| Definition | Bradyrhizobium sp. ORS278 chromosome, complete genome. |
|---|---|
| Accession | NC_009445 |
| Length | 7,456,587 |
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The map label for this gene is ddpD [C]
Identifier: 146341321
GI number: 146341321
Start: 4604166
End: 4605128
Strand: Reverse
Name: ddpD [C]
Synonym: BRADO4403
Alternate gene names: 146341321
Gene position: 4605128-4604166 (Counterclockwise)
Preceding gene: 146341322
Following gene: 146341320
Centisome position: 61.76
GC content: 67.19
Gene sequence:
>963_bases ATGGCGCAGCTCGAGATCGACAACCTCTCGGTGGAATTCCGCACCCGTCATGGCGTGGTGCGGGCGCTGGATGCCGTCAG CCTGTCGGTCTCGCGCGGTGAGATCGTCGGCGTGGTCGGCGAAAGCGGCTCTGGCAAATCCGTCACCGCCTACACCGTGA TGGGCCTCAACGATGCCGCCGCACGCGTCACCAAGGGCGCGATCACGATGGGCGGCATCGATCTTTTGGCGGCGCCCCCG GAAGCGATGCGCGAGCTGCGTGGACGCGAGATGGCGATGATCTTCCAGAGCCCGCGCACCGCGCTCAATCCGATCCGCAA GGTCGGCAAGCAGATCGAGGACGTCCTGCAGGAGCATGCCGCGCTGCCGCGGCGCGAGCTGAAAACGGCGGCGATCGCCG CACTGGCGCGGGTGCGCATTCCCGATCCCGAGCGCCGCGCGGAGGCCTATCCGTTCGAGCTGTCGGGGGGCATGTGCCAG CGCGTGATGATTGCGATGGCGCTGGCCTGCACACCGTCCGTGCTGATCGCGGACGAGCCGACGACGGGACTCGACGTGAC GACCCAGGCCGTGATCATGGACCTGATCCGCGAGATGAGCCGCGCGACGCAGATGTCGACCTTGCTGATCACTCACGATC TCGGCCTCGCTGGCGAGTATTGCGACCGGATCGCTGTCATGCATGCCGGCCACATCGTCGAGATCGCACCGACCGAACAA TTGCTGGAGCGTCCGGCGCATCCCTATACGCGCCGGCTGCTGGCGGCGACGCCCGTGCCGGAGTCGCGCCTCGACGACCT CAATGCCATCCCCGGCCATCTGCCAGATCTCCGCGGCGCGCTGCCGCCGTGTCGCTTCAGCGGACGCTGCGAGCTGAGGC AGCCGATCTGCGATGAAGCGGAGCTGCCTTGGACCCGTGTATCACCCCAGCATCTCGTGCGTTGCCGGTTTCCGCTCTCA TGA
Upstream 100 bases:
>100_bases CCTTCATGTTCCCGGGCGCGGCGCTCGTGCTCGCGGTGTTCTCCTTCAACATGCTGGGCGATGGACTGCGCGACCTGCTC GATCCAAGGAAGCGCGTGTG
Downstream 100 bases:
>100_bases CACCGCTGCTCGAGGTCAGGTCGCTATCCAAGCTGTACCCGATCAAGCGGGCAGGGAAGGGGGCAAAGCTCCATGCCGTC GACGACGTCAGTCTGACGAT
Product: putative dipeptide ABC transporter ATP-binding protein
Products: ADP; phosphate; dipeptides [Cytoplasm] [C]
Alternate protein names: NA
Number of amino acids: Translated: 320; Mature: 319
Protein sequence:
>320_residues MAQLEIDNLSVEFRTRHGVVRALDAVSLSVSRGEIVGVVGESGSGKSVTAYTVMGLNDAAARVTKGAITMGGIDLLAAPP EAMRELRGREMAMIFQSPRTALNPIRKVGKQIEDVLQEHAALPRRELKTAAIAALARVRIPDPERRAEAYPFELSGGMCQ RVMIAMALACTPSVLIADEPTTGLDVTTQAVIMDLIREMSRATQMSTLLITHDLGLAGEYCDRIAVMHAGHIVEIAPTEQ LLERPAHPYTRRLLAATPVPESRLDDLNAIPGHLPDLRGALPPCRFSGRCELRQPICDEAELPWTRVSPQHLVRCRFPLS
Sequences:
>Translated_320_residues MAQLEIDNLSVEFRTRHGVVRALDAVSLSVSRGEIVGVVGESGSGKSVTAYTVMGLNDAAARVTKGAITMGGIDLLAAPP EAMRELRGREMAMIFQSPRTALNPIRKVGKQIEDVLQEHAALPRRELKTAAIAALARVRIPDPERRAEAYPFELSGGMCQ RVMIAMALACTPSVLIADEPTTGLDVTTQAVIMDLIREMSRATQMSTLLITHDLGLAGEYCDRIAVMHAGHIVEIAPTEQ LLERPAHPYTRRLLAATPVPESRLDDLNAIPGHLPDLRGALPPCRFSGRCELRQPICDEAELPWTRVSPQHLVRCRFPLS >Mature_319_residues AQLEIDNLSVEFRTRHGVVRALDAVSLSVSRGEIVGVVGESGSGKSVTAYTVMGLNDAAARVTKGAITMGGIDLLAAPPE AMRELRGREMAMIFQSPRTALNPIRKVGKQIEDVLQEHAALPRRELKTAAIAALARVRIPDPERRAEAYPFELSGGMCQR VMIAMALACTPSVLIADEPTTGLDVTTQAVIMDLIREMSRATQMSTLLITHDLGLAGEYCDRIAVMHAGHIVEIAPTEQL LERPAHPYTRRLLAATPVPESRLDDLNAIPGHLPDLRGALPPCRFSGRCELRQPICDEAELPWTRVSPQHLVRCRFPLS
Specific function: Probably part of an ABC transporter complex that could be involved in peptide import. Probably responsible for energy coupling to the transport system [H]
COG id: COG0444
COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component
Gene ontology:
Cell location: Cell inner membrane; Peripheral membrane protein (Potential) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ABC transporter domain [H]
Homologues:
Organism=Homo sapiens, GI27477115, Length=225, Percent_Identity=27.1111111111111, Blast_Score=77, Evalue=3e-14, Organism=Homo sapiens, GI153792144, Length=247, Percent_Identity=23.8866396761134, Blast_Score=73, Evalue=3e-13, Organism=Homo sapiens, GI156105685, Length=244, Percent_Identity=29.9180327868852, Blast_Score=68, Evalue=1e-11, Organism=Homo sapiens, GI9665248, Length=245, Percent_Identity=28.1632653061224, Blast_Score=67, Evalue=2e-11, Organism=Homo sapiens, GI150417984, Length=298, Percent_Identity=26.8456375838926, Blast_Score=66, Evalue=4e-11, Organism=Homo sapiens, GI171184400, Length=256, Percent_Identity=28.90625, Blast_Score=65, Evalue=8e-11, Organism=Escherichia coli, GI1789963, Length=320, Percent_Identity=42.8125, Blast_Score=247, Evalue=8e-67, Organism=Escherichia coli, GI1787759, Length=288, Percent_Identity=45.4861111111111, Blast_Score=244, Evalue=4e-66, Organism=Escherichia coli, GI48994883, Length=318, Percent_Identity=40.8805031446541, Blast_Score=239, Evalue=2e-64, Organism=Escherichia coli, GI1787548, Length=328, Percent_Identity=39.0243902439024, Blast_Score=219, Evalue=3e-58, Organism=Escherichia coli, GI145693107, Length=261, Percent_Identity=45.2107279693487, Blast_Score=216, Evalue=1e-57, Organism=Escherichia coli, GI1788506, Length=287, Percent_Identity=41.1149825783972, Blast_Score=197, Evalue=1e-51, Organism=Escherichia coli, GI1787500, Length=326, Percent_Identity=35.2760736196319, Blast_Score=189, Evalue=3e-49, Organism=Escherichia coli, GI1789962, Length=299, Percent_Identity=34.7826086956522, Blast_Score=171, Evalue=6e-44, Organism=Escherichia coli, GI1789890, Length=256, Percent_Identity=37.890625, Blast_Score=153, Evalue=1e-38, Organism=Escherichia coli, GI1787758, Length=280, Percent_Identity=33.5714285714286, Blast_Score=142, Evalue=2e-35, Organism=Escherichia coli, GI48994997, Length=238, Percent_Identity=34.453781512605, Blast_Score=129, Evalue=3e-31, Organism=Escherichia coli, GI1786398, Length=276, Percent_Identity=30.7971014492754, Blast_Score=122, Evalue=2e-29, Organism=Escherichia coli, GI1789032, Length=246, Percent_Identity=32.520325203252, Blast_Score=119, Evalue=2e-28, Organism=Escherichia coli, GI1787547, Length=259, Percent_Identity=30.1158301158301, Blast_Score=116, Evalue=2e-27, Organism=Escherichia coli, GI1789891, Length=222, Percent_Identity=34.6846846846847, Blast_Score=116, Evalue=2e-27, Organism=Escherichia coli, GI87081709, Length=270, Percent_Identity=32.2222222222222, Blast_Score=115, Evalue=5e-27, Organism=Escherichia coli, GI1788225, Length=258, Percent_Identity=32.1705426356589, Blast_Score=110, Evalue=2e-25, Organism=Escherichia coli, GI87081791, Length=263, Percent_Identity=31.1787072243346, Blast_Score=107, Evalue=7e-25, Organism=Escherichia coli, GI1789672, Length=241, Percent_Identity=30.7053941908714, Blast_Score=100, Evalue=2e-22, Organism=Escherichia coli, GI1788761, Length=247, Percent_Identity=31.5789473684211, Blast_Score=99, Evalue=5e-22, Organism=Escherichia coli, GI1786703, Length=216, Percent_Identity=34.7222222222222, Blast_Score=98, Evalue=6e-22, Organism=Escherichia coli, GI1787029, Length=247, Percent_Identity=29.5546558704453, Blast_Score=97, Evalue=2e-21, Organism=Escherichia coli, GI1787712, Length=256, Percent_Identity=28.90625, Blast_Score=96, Evalue=4e-21, Organism=Escherichia coli, GI87081834, Length=222, Percent_Identity=32.8828828828829, Blast_Score=92, Evalue=4e-20, Organism=Escherichia coli, GI1787089, Length=221, Percent_Identity=32.1266968325792, Blast_Score=92, Evalue=6e-20, Organism=Escherichia coli, GI1787105, Length=218, Percent_Identity=33.9449541284404, Blast_Score=90, Evalue=2e-19, Organism=Escherichia coli, GI1788644, Length=262, Percent_Identity=30.1526717557252, Blast_Score=89, Evalue=3e-19, Organism=Escherichia coli, GI1786872, Length=218, Percent_Identity=33.0275229357798, Blast_Score=89, Evalue=5e-19, Organism=Escherichia coli, GI1790162, Length=258, Percent_Identity=24.4186046511628, Blast_Score=85, Evalue=5e-18, Organism=Escherichia coli, GI48994943, Length=232, Percent_Identity=28.448275862069, Blast_Score=85, Evalue=7e-18, Organism=Escherichia coli, GI1788450, Length=243, Percent_Identity=28.3950617283951, Blast_Score=85, Evalue=8e-18, Organism=Escherichia coli, GI1789873, Length=221, Percent_Identity=31.6742081447964, Blast_Score=82, Evalue=4e-17, Organism=Escherichia coli, GI1786319, Length=259, Percent_Identity=27.4131274131274, Blast_Score=80, Evalue=1e-16, Organism=Escherichia coli, GI1790544, Length=246, Percent_Identity=29.2682926829268, Blast_Score=80, Evalue=2e-16, Organism=Escherichia coli, GI1787370, Length=228, Percent_Identity=28.9473684210526, Blast_Score=79, Evalue=3e-16, Organism=Escherichia coli, GI1790739, Length=246, Percent_Identity=29.2682926829268, Blast_Score=79, Evalue=4e-16, Organism=Escherichia coli, GI1786563, Length=253, Percent_Identity=29.2490118577075, Blast_Score=78, Evalue=6e-16, Organism=Escherichia coli, GI87082267, Length=260, Percent_Identity=26.9230769230769, Blast_Score=77, Evalue=1e-15, Organism=Escherichia coli, GI1789586, Length=241, Percent_Identity=30.7053941908714, Blast_Score=77, Evalue=1e-15, Organism=Escherichia coli, GI1790525, Length=235, Percent_Identity=28.0851063829787, Blast_Score=77, Evalue=2e-15, Organism=Escherichia coli, GI1787792, Length=245, Percent_Identity=29.7959183673469, Blast_Score=77, Evalue=2e-15, Organism=Escherichia coli, GI1790467, Length=260, Percent_Identity=26.1538461538462, Blast_Score=75, Evalue=6e-15, Organism=Escherichia coli, GI1788165, Length=226, Percent_Identity=29.2035398230088, Blast_Score=75, Evalue=7e-15, Organism=Escherichia coli, GI1790190, Length=224, Percent_Identity=28.5714285714286, Blast_Score=72, Evalue=6e-14, Organism=Escherichia coli, GI1790534, Length=234, Percent_Identity=29.4871794871795, Blast_Score=71, Evalue=8e-14, Organism=Escherichia coli, GI1787164, Length=211, Percent_Identity=31.7535545023697, Blast_Score=71, Evalue=1e-13, Organism=Escherichia coli, GI48995001, Length=222, Percent_Identity=27.9279279279279, Blast_Score=70, Evalue=2e-13, Organism=Escherichia coli, GI1786253, Length=223, Percent_Identity=28.6995515695067, Blast_Score=69, Evalue=3e-13, Organism=Escherichia coli, GI1786345, Length=224, Percent_Identity=27.2321428571429, Blast_Score=68, Evalue=8e-13, Organism=Escherichia coli, GI1789593, Length=244, Percent_Identity=29.0983606557377, Blast_Score=67, Evalue=2e-12, Organism=Escherichia coli, GI1786654, Length=244, Percent_Identity=29.5081967213115, Blast_Score=66, Evalue=4e-12, Organism=Escherichia coli, GI1788472, Length=220, Percent_Identity=25.4545454545455, Blast_Score=64, Evalue=2e-11, Organism=Escherichia coli, GI1789991, Length=237, Percent_Identity=29.535864978903, Blast_Score=63, Evalue=3e-11, Organism=Escherichia coli, GI1786803, Length=96, Percent_Identity=37.5, Blast_Score=62, Evalue=7e-11, Organism=Caenorhabditis elegans, GI71984940, Length=251, Percent_Identity=30.2788844621514, Blast_Score=79, Evalue=3e-15, Organism=Caenorhabditis elegans, GI17558664, Length=246, Percent_Identity=28.0487804878049, Blast_Score=77, Evalue=1e-14, Organism=Caenorhabditis elegans, GI115534520, Length=236, Percent_Identity=30.0847457627119, Blast_Score=75, Evalue=3e-14, Organism=Caenorhabditis elegans, GI193202349, Length=229, Percent_Identity=27.5109170305677, Blast_Score=73, Evalue=2e-13, Organism=Caenorhabditis elegans, GI193208177, Length=229, Percent_Identity=27.0742358078603, Blast_Score=73, Evalue=2e-13, Organism=Caenorhabditis elegans, GI193209708, Length=224, Percent_Identity=30.8035714285714, Blast_Score=73, Evalue=2e-13, Organism=Caenorhabditis elegans, GI212646699, Length=232, Percent_Identity=28.448275862069, Blast_Score=70, Evalue=1e-12, Organism=Caenorhabditis elegans, GI25146777, Length=242, Percent_Identity=26.8595041322314, Blast_Score=70, Evalue=2e-12, Organism=Caenorhabditis elegans, GI193211017, Length=246, Percent_Identity=25.609756097561, Blast_Score=68, Evalue=6e-12, Organism=Caenorhabditis elegans, GI193211015, Length=246, Percent_Identity=25.609756097561, Blast_Score=68, Evalue=6e-12, Organism=Caenorhabditis elegans, GI71996809, Length=246, Percent_Identity=25.609756097561, Blast_Score=68, Evalue=6e-12, Organism=Caenorhabditis elegans, GI17510237, Length=220, Percent_Identity=29.5454545454545, Blast_Score=67, Evalue=1e-11, Organism=Caenorhabditis elegans, GI71983523, Length=231, Percent_Identity=27.2727272727273, Blast_Score=67, Evalue=1e-11, Organism=Caenorhabditis elegans, GI71983516, Length=231, Percent_Identity=27.2727272727273, Blast_Score=67, Evalue=1e-11, Organism=Caenorhabditis elegans, GI71983510, Length=231, Percent_Identity=27.2727272727273, Blast_Score=67, Evalue=1e-11, Organism=Caenorhabditis elegans, GI115535101, Length=235, Percent_Identity=29.3617021276596, Blast_Score=66, Evalue=3e-11, Organism=Drosophila melanogaster, GI85726357, Length=253, Percent_Identity=27.6679841897233, Blast_Score=69, Evalue=3e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003439 - InterPro: IPR017871 - InterPro: IPR003593 - InterPro: IPR010066 - InterPro: IPR013563 [H]
Pfam domain/function: PF00005 ABC_tran; PF08352 oligo_HPY [H]
EC number: NA
Molecular weight: Translated: 34872; Mature: 34741
Theoretical pI: Translated: 6.93; Mature: 6.93
Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.2 %Cys (Translated Protein) 4.1 %Met (Translated Protein) 6.2 %Cys+Met (Translated Protein) 2.2 %Cys (Mature Protein) 3.8 %Met (Mature Protein) 6.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAQLEIDNLSVEFRTRHGVVRALDAVSLSVSRGEIVGVVGESGSGKSVTAYTVMGLNDAA CCEEEECCCEEEEEHHHHHHHHHHHHHEEECCCCEEEEEECCCCCCEEEEEEEECCCHHH ARVTKGAITMGGIDLLAAPPEAMRELRGREMAMIFQSPRTALNPIRKVGKQIEDVLQEHA HHHHHCCEEECCCCEEECCHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHH ALPRRELKTAAIAALARVRIPDPERRAEAYPFELSGGMCQRVMIAMALACTPSVLIADEP CCCHHHHHHHHHHHHHHCCCCCHHHHCCCCCEECCCHHHHHHHHHHHHHCCCCEEEECCC TTGLDVTTQAVIMDLIREMSRATQMSTLLITHDLGLAGEYCDRIAVMHAGHIVEIAPTEQ CCCCCHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCHHHHHHHHHHHCCCEEEECCHHH LLERPAHPYTRRLLAATPVPESRLDDLNAIPGHLPDLRGALPPCRFSGRCELRQPICDEA HHHCCCCHHHHHHHHCCCCCHHHHHHCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCC ELPWTRVSPQHLVRCRFPLS CCCCCCCCHHHHEEECCCCC >Mature Secondary Structure AQLEIDNLSVEFRTRHGVVRALDAVSLSVSRGEIVGVVGESGSGKSVTAYTVMGLNDAA CEEEECCCEEEEEHHHHHHHHHHHHHEEECCCCEEEEEECCCCCCEEEEEEEECCCHHH ARVTKGAITMGGIDLLAAPPEAMRELRGREMAMIFQSPRTALNPIRKVGKQIEDVLQEHA HHHHHCCEEECCCCEEECCHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHH ALPRRELKTAAIAALARVRIPDPERRAEAYPFELSGGMCQRVMIAMALACTPSVLIADEP CCCHHHHHHHHHHHHHHCCCCCHHHHCCCCCEECCCHHHHHHHHHHHHHCCCCEEEECCC TTGLDVTTQAVIMDLIREMSRATQMSTLLITHDLGLAGEYCDRIAVMHAGHIVEIAPTEQ CCCCCHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCHHHHHHHHHHHCCCEEEECCHHH LLERPAHPYTRRLLAATPVPESRLDDLNAIPGHLPDLRGALPPCRFSGRCELRQPICDEA HHHCCCCHHHHHHHHCCCCCHHHHHHCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCC ELPWTRVSPQHLVRCRFPLS CCCCCCCCHHHHEEECCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ATP; dipeptides [Periplasm]; H2O [C]
Specific reaction: ATP + dipeptides [Periplasm] + H2O = ADP + phosphate + dipeptides [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: NA