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The map label for this gene is nifU [H]

Identifier: 146342270

GI number: 146342270

Start: 5614883

End: 5615173

Strand: Reverse

Name: nifU [H]

Synonym: BRADO5424

Alternate gene names: 146342270

Gene position: 5615173-5614883 (Counterclockwise)

Preceding gene: 146342271

Following gene: 146342269

Centisome position: 75.3

GC content: 64.95

Gene sequence:

>291_bases
ATGCTGGTCGAAACCCAGGGCGTCGTCGAAGCGCCGGCTCAGATGAGCGAACGCGAGCGGATCATCCGCGCCGTGATCGA
GGAGGTTCGTCCGAACCTCAAGCGCGACGGCGGCGATTGCGAGCTCGTCGAGATCGACGGCAACAAGATCATGGTCAAGC
TCGCCGGCGCCTGCATCTTCTGCAAGCTCGCCAGCGCGACCCTGGAAGGCATCCAGGCCCGCATGATCGAGAAGCTCGGC
GAGTTCGTCCGTCTGGTTCCGGTGGCCGGCGCTGCGAAGGCGCGGCATTAA

Upstream 100 bases:

>100_bases
AAGGCTCCGGCTTCACCTTCGAGAACCCCAACGCCAAGTCGAGCTGCGGTTGCGGCAAGTCCTTCGCTTGACCCCTTCAA
CATCTGAAAGAGCTGATATC

Downstream 100 bases:

>100_bases
GGAGCGGCCGTGCGTCCGGTGTACCTCGACAACAACGCCACGACGCGCGTCGACCCCGAGGTCGTCGCGGCGATGTTGCC
GTTCTTCACGGACCAGTTCG

Product: putative nifU protein (C-terminal fragment)

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 96; Mature: 96

Protein sequence:

>96_residues
MLVETQGVVEAPAQMSERERIIRAVIEEVRPNLKRDGGDCELVEIDGNKIMVKLAGACIFCKLASATLEGIQARMIEKLG
EFVRLVPVAGAAKARH

Sequences:

>Translated_96_residues
MLVETQGVVEAPAQMSERERIIRAVIEEVRPNLKRDGGDCELVEIDGNKIMVKLAGACIFCKLASATLEGIQARMIEKLG
EFVRLVPVAGAAKARH
>Mature_96_residues
MLVETQGVVEAPAQMSERERIIRAVIEEVRPNLKRDGGDCELVEIDGNKIMVKLAGACIFCKLASATLEGIQARMIEKLG
EFVRLVPVAGAAKARH

Specific function: Involved in the formation or repair of [Fe-S] clusters present in iron-sulfur proteins [H]

COG id: COG0694

COG function: function code O; Thioredoxin-like proteins and domains

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nifU family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007419
- InterPro:   IPR016217
- InterPro:   IPR010238
- InterPro:   IPR001075
- InterPro:   IPR002871
- ProDom:   PD002830 [H]

Pfam domain/function: PF04324 Fer2_BFD; PF01106 NifU; PF01592 NifU_N [H]

EC number: NA

Molecular weight: Translated: 10460; Mature: 10460

Theoretical pI: Translated: 7.19; Mature: 7.19

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.1 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
7.3 %Cys+Met (Translated Protein)
3.1 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
7.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLVETQGVVEAPAQMSERERIIRAVIEEVRPNLKRDGGDCELVEIDGNKIMVKLAGACIF
CCCCCCCCHHCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCEEEEEEHHHHHH
CKLASATLEGIQARMIEKLGEFVRLVPVAGAAKARH
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure
MLVETQGVVEAPAQMSERERIIRAVIEEVRPNLKRDGGDCELVEIDGNKIMVKLAGACIF
CCCCCCCCHHCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCEEEEEEHHHHHH
CKLASATLEGIQARMIEKLGEFVRLVPVAGAAKARH
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2644218; 3040672; 7947754; 10819462 [H]