| Definition | Bradyrhizobium sp. ORS278 chromosome, complete genome. |
|---|---|
| Accession | NC_009445 |
| Length | 7,456,587 |
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The map label for this gene is ifcA [H]
Identifier: 146342348
GI number: 146342348
Start: 5685033
End: 5686412
Strand: Reverse
Name: ifcA [H]
Synonym: BRADO5504
Alternate gene names: 146342348
Gene position: 5686412-5685033 (Counterclockwise)
Preceding gene: 146342349
Following gene: 146342342
Centisome position: 76.26
GC content: 70.14
Gene sequence:
>1380_bases ATGAGTTCGGTCGAGACGATCGATCGCACGCCCGAGCTTGCCGTCGACTGCCTGATCATCGGCGCGGGTGCGGCTGGGCT CGTCGCTGCGCTGTCGGCGGCCGAGAGTGGCGAGAGCGTGCTGGTGCTGGAACGCGATGCCGTACCGCAGGGCTCGACCG CGCTGTCGGCCGGACTCATTCCGGCTGCCGGCACGCGCTGGCAGGCGGCGCTCGGCATCGACGACAGTCCCGCGCGCTTC GCGGCCGACATTATGCACAAGGCGCATGATGAGCCGGATGCGGCGCTGGTGCAGCTCGTCACCACGACCATCGGCCCGAC GCTCGAATGGCTCGCGGACCGGCATCGGCTGCCATTCTCGCTGGTCGACAATTTCAGCTATCCCGGCCACTCGCGCTATC GCATGCATGGGCTTCCGAGCCGCGCCGGACGCGAGCTTATCGACCGGCTGCGCACGGCCGCCGAGGCCGCCGGAATCGAT ATCCTCTGCGACGCGCATGCGGCGTCCTTGCTGCTCGACCGCGCGCAGCGCGTCGTCGGTGTGCGCTTCGCGCGGCCCGA CGGCGGCAGCGACGAGATCGGCTGCCGCCGCCTGATCCTCGCCTGCAGCGGCTACGGCGGCAATCCCGCGCTGGTCGCCC GGCACATCCCGCAAATGGCGAGCGCGACCTATTTCGGCCATGTCGGCAACCAGGGCGATGCGCTGACGTGGGGCGAGCAG CTCCGCGCGGCGACGAGGCATCTCGGCGGGCACCAGGGCCACGGCTCGGTCGCGCATCCCGCAGGCATCCTCATCAGCTG GGCGACCATCACCGAGGGCGGTTTCCAGGTGAATTCCGACGGCCAGCGCTTCTCGAACGAGGCATCGGGCTATTCCGAGC AGGCGGCCCACGTCCTGGCGCAGCCGGAGGGCATCGCCTGGACGATCTTTGATGCGCGCATCGCTGGCATTGCCGCGCAG TTCGAGGATTTTCGGAATGCGATCGCGCATGGCGCGGTGCTGGAGGGGTACGATATCGGGAGCCTCGCAGCCGCGATGCG CGTCCCGGCCGATGTCCTTGCGCGCACATGCGAGGAAGTCAGCGACGCCAAGGCCCAGCATCGCACCGATCGTTTCGGCC GCAGCTTCGCCGGCGTGCCGCAACTCGCGCCACCCTATCGCGCGGTCAAGGTCACCGGCGCGCTGTTTCACACCCAGGGC GGCCTCGTCATCGACGAGCGGGCGCGCGTCGTGCGCAACGACGGCACCGCGATCGACAATCTGTTCGCCGTCGGTGGCGC GGCTTGCGGCGTCTCCGGCGCGGACGCCGCCGGCTATCTCTCCGGCAACGGCCTGCTCACCGCCGTCGCGCTTGGCCGCG TCGCGGGGCTGGCGCGCTGA
Upstream 100 bases:
>100_bases CCGCGTTCACGGCGGAGACGCATGCGACCGCGATCGCCGCGCTGAAGCCGGTGTGCCGCGTCACCTCGATCGCGGAGGCG ATCAAGGAATTGGCCGCGTC
Downstream 100 bases:
>100_bases GCTATCGCCGCGCGGCCTGCCAACGCAAGAGGCGGCTTTCGGCGGCGCCCATTGCGACCGACGTGACGTAGCCGATGGCG CCGAGCAACAGCACGCCGGC
Product: putative fumarate reductase/succinate dehydrogenase flavoprotein
Products: NA
Alternate protein names: Fe(3+)-induced flavocytochrome C3; Ifc3; Iron(III)-induced flavocytochrome C3 [H]
Number of amino acids: Translated: 459; Mature: 458
Protein sequence:
>459_residues MSSVETIDRTPELAVDCLIIGAGAAGLVAALSAAESGESVLVLERDAVPQGSTALSAGLIPAAGTRWQAALGIDDSPARF AADIMHKAHDEPDAALVQLVTTTIGPTLEWLADRHRLPFSLVDNFSYPGHSRYRMHGLPSRAGRELIDRLRTAAEAAGID ILCDAHAASLLLDRAQRVVGVRFARPDGGSDEIGCRRLILACSGYGGNPALVARHIPQMASATYFGHVGNQGDALTWGEQ LRAATRHLGGHQGHGSVAHPAGILISWATITEGGFQVNSDGQRFSNEASGYSEQAAHVLAQPEGIAWTIFDARIAGIAAQ FEDFRNAIAHGAVLEGYDIGSLAAAMRVPADVLARTCEEVSDAKAQHRTDRFGRSFAGVPQLAPPYRAVKVTGALFHTQG GLVIDERARVVRNDGTAIDNLFAVGGAACGVSGADAAGYLSGNGLLTAVALGRVAGLAR
Sequences:
>Translated_459_residues MSSVETIDRTPELAVDCLIIGAGAAGLVAALSAAESGESVLVLERDAVPQGSTALSAGLIPAAGTRWQAALGIDDSPARF AADIMHKAHDEPDAALVQLVTTTIGPTLEWLADRHRLPFSLVDNFSYPGHSRYRMHGLPSRAGRELIDRLRTAAEAAGID ILCDAHAASLLLDRAQRVVGVRFARPDGGSDEIGCRRLILACSGYGGNPALVARHIPQMASATYFGHVGNQGDALTWGEQ LRAATRHLGGHQGHGSVAHPAGILISWATITEGGFQVNSDGQRFSNEASGYSEQAAHVLAQPEGIAWTIFDARIAGIAAQ FEDFRNAIAHGAVLEGYDIGSLAAAMRVPADVLARTCEEVSDAKAQHRTDRFGRSFAGVPQLAPPYRAVKVTGALFHTQG GLVIDERARVVRNDGTAIDNLFAVGGAACGVSGADAAGYLSGNGLLTAVALGRVAGLAR >Mature_458_residues SSVETIDRTPELAVDCLIIGAGAAGLVAALSAAESGESVLVLERDAVPQGSTALSAGLIPAAGTRWQAALGIDDSPARFA ADIMHKAHDEPDAALVQLVTTTIGPTLEWLADRHRLPFSLVDNFSYPGHSRYRMHGLPSRAGRELIDRLRTAAEAAGIDI LCDAHAASLLLDRAQRVVGVRFARPDGGSDEIGCRRLILACSGYGGNPALVARHIPQMASATYFGHVGNQGDALTWGEQL RAATRHLGGHQGHGSVAHPAGILISWATITEGGFQVNSDGQRFSNEASGYSEQAAHVLAQPEGIAWTIFDARIAGIAAQF EDFRNAIAHGAVLEGYDIGSLAAAMRVPADVLARTCEEVSDAKAQHRTDRFGRSFAGVPQLAPPYRAVKVTGALFHTQGG LVIDERARVVRNDGTAIDNLFAVGGAACGVSGADAAGYLSGNGLLTAVALGRVAGLAR
Specific function: Catalyzes unidirectional fumarate reduction using artificial electron donors such as methyl viologen. The physiological reductant is unknown [H]
COG id: COG1053
COG function: function code C; Succinate dehydrogenase/fumarate reductase, flavoprotein subunit
Gene ontology:
Cell location: Periplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 cytochrome c domain [H]
Homologues:
Organism=Caenorhabditis elegans, GI71986328, Length=471, Percent_Identity=27.6008492569002, Blast_Score=107, Evalue=2e-23,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003953 - InterPro: IPR013027 - InterPro: IPR010960 - InterPro: IPR011031 [H]
Pfam domain/function: PF00890 FAD_binding_2 [H]
EC number: =1.3.99.1 [H]
Molecular weight: Translated: 47849; Mature: 47718
Theoretical pI: Translated: 6.30; Mature: 6.30
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSSVETIDRTPELAVDCLIIGAGAAGLVAALSAAESGESVLVLERDAVPQGSTALSAGLI CCCCHHHCCCCCCEEEEEEECCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHCCCC PAAGTRWQAALGIDDSPARFAADIMHKAHDEPDAALVQLVTTTIGPTLEWLADRHRLPFS CCCCCCEEEEECCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHCCCCCHH LVDNFSYPGHSRYRMHGLPSRAGRELIDRLRTAAEAAGIDILCDAHAASLLLDRAQRVVG HHHCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHHHE VRFARPDGGSDEIGCRRLILACSGYGGNPALVARHIPQMASATYFGHVGNQGDALTWGEQ EEEECCCCCCCCHHHHEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHH LRAATRHLGGHQGHGSVAHPAGILISWATITEGGFQVNSDGQRFSNEASGYSEQAAHVLA HHHHHHHCCCCCCCCCCCCCCCEEEEEEEECCCCEEECCCCHHHCCCCCCHHHHHHHHHC QPEGIAWTIFDARIAGIAAQFEDFRNAIAHGAVLEGYDIGSLAAAMRVPADVLARTCEEV CCCCCEEEEEHHHHHHHHHHHHHHHHHHHCCCEECCCCHHHHHHHHHCCHHHHHHHHHHH SDAKAQHRTDRFGRSFAGVPQLAPPYRAVKVTGALFHTQGGLVIDERARVVRNDGTAIDN HHHHHHHHHHHHCCHHCCCCCCCCCCEEEEEEEEEEECCCCEEECCCHHHHHCCCCHHHH LFAVGGAACGVSGADAAGYLSGNGLLTAVALGRVAGLAR HHHHCCHHCCCCCCCCCCEECCCCHHHHHHHHHHHHCCC >Mature Secondary Structure SSVETIDRTPELAVDCLIIGAGAAGLVAALSAAESGESVLVLERDAVPQGSTALSAGLI CCCHHHCCCCCCEEEEEEECCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHCCCC PAAGTRWQAALGIDDSPARFAADIMHKAHDEPDAALVQLVTTTIGPTLEWLADRHRLPFS CCCCCCEEEEECCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHCCCCCHH LVDNFSYPGHSRYRMHGLPSRAGRELIDRLRTAAEAAGIDILCDAHAASLLLDRAQRVVG HHHCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHHHE VRFARPDGGSDEIGCRRLILACSGYGGNPALVARHIPQMASATYFGHVGNQGDALTWGEQ EEEECCCCCCCCHHHHEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHH LRAATRHLGGHQGHGSVAHPAGILISWATITEGGFQVNSDGQRFSNEASGYSEQAAHVLA HHHHHHHCCCCCCCCCCCCCCCEEEEEEEECCCCEEECCCCHHHCCCCCCHHHHHHHHHC QPEGIAWTIFDARIAGIAAQFEDFRNAIAHGAVLEGYDIGSLAAAMRVPADVLARTCEEV CCCCCEEEEEHHHHHHHHHHHHHHHHHHHCCCEECCCCHHHHHHHHHCCHHHHHHHHHHH SDAKAQHRTDRFGRSFAGVPQLAPPYRAVKVTGALFHTQGGLVIDERARVVRNDGTAIDN HHHHHHHHHHHHCCHHCCCCCCCCCCEEEEEEEEEEECCCCEEECCCHHHHHCCCCHHHH LFAVGGAACGVSGADAAGYLSGNGLLTAVALGRVAGLAR HHHHCCHHCCCCCCCCCCEECCCCHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 10455032; 10581549 [H]