| Definition | Bradyrhizobium sp. ORS278 chromosome, complete genome. |
|---|---|
| Accession | NC_009445 |
| Length | 7,456,587 |
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The map label for this gene is fct [H]
Identifier: 146341636
GI number: 146341636
Start: 4930199
End: 4932577
Strand: Direct
Name: fct [H]
Synonym: BRADO4739
Alternate gene names: 146341636
Gene position: 4930199-4932577 (Clockwise)
Preceding gene: 146341634
Following gene: 146341637
Centisome position: 66.12
GC content: 64.86
Gene sequence:
>2379_bases ATGAGCGCGGGGGATTTCTGGGGTTCAGTGTCGTTGGCGGGTGTGGTGGTGGCGGGTTTCGCAACGATGACCCCTGCCAA AGCGCAGGACAGGCGGGCCGCAAGCGACACCTTGCTTCCCGACGTGACGGTCGAAGCGCCGCGCCGATCGCCGGCAGCCC GCCGAACGCCATCGTCGGCACAGACTGTCCCTCCAACGGCGCGGACAGCGCCGCGGCGCGCGACGACGGCATCGCAGGCG GCTGGTCCGTCCGCTCCCTCCTCCGTCTCGGCCGGAACGCCGCTCAACAGCAACACCGTCCCGGCGGCCGGCAGCCGGCT CGGCCTCACGGCGCGCGAGGTGCCCGCGGCGGTCGAGGTGGTCGGTAGCGAGACGCTGCGCGAGCAGGGCTACCACACGA CGGTCGATGCGGTGAAAGGCGCGAGCGGCGTGAGCGCCGGCGATGCGCCGAACGACGTCGGCTATGCGATGCGTGGATTC CAGGGCAACCAGGTCAACGTGCTCTACAACGGCATCAACATCGGACCGACCGGTTTCACCGCGCTGACGATGGAGACCTT CAATCTCGACCGCGTCGAGTTTCTCAAGGGCCCCTCCTCCCTGAGTTCGGGCCAGGGCGCCGTGGGCGGCACCATCAATT TCGTCACCAAGACCCCGCACACCGGGCCGGTGCAGAACGAGGCCTTCGTCGGCTTCGACCAGCGCGGCAGCTTTCGCAGC GGCTTCGGCTCCGGCGGCAGCACGAGCGTGCAAGAGCTCGACTATCGCTTCGACATCAGCCGGACCAAGGAAGTCGGCTT CATCGCCGACACCGAGTTCAAGAATGTCCACGTGTCCGGCCAGTTGAACTACCGCCTGTCCGACAGCTTCCGGACCTTCG TGGCCGCCGAGTTCAAGGACTACAAGGCCAAGCCCTATGAAGGCACGCCGCTGGTGCCGGCAGCCGACAGCGGCACCAAT GCGACCGCCGGCATCGTCTCGGGCAGCAAGATATCCGCCTACAACGGCAGCACTCTCGACGCCGTCACGATCGACCGCCG TACGCTGTCGACCAATTACAATGTGGTCGACGGTCACAAGACGATCAAGGAGTCGTGGGTCCGCAGCGGCTTCGAATGGG ACCTGAACAATGCGGTTACCCTGCGGAGCCAAATCTACAACTACAATGCCAGCCGCGACTGGTACAACAACGAGGTCTCG GCGTTCAATGCGGACACCAATGTGGTCGACCGCGAGCGCTTCTTCGTCCACCACAACCATGACATCCTCGGCAACCTCAC CGACGTGACGTGGAACGGAAGCATCTTCGGCCTCGCCAACCGCCTCATTGGCTTGGTCGAGAGCTCACATACCGACTTCA CGCGGCCCGGCGCGGCGAATTTCTTTCACGACACGGTGCCGCTCGTCGGGTTCGACCGAGGCGTGTTCGGCAGTCTCACA ACGCAAATGCAGACAGCCACCATCGACAGCGTCGCATTCAACCTCGAGGACCGGCTGAAGCTGACCGACACCTTCGCCCT CGTCGGCGGCCTCCGCTACAATCCATTCACGCTCGATCGCAATTCAACCGACATGAACGGCGTGGTGAAAAACGGATTCC CCTATTCGAAGAGCTGGCAGCCGGTCACCGGCCGCATCGGATATACCTGGGAAGCGCTGCCGGGCACGACCTTCTACAGC CAATATGCAACGGCGACCGATATCTCGGCGGACAGCATCTTTCTGCTGAGCCCAACGCAGAACCTCACGCTCTCGGACTC CCGCAGCTACGAAACCGGCGTCAAGCAGCTCACCTGGAACGGCCGCGCCGAATGGACCTTCTCGGCGTTCGACATCGCGC GCCACAACGTCTACAGCGCCCAGGCCGGCCAGCAACTCAATTTCGCCGGCAAGGTGAGGTCGCAGGGCGTCGAGCTCGCC GCCGCCGTGCGGCCGACGCCGGAGAGCAAGCTATGGGGTAACGTCGCCTATGTCCGCGCGCGCTACGCCGACTATGATCT CGCCGGCGGCGGCTCCTTCTCCGGCCACACGCCGCCGAACATCCCCGCCGTGATCGTCAATGGCGGCGGCTCCTACCGCT TCCTCAATCCCGCCTGGTGGCCGGTCGAGCTCGGCTTCTCAGTGCGCCATGTCGGCGACCGCTGGAGCACCGATGCCAAC ACCGTGAAGCTGCTCGCCTACACCACCGCGGACCTGTTCGCCTTCATCGACCTGCCGAAGGTGCCGCTGTTCGCCACCGC AACCAGCACCCGTCTCGCCTTTCGCGTCCGCAACGTCACCGACAGGCGCTACGCTGCCTGGAGCGATCCGTTCTATCCCG ACCAGATCTTCCTCGGCGCGCCCCGCACCTACGAGGTCGAAGCCTCGTTCAAATTCTGA
Upstream 100 bases:
>100_bases ACGTTACATAATTTGGCAGATCGGCTAACTGTCGTCCTGGTCATCGGGAACATGAGGGGACGCGGAGGCCGGCTGGCCGG TCACCGTGGTGGGAGTCGAA
Downstream 100 bases:
>100_bases GGCGGCATGATCCGGGCGCTGATCCCCACGCATCGCTGGCTCAGCATTCCCCTGGCTCCGCTGTTCGTGCTGTGGTTCGC CACCGGCATCGTGATGCACT
Product: putative TonB-dependent receptor (Outer membrane siderophore receptor)
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 792; Mature: 791
Protein sequence:
>792_residues MSAGDFWGSVSLAGVVVAGFATMTPAKAQDRRAASDTLLPDVTVEAPRRSPAARRTPSSAQTVPPTARTAPRRATTASQA AGPSAPSSVSAGTPLNSNTVPAAGSRLGLTAREVPAAVEVVGSETLREQGYHTTVDAVKGASGVSAGDAPNDVGYAMRGF QGNQVNVLYNGINIGPTGFTALTMETFNLDRVEFLKGPSSLSSGQGAVGGTINFVTKTPHTGPVQNEAFVGFDQRGSFRS GFGSGGSTSVQELDYRFDISRTKEVGFIADTEFKNVHVSGQLNYRLSDSFRTFVAAEFKDYKAKPYEGTPLVPAADSGTN ATAGIVSGSKISAYNGSTLDAVTIDRRTLSTNYNVVDGHKTIKESWVRSGFEWDLNNAVTLRSQIYNYNASRDWYNNEVS AFNADTNVVDRERFFVHHNHDILGNLTDVTWNGSIFGLANRLIGLVESSHTDFTRPGAANFFHDTVPLVGFDRGVFGSLT TQMQTATIDSVAFNLEDRLKLTDTFALVGGLRYNPFTLDRNSTDMNGVVKNGFPYSKSWQPVTGRIGYTWEALPGTTFYS QYATATDISADSIFLLSPTQNLTLSDSRSYETGVKQLTWNGRAEWTFSAFDIARHNVYSAQAGQQLNFAGKVRSQGVELA AAVRPTPESKLWGNVAYVRARYADYDLAGGGSFSGHTPPNIPAVIVNGGGSYRFLNPAWWPVELGFSVRHVGDRWSTDAN TVKLLAYTTADLFAFIDLPKVPLFATATSTRLAFRVRNVTDRRYAAWSDPFYPDQIFLGAPRTYEVEASFKF
Sequences:
>Translated_792_residues MSAGDFWGSVSLAGVVVAGFATMTPAKAQDRRAASDTLLPDVTVEAPRRSPAARRTPSSAQTVPPTARTAPRRATTASQA AGPSAPSSVSAGTPLNSNTVPAAGSRLGLTAREVPAAVEVVGSETLREQGYHTTVDAVKGASGVSAGDAPNDVGYAMRGF QGNQVNVLYNGINIGPTGFTALTMETFNLDRVEFLKGPSSLSSGQGAVGGTINFVTKTPHTGPVQNEAFVGFDQRGSFRS GFGSGGSTSVQELDYRFDISRTKEVGFIADTEFKNVHVSGQLNYRLSDSFRTFVAAEFKDYKAKPYEGTPLVPAADSGTN ATAGIVSGSKISAYNGSTLDAVTIDRRTLSTNYNVVDGHKTIKESWVRSGFEWDLNNAVTLRSQIYNYNASRDWYNNEVS AFNADTNVVDRERFFVHHNHDILGNLTDVTWNGSIFGLANRLIGLVESSHTDFTRPGAANFFHDTVPLVGFDRGVFGSLT TQMQTATIDSVAFNLEDRLKLTDTFALVGGLRYNPFTLDRNSTDMNGVVKNGFPYSKSWQPVTGRIGYTWEALPGTTFYS QYATATDISADSIFLLSPTQNLTLSDSRSYETGVKQLTWNGRAEWTFSAFDIARHNVYSAQAGQQLNFAGKVRSQGVELA AAVRPTPESKLWGNVAYVRARYADYDLAGGGSFSGHTPPNIPAVIVNGGGSYRFLNPAWWPVELGFSVRHVGDRWSTDAN TVKLLAYTTADLFAFIDLPKVPLFATATSTRLAFRVRNVTDRRYAAWSDPFYPDQIFLGAPRTYEVEASFKF >Mature_791_residues SAGDFWGSVSLAGVVVAGFATMTPAKAQDRRAASDTLLPDVTVEAPRRSPAARRTPSSAQTVPPTARTAPRRATTASQAA GPSAPSSVSAGTPLNSNTVPAAGSRLGLTAREVPAAVEVVGSETLREQGYHTTVDAVKGASGVSAGDAPNDVGYAMRGFQ GNQVNVLYNGINIGPTGFTALTMETFNLDRVEFLKGPSSLSSGQGAVGGTINFVTKTPHTGPVQNEAFVGFDQRGSFRSG FGSGGSTSVQELDYRFDISRTKEVGFIADTEFKNVHVSGQLNYRLSDSFRTFVAAEFKDYKAKPYEGTPLVPAADSGTNA TAGIVSGSKISAYNGSTLDAVTIDRRTLSTNYNVVDGHKTIKESWVRSGFEWDLNNAVTLRSQIYNYNASRDWYNNEVSA FNADTNVVDRERFFVHHNHDILGNLTDVTWNGSIFGLANRLIGLVESSHTDFTRPGAANFFHDTVPLVGFDRGVFGSLTT QMQTATIDSVAFNLEDRLKLTDTFALVGGLRYNPFTLDRNSTDMNGVVKNGFPYSKSWQPVTGRIGYTWEALPGTTFYSQ YATATDISADSIFLLSPTQNLTLSDSRSYETGVKQLTWNGRAEWTFSAFDIARHNVYSAQAGQQLNFAGKVRSQGVELAA AVRPTPESKLWGNVAYVRARYADYDLAGGGSFSGHTPPNIPAVIVNGGGSYRFLNPAWWPVELGFSVRHVGDRWSTDANT VKLLAYTTADLFAFIDLPKVPLFATATSTRLAFRVRNVTDRRYAAWSDPFYPDQIFLGAPRTYEVEASFKF
Specific function: Involved in the initial step of iron uptake by binding chrysobactin, an iron chelatin siderophore that allows the bacteria to extract iron from the environment [H]
COG id: COG1629
COG function: function code P; Outer membrane receptor proteins, mostly Fe transport
Gene ontology:
Cell location: Cell outer membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the tonB-dependent receptor family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012910 - InterPro: IPR000531 - InterPro: IPR010916 - InterPro: IPR010105 [H]
Pfam domain/function: PF07715 Plug; PF00593 TonB_dep_Rec [H]
EC number: NA
Molecular weight: Translated: 85668; Mature: 85536
Theoretical pI: Translated: 7.49; Mature: 7.49
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 0.8 %Met (Translated Protein) 0.8 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 0.6 %Met (Mature Protein) 0.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSAGDFWGSVSLAGVVVAGFATMTPAKAQDRRAASDTLLPDVTVEAPRRSPAARRTPSSA CCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCCCEEECCCCCCCCCCCCCCC QTVPPTARTAPRRATTASQAAGPSAPSSVSAGTPLNSNTVPAAGSRLGLTAREVPAAVEV CCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCHHEEH VGSETLREQGYHTTVDAVKGASGVSAGDAPNDVGYAMRGFQGNQVNVLYNGINIGPTGFT HCCHHHHHCCCEEEHHHHCCCCCCCCCCCCCCCCHHHCCCCCCEEEEEEECEEECCCCEE ALTMETFNLDRVEFLKGPSSLSSGQGAVGGTINFVTKTPHTGPVQNEAFVGFDQRGSFRS EEEEEECCCCHHHHHCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCEEEEECCCCCCCC GFGSGGSTSVQELDYRFDISRTKEVGFIADTEFKNVHVSGQLNYRLSDSFRTFVAAEFKD CCCCCCCCCHHHEEEEECCCCCCCCCEEECCCCCEEEEEEEEEEEECCCHHEEEEEHHHH YKAKPYEGTPLVPAADSGTNATAGIVSGSKISAYNGSTLDAVTIDRRTLSTNYNVVDGHK CCCCCCCCCCCCCCCCCCCCCEEEEECCCEEEECCCCEEEEEEECCEEECCCCEEECCHH TIKESWVRSGFEWDLNNAVTLRSQIYNYNASRDWYNNEVSAFNADTNVVDRERFFVHHNH HHHHHHHHCCCEECCCCEEEEEEHHCCCCCCCCCCCCCCEEEECCCCEEECEEEEEEECC DILGNLTDVTWNGSIFGLANRLIGLVESSHTDFTRPGAANFFHDTVPLVGFDRGVFGSLT CEECCEEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHCCCCEEEECCCCCCHHH TQMQTATIDSVAFNLEDRLKLTDTFALVGGLRYNPFTLDRNSTDMNGVVKNGFPYSKSWQ HHEEHEEHHHEEECCCCCEEEEEEEHHHCCCCCCCEEECCCCCCCCCEEECCCCCCCCCC PVTGRIGYTWEALPGTTFYSQYATATDISADSIFLLSPTQNLTLSDSRSYETGVKQLTWN CCCCCCCEEEECCCCCCHHHHCCCCCCCCCCEEEEECCCCCEEECCCCCHHCCCCEEEEC GRAEWTFSAFDIARHNVYSAQAGQQLNFAGKVRSQGVELAAAVRPTPESKLWGNVAYVRA CCCEEEEEHHHHHHCCEECCCCCCCCCCHHHHHCCCEEEEEEECCCCCHHHCCCEEEEEE RYADYDLAGGGSFSGHTPPNIPAVIVNGGGSYRFLNPAWWPVELGFSVRHVGDRWSTDAN EECCCEECCCCCCCCCCCCCCCEEEEECCCCEEECCCCCCEEEECCEEEECCCCCCCCCC TVKLLAYTTADLFAFIDLPKVPLFATATSTRLAFRVRNVTDRRYAAWSDPFYPDQIFLGA EEEEEEEECCCEEEEECCCCCCEEEEECCCEEEEEEECCCCCCEECCCCCCCCCEEEECC PRTYEVEASFKF CCEEEEEEEECC >Mature Secondary Structure SAGDFWGSVSLAGVVVAGFATMTPAKAQDRRAASDTLLPDVTVEAPRRSPAARRTPSSA CCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCCCEEECCCCCCCCCCCCCCC QTVPPTARTAPRRATTASQAAGPSAPSSVSAGTPLNSNTVPAAGSRLGLTAREVPAAVEV CCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCHHEEH VGSETLREQGYHTTVDAVKGASGVSAGDAPNDVGYAMRGFQGNQVNVLYNGINIGPTGFT HCCHHHHHCCCEEEHHHHCCCCCCCCCCCCCCCCHHHCCCCCCEEEEEEECEEECCCCEE ALTMETFNLDRVEFLKGPSSLSSGQGAVGGTINFVTKTPHTGPVQNEAFVGFDQRGSFRS EEEEEECCCCHHHHHCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCEEEEECCCCCCCC GFGSGGSTSVQELDYRFDISRTKEVGFIADTEFKNVHVSGQLNYRLSDSFRTFVAAEFKD CCCCCCCCCHHHEEEEECCCCCCCCCEEECCCCCEEEEEEEEEEEECCCHHEEEEEHHHH YKAKPYEGTPLVPAADSGTNATAGIVSGSKISAYNGSTLDAVTIDRRTLSTNYNVVDGHK CCCCCCCCCCCCCCCCCCCCCEEEEECCCEEEECCCCEEEEEEECCEEECCCCEEECCHH TIKESWVRSGFEWDLNNAVTLRSQIYNYNASRDWYNNEVSAFNADTNVVDRERFFVHHNH HHHHHHHHCCCEECCCCEEEEEEHHCCCCCCCCCCCCCCEEEECCCCEEECEEEEEEECC DILGNLTDVTWNGSIFGLANRLIGLVESSHTDFTRPGAANFFHDTVPLVGFDRGVFGSLT CEECCEEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHCCCCEEEECCCCCCHHH TQMQTATIDSVAFNLEDRLKLTDTFALVGGLRYNPFTLDRNSTDMNGVVKNGFPYSKSWQ HHEEHEEHHHEEECCCCCEEEEEEEHHHCCCCCCCEEECCCCCCCCCEEECCCCCCCCCC PVTGRIGYTWEALPGTTFYSQYATATDISADSIFLLSPTQNLTLSDSRSYETGVKQLTWN CCCCCCCEEEECCCCCCHHHHCCCCCCCCCCEEEEECCCCCEEECCCCCHHCCCCEEEEC GRAEWTFSAFDIARHNVYSAQAGQQLNFAGKVRSQGVELAAAVRPTPESKLWGNVAYVRA CCCEEEEEHHHHHHCCEECCCCCCCCCCHHHHHCCCEEEEEEECCCCCHHHCCCEEEEEE RYADYDLAGGGSFSGHTPPNIPAVIVNGGGSYRFLNPAWWPVELGFSVRHVGDRWSTDAN EECCCEECCCCCCCCCCCCCCCEEEEECCCCEEECCCCCCEEEECCEEEECCCCCCCCCC TVKLLAYTTADLFAFIDLPKVPLFATATSTRLAFRVRNVTDRRYAAWSDPFYPDQIFLGA EEEEEEEECCCEEEEECCCCCCEEEEECCCEEEEEEECCCCCCEECCCCCCCCCEEEECC PRTYEVEASFKF CCEEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 8576065 [H]