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The map label for this gene is ddpB [H]

Identifier: 146341323

GI number: 146341323

Start: 4605983

End: 4606996

Strand: Reverse

Name: ddpB [H]

Synonym: BRADO4405

Alternate gene names: 146341323

Gene position: 4606996-4605983 (Counterclockwise)

Preceding gene: 146341324

Following gene: 146341322

Centisome position: 61.78

GC content: 67.65

Gene sequence:

>1014_bases
ATGGCTTTCGTGTGGAAGCGACTGCTTGGCACCATCCCGAGCCTGGTGGGTGTCGTCGTTCTCACCTTCTTCATTTCGCG
CGCGTTGCCCGGAGATCCCGCCGCGTTCTTCGCCGGGCCCGCGGCCAATGCCGCGTCGATCGCCAGCATCCGCGCCACGC
TGGGCCTCGATCGTCCGCTGCCGGTGCAGTTCGTGAGCTACATCGCCGACCTCGCGCACGGCAATCTCGGCCGCTCGCTC
ACGACCGGGCAGCCGGTGCTGACCGATCTGCTCGAACGCTTGCCTGCATCGCTCGAGCTGTCATCCTTCGCGCTGCTGTT
CGCGATCGGCATCGCCATTCCGATGGGCGTGTGGGCGGCGACCCGCCTCAATGGCGGCGTCGATCACGCCTGTCGTGCGC
TGGTCACCGTCAGCGCCGCGTTTCCGACCTTCTTCGTCGGTCTGCTGTTGGTCTACATCTTCTACTTCCTGCTCGGCTGG
GCGCCGCAGCCGCTCGGCCGGCTCGACGAGATCGCCTTCTCGCCGCCGCCCCGCGTCACCGGGGCCTACACCATCGACGC
CGTCATCGCCGGCGACTGGCCGGTGTTGCGCGCGGCCTTGGCGCAGCTGATCTTGCCCGCGATCTCGCTCGGGCTGTTCG
CGCTGGCGCCGATCGCGCGGATCACGCGCGCCGCGATGCTCGAGGCTCTGAGCAGCGATTTCATCCGTACCGCGCGCGCC
AGCGGCCTGCCGGTGCGCAAAATCCTGATGGCCTACGCCTTCCGCAACGTGCTGCTGCCGGTCTCGAGCGTGCTCGGCAT
GGTGTTCTCCTTCCTGATCGGCTCCAACGTTCTGATCGAGCAGGTGTTCGGCTGGCAGGGCGTCGGCGCCTATGCGGTGG
CGGCCGTCATCGCCTCCGACTACGCTGCGGTGCAGGGCTTCGTGCTGATGATGGCCGTGCTCTACGTGCTGCTCAATCTC
GCGGTGGACGTGTTCGCCACGCTCGTCGATCCCCGTGTCCGGTTCGAGGGCTGA

Upstream 100 bases:

>100_bases
GCTAGCCGCCCCTTGGCTGCATCCGACTGTCGATGGGGCCTCACCCGTTGAGGCGCGGCGCAAGCCGTCGCTGCAGCGAA
GGTTGGCAGGCGAACCGCTG

Downstream 100 bases:

>100_bases
GCCATGAGCCTGGTCACGCTCGCCCGCAACACCGGCTACGCGTTCGGCGAAAACCGCCTGACGCTGGTGGCCGCGATCAT
CCTGGCGCTGCTGACGCTGT

Product: putative dipeptide ABC transporter permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 337; Mature: 336

Protein sequence:

>337_residues
MAFVWKRLLGTIPSLVGVVVLTFFISRALPGDPAAFFAGPAANAASIASIRATLGLDRPLPVQFVSYIADLAHGNLGRSL
TTGQPVLTDLLERLPASLELSSFALLFAIGIAIPMGVWAATRLNGGVDHACRALVTVSAAFPTFFVGLLLVYIFYFLLGW
APQPLGRLDEIAFSPPPRVTGAYTIDAVIAGDWPVLRAALAQLILPAISLGLFALAPIARITRAAMLEALSSDFIRTARA
SGLPVRKILMAYAFRNVLLPVSSVLGMVFSFLIGSNVLIEQVFGWQGVGAYAVAAVIASDYAAVQGFVLMMAVLYVLLNL
AVDVFATLVDPRVRFEG

Sequences:

>Translated_337_residues
MAFVWKRLLGTIPSLVGVVVLTFFISRALPGDPAAFFAGPAANAASIASIRATLGLDRPLPVQFVSYIADLAHGNLGRSL
TTGQPVLTDLLERLPASLELSSFALLFAIGIAIPMGVWAATRLNGGVDHACRALVTVSAAFPTFFVGLLLVYIFYFLLGW
APQPLGRLDEIAFSPPPRVTGAYTIDAVIAGDWPVLRAALAQLILPAISLGLFALAPIARITRAAMLEALSSDFIRTARA
SGLPVRKILMAYAFRNVLLPVSSVLGMVFSFLIGSNVLIEQVFGWQGVGAYAVAAVIASDYAAVQGFVLMMAVLYVLLNL
AVDVFATLVDPRVRFEG
>Mature_336_residues
AFVWKRLLGTIPSLVGVVVLTFFISRALPGDPAAFFAGPAANAASIASIRATLGLDRPLPVQFVSYIADLAHGNLGRSLT
TGQPVLTDLLERLPASLELSSFALLFAIGIAIPMGVWAATRLNGGVDHACRALVTVSAAFPTFFVGLLLVYIFYFLLGWA
PQPLGRLDEIAFSPPPRVTGAYTIDAVIAGDWPVLRAALAQLILPAISLGLFALAPIARITRAAMLEALSSDFIRTARAS
GLPVRKILMAYAFRNVLLPVSSVLGMVFSFLIGSNVLIEQVFGWQGVGAYAVAAVIASDYAAVQGFVLMMAVLYVLLNLA
VDVFATLVDPRVRFEG

Specific function: Part of the ABC transporter complex ddpABCDF, which is probably involved in D,D-dipeptide transport. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0601

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787761, Length=328, Percent_Identity=45.1219512195122, Blast_Score=229, Evalue=2e-61,
Organism=Escherichia coli, GI1789965, Length=341, Percent_Identity=37.2434017595308, Blast_Score=218, Evalue=3e-58,
Organism=Escherichia coli, GI1787053, Length=336, Percent_Identity=33.6309523809524, Blast_Score=198, Evalue=4e-52,
Organism=Escherichia coli, GI1789888, Length=341, Percent_Identity=33.7243401759531, Blast_Score=179, Evalue=3e-46,
Organism=Escherichia coli, GI1787497, Length=337, Percent_Identity=33.2344213649852, Blast_Score=176, Evalue=3e-45,
Organism=Escherichia coli, GI1787550, Length=276, Percent_Identity=29.3478260869565, Blast_Score=124, Evalue=9e-30,
Organism=Escherichia coli, GI1788504, Length=379, Percent_Identity=25.065963060686, Blast_Score=111, Evalue=6e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 35777; Mature: 35646

Theoretical pI: Translated: 9.35; Mature: 9.35

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAFVWKRLLGTIPSLVGVVVLTFFISRALPGDPAAFFAGPAANAASIASIRATLGLDRPL
CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCCCCHHHHHHHHHHHCCCCCC
PVQFVSYIADLAHGNLGRSLTTGQPVLTDLLERLPASLELSSFALLFAIGIAIPMGVWAA
HHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHH
TRLNGGVDHACRALVTVSAAFPTFFVGLLLVYIFYFLLGWAPQPLGRLDEIAFSPPPRVT
HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCCCCCCC
GAYTIDAVIAGDWPVLRAALAQLILPAISLGLFALAPIARITRAAMLEALSSDFIRTARA
CCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
SGLPVRKILMAYAFRNVLLPVSSVLGMVFSFLIGSNVLIEQVFGWQGVGAYAVAAVIASD
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCHHHHHHHHHHHHH
YAAVQGFVLMMAVLYVLLNLAVDVFATLVDPRVRFEG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure 
AFVWKRLLGTIPSLVGVVVLTFFISRALPGDPAAFFAGPAANAASIASIRATLGLDRPL
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCCCCHHHHHHHHHHHCCCCCC
PVQFVSYIADLAHGNLGRSLTTGQPVLTDLLERLPASLELSSFALLFAIGIAIPMGVWAA
HHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHH
TRLNGGVDHACRALVTVSAAFPTFFVGLLLVYIFYFLLGWAPQPLGRLDEIAFSPPPRVT
HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCCCCCCC
GAYTIDAVIAGDWPVLRAALAQLILPAISLGLFALAPIARITRAAMLEALSSDFIRTARA
CCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
SGLPVRKILMAYAFRNVLLPVSSVLGMVFSFLIGSNVLIEQVFGWQGVGAYAVAAVIASD
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCHHHHHHHHHHHHH
YAAVQGFVLMMAVLYVLLNLAVDVFATLVDPRVRFEG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503; 9751644 [H]