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The map label for this gene is ddpC [H]

Identifier: 146341322

GI number: 146341322

Start: 4605128

End: 4605979

Strand: Reverse

Name: ddpC [H]

Synonym: BRADO4404

Alternate gene names: 146341322

Gene position: 4605979-4605128 (Counterclockwise)

Preceding gene: 146341323

Following gene: 146341321

Centisome position: 61.77

GC content: 66.31

Gene sequence:

>852_bases
ATGAGCCTGGTCACGCTCGCCCGCAACACCGGCTACGCGTTCGGCGAAAACCGCCTGACGCTGGTGGCCGCGATCATCCT
GGCGCTGCTGACGCTGTTCGCGATCTTCGGCCCCTCGATCGCGCCCTATGATCCTCTGCTCACCTCGGCGACAACCAAGC
TCGCGCGCCCGAGCCTCGCGCATCCGTTCGGCACCGACGCGCTCGGCCGCGACATCCTGAGCCGCGTCATTGTCGCCACG
CGCCTTGATCTCGGCATGGCGGTGTCGGCAGTGGCGCTGTCCTTCGTGGTCGGCCTCGCGCTGGGCGCGCTCGCCGGCTA
TTTCGGCGGCTGGACCGACCGCATCATCGGCCGCGCGATGGACACCATCATGGCGTTCCCGTTGTTCGTGCTGGCGATGG
GCATCGTGGTGGCGCTGGGCAACAGCGTCGCCAACATCATCATCGCGACGATGATCATCAATCTGCCGTTCTACTGCCGC
TTCGCGCGTGCGGAGGTGAACGTGCGGCGCGAGCTCGGCTATGTCGAGGCGGCGCGGATGGGCGGCAACGGACCGCTGCG
CGTCCTGATCAATCATATCGTCCCGAACATCCTGCCGCCGATGATGGTGCAGGCCTCGCTCAACATGGGCTGGGCGATCC
TCAACGCCGCCGGCCTGTCTTTCATAGGACTCGGCGTGCGGCCGCCGACGCCCGAATGGGGCATCATGGTCTCGGAAGGC
GCGAGCTACATCATTTCCGGCGAATGGTGGGCCTTCATGTTCCCGGGCGCGGCGCTCGTGCTCGCGGTGTTCTCCTTCAA
CATGCTGGGCGATGGACTGCGCGACCTGCTCGATCCAAGGAAGCGCGTGTGA

Upstream 100 bases:

>100_bases
CTTCGTGCTGATGATGGCCGTGCTCTACGTGCTGCTCAATCTCGCGGTGGACGTGTTCGCCACGCTCGTCGATCCCCGTG
TCCGGTTCGAGGGCTGAGCC

Downstream 100 bases:

>100_bases
TGGCGCAGCTCGAGATCGACAACCTCTCGGTGGAATTCCGCACCCGTCATGGCGTGGTGCGGGCGCTGGATGCCGTCAGC
CTGTCGGTCTCGCGCGGTGA

Product: putative dipeptide ABC transporter permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 283; Mature: 282

Protein sequence:

>283_residues
MSLVTLARNTGYAFGENRLTLVAAIILALLTLFAIFGPSIAPYDPLLTSATTKLARPSLAHPFGTDALGRDILSRVIVAT
RLDLGMAVSAVALSFVVGLALGALAGYFGGWTDRIIGRAMDTIMAFPLFVLAMGIVVALGNSVANIIIATMIINLPFYCR
FARAEVNVRRELGYVEAARMGGNGPLRVLINHIVPNILPPMMVQASLNMGWAILNAAGLSFIGLGVRPPTPEWGIMVSEG
ASYIISGEWWAFMFPGAALVLAVFSFNMLGDGLRDLLDPRKRV

Sequences:

>Translated_283_residues
MSLVTLARNTGYAFGENRLTLVAAIILALLTLFAIFGPSIAPYDPLLTSATTKLARPSLAHPFGTDALGRDILSRVIVAT
RLDLGMAVSAVALSFVVGLALGALAGYFGGWTDRIIGRAMDTIMAFPLFVLAMGIVVALGNSVANIIIATMIINLPFYCR
FARAEVNVRRELGYVEAARMGGNGPLRVLINHIVPNILPPMMVQASLNMGWAILNAAGLSFIGLGVRPPTPEWGIMVSEG
ASYIISGEWWAFMFPGAALVLAVFSFNMLGDGLRDLLDPRKRV
>Mature_282_residues
SLVTLARNTGYAFGENRLTLVAAIILALLTLFAIFGPSIAPYDPLLTSATTKLARPSLAHPFGTDALGRDILSRVIVATR
LDLGMAVSAVALSFVVGLALGALAGYFGGWTDRIIGRAMDTIMAFPLFVLAMGIVVALGNSVANIIIATMIINLPFYCRF
ARAEVNVRRELGYVEAARMGGNGPLRVLINHIVPNILPPMMVQASLNMGWAILNAAGLSFIGLGVRPPTPEWGIMVSEGA
SYIISGEWWAFMFPGAALVLAVFSFNMLGDGLRDLLDPRKRV

Specific function: Part of the ABC transporter complex ddpABCDF, which is probably involved in D,D-dipeptide transport. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1173

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787760, Length=262, Percent_Identity=45.0381679389313, Blast_Score=224, Evalue=6e-60,
Organism=Escherichia coli, GI1787054, Length=270, Percent_Identity=41.8518518518518, Blast_Score=205, Evalue=3e-54,
Organism=Escherichia coli, GI1789964, Length=277, Percent_Identity=42.2382671480144, Blast_Score=185, Evalue=3e-48,
Organism=Escherichia coli, GI1789889, Length=239, Percent_Identity=39.7489539748954, Blast_Score=175, Evalue=3e-45,
Organism=Escherichia coli, GI1787498, Length=280, Percent_Identity=33.9285714285714, Blast_Score=137, Evalue=6e-34,
Organism=Escherichia coli, GI1787549, Length=251, Percent_Identity=33.0677290836653, Blast_Score=120, Evalue=9e-29,
Organism=Escherichia coli, GI1788505, Length=227, Percent_Identity=25.1101321585903, Blast_Score=72, Evalue=5e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 30221; Mature: 30090

Theoretical pI: Translated: 9.77; Mature: 9.77

Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
4.6 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLVTLARNTGYAFGENRLTLVAAIILALLTLFAIFGPSIAPYDPLLTSATTKLARPSLA
CCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCC
HPFGTDALGRDILSRVIVATRLDLGMAVSAVALSFVVGLALGALAGYFGGWTDRIIGRAM
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
DTIMAFPLFVLAMGIVVALGNSVANIIIATMIINLPFYCRFARAEVNVRRELGYVEAARM
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHEEHHHHHHHHHHHHHHHHHHHC
GGNGPLRVLINHIVPNILPPMMVQASLNMGWAILNAAGLSFIGLGVRPPTPEWGIMVSEG
CCCCHHHHHHHHHHHHHCCHHHHHHHCCCCHHHHHHCCHHHEECCCCCCCCCCCEEEECC
ASYIISGEWWAFMFPGAALVLAVFSFNMLGDGLRDLLDPRKRV
CCEEEECCEEEEECCHHHHHHHHHHHHHHHHHHHHHHCHHCCC
>Mature Secondary Structure 
SLVTLARNTGYAFGENRLTLVAAIILALLTLFAIFGPSIAPYDPLLTSATTKLARPSLA
CEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCC
HPFGTDALGRDILSRVIVATRLDLGMAVSAVALSFVVGLALGALAGYFGGWTDRIIGRAM
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
DTIMAFPLFVLAMGIVVALGNSVANIIIATMIINLPFYCRFARAEVNVRRELGYVEAARM
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHEEHHHHHHHHHHHHHHHHHHHC
GGNGPLRVLINHIVPNILPPMMVQASLNMGWAILNAAGLSFIGLGVRPPTPEWGIMVSEG
CCCCHHHHHHHHHHHHHCCHHHHHHHCCCCHHHHHHCCHHHEECCCCCCCCCCCEEEECC
ASYIISGEWWAFMFPGAALVLAVFSFNMLGDGLRDLLDPRKRV
CCEEEECCEEEEECCHHHHHHHHHHHHHHHHHHHHHHCHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503; 9751644 [H]