPLILAAPVAFIAGVAQAARSGILVKGGGKLEALAR HHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCEEEECCCCHHHHHH AHTVLFDKTGTLTVGGARLLSVEAAPGEDADSVLLLGASLEQASHHVLAHAIVEAGQARG HHHHEEECCCCEEECCEEEEEEECCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHCCCC LKLKVPERVREAMGSGLEGVIDGRRISAGSPDLILGNHAPPPWAGRAIRRASWRSALIVL CEEECCHHHHHHHCCCCCCCCCCCEECCCCCCEEECCCCCCCCHHHHHHHHHCCCEEEEE VAVDGKPIGALLLADELRADTPRAIRWLREAGIARMVMVTGDRAAAAQAIGAALDLDAVL EEECCCCCCHHEEHHHHCCCCHHHHHHHHHCCCEEEEEEECCHHHHHHHHHHHHHHHHHH ADRVPSDKVDAVRSEQRLHPTIMVGDGINDAPALASADVGIALGARGASASSEAADVVIL HCCCCCCHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCEEEE ADRLDRVGEAIVIAQRARRIALESIIAGMALSFIAMGAAAFGLLQPVPAALVQEAIDVAV HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH ILNALRALLPAGRARTGRITVEDGQGLRHDHQALLRGLDRLRAIVDTLDEAPPERAVSLI HHHHHHHHCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH VEANAVVQDQVVAHERDDEGSVYPRLARLLQDSHGLSAMSRAHREILHLARLLGRVVEDL HHCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHC PSEKVDRYLIRDAQRVIEAIETLVRMHTAQEDDIYEAVAARSAA CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9384377 [H]