| Definition | Bradyrhizobium sp. ORS278 chromosome, complete genome. |
|---|---|
| Accession | NC_009445 |
| Length | 7,456,587 |
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The map label for this gene is atoS [C]
Identifier: 146340438
GI number: 146340438
Start: 3659182
End: 3661467
Strand: Reverse
Name: atoS [C]
Synonym: BRADO3478
Alternate gene names: 146340438
Gene position: 3661467-3659182 (Counterclockwise)
Preceding gene: 146340439
Following gene: 146340437
Centisome position: 49.1
GC content: 66.14
Gene sequence:
>2286_bases ATGATTCGTCAGCGCCTTGCCCTGGGGCTCGGTCTTGGAACGCTGCTTGCGATCGGCGCGGCGTCCGCGGCGCTTGACGT CAAGTCGCGCCACGACGAGGCCTGGGTGACCTCGTCGCTCGACATCCTGCAGAAGACCTCCGATCTGCGTCTACTGCTGA GCGAGGCGGAAGCCAGCTCACGCGGCTTCGCGCTGACGGGCGCAGCCCCTTTCCGCACCGAGTTCGACAATGTCAGCACG AAGATTCCCTCCGCCGTCGCTGATCTGCAGCGCGCGGTTGCCGACAGTCCGATGCCGACCAAGCTTCTCGGTGACACCGC GGCACTGATCGTTCGCAGGATCGACATCGCCGCGGAGCTGATCAGGCTGCGCGCAGCGTCCGACACCGCCGGGCTCCAGG CGCTCGGCAGCCGCGGCGAAGGCCCGGCGACCATGCACACGATCACGGAGAATCTCGACCGCTTCGTCACCGATCAGCGC GCCCTGCTGGCGCAACGCTCGATCACCTCGAAGACCACGGGATCGCTGCTGCTCACGATCGACCTGTGCGGGCTCGCGCT GCTTCTAGTGATCGCAGCCTATCTGATCCGGCACGCTTATCTGGAGGACCGGGCGCTCCGCAGCTCGCTGGTCCGCTCCG AAGCGGAGGCCGTCTCGCTCGCCGAGCGCGCCGAGAAGCAGCATCTCGATCTCGTCGAGGCCCATGAGAAGCTGCGCCAC TCCGCGGAGATCCTGCAGAGCACGTTCAACAGCATGGCCGAAGGCGTGCTCGTGATCGACGCCGCCGATACGGTCGTGTT CTCGAACCCCGCGGTCGAGCGCCTGCTCGGCTATCGTCCCGGCCGGAATCTGTCCGATGTACGCTCTCACCTGCGTGTCT ATGAGAGTGACGGCCTCACGCCGGTCGCGGCACACGATCTGCCGACACCCCGCGCGCTCCGCGGCGAGTCGTTCGACCGC CGTGAGCTGATCATCCATCAGCCCGACCACGATGAGACGCTGCGCCTGATGATCAGCGGCCGTCCGCTGCGCGACAGCGC AGGACGCATCACGGGCGCGGCGATGGTCTATCACGACATCACGGCCGCCCATGAGACCGAGCGGCTGCTCCAGCAGGCGC AAAAGCTCGACGCCATCGGCAAGCTCACCGGCGGCGTCGCGCACGACTTCAACAACATGCTGACGATCATCACCGGCACG ATCGAGACGCTGGCCGACGAGGTGAGAGACCGTCCGGCCGCGGCGGCCACCGCCGCGCTGATCGGCCAGGCCGCAGACCG CTGCACCGAGCTGATCCGGCATCTGCTGGCTTTCGCCCGCAAGCAGCCGCTGCATCCGCGCGACAGCGACGTCAACAGCA CGATCCTGGACATCGCCAAGCTGCTGCGGCCGACCCTCGGCGAGCAGATCGAGATCAATTCGATCCTGGAAGAGGAGACG CTGATCGCCCACATCGACTCAGCGCAGCTTGCCAACTCGCTGGTCAACATGGCCATCAACGCCCGCGACGCGATGCCCAA TGGCGGCAAGCTGCTGCTGGAATCCCGCCGGGTGGAACTCGACGATGCCTATGCCGCAGCCAATGCCGGCGTGACGCCGG GCTCCTACATCATGGTGGCCGTCAGCGACACCGGCACGGGCATGTCGCCCGCCGTGCGCGATCGCGCGTTCGAGCCGTTC TTCACCACCAAGGAAGCGGGCAAAGGCTCCGGCCTCGGCCTGAGCATGGTCTACGGCTTCGTCAAGCAGTCGGGCGGTCA CATCAAGATCTACAGCGAGGAAGGCCGGGGCACCACCATCCGCCTGTACATTCCGGCGCCCAAGGGGCAGACCGCAACGC CTGCCCTGCCCGATCCACCGCCCCCGCGCGGAGATGAGACCATCTTCATCGTCGAGGACGACCTGCTGGTGCAGGACTTC GTCGTCGCCCAGCTGCAAAGCCTGGGCTACAAGACGATGACCGCTTCCACCGGTGTCGAGGCGCTGGCCAAGATCGAATC CGGGCAGCCCTTCGATCTGTTGTTCACCGACGTCATCATGCCAGGTGGCGTCAATGGCAAGGAACTTGCCGAGGAGACGC TGCGGCAGCGGCCAGGCACAAAGGTCCTGTACACCTCGGGCTACACCGATAATGCGATGGTGGAACACGGCCGCATCGAT CACGCCTCGCTCCTGCTCACCAAGCCCTATCGCAAGTCAGAGCTCGCCCAGATGGTGCGTCTCGCCTTGCACAGTTCGGA TGCCCCCCGCGAAGTCGCCTCGCCGGGCCGCGTCCTGGCCAACTGA
Upstream 100 bases:
>100_bases AGTTCCTTCGACGCAGCTGCACCGGTCGCCGGATGCGTGGGGCTGGTCGCAGTGATCGACCGGTCAGCCGGCGACACCTT TGGATGATTGAGACACGCGG
Downstream 100 bases:
>100_bases GTTCGTTCGCCGCCTGCTCAACGTCCTGGAACCCCGAACGGGTTACGTGTGCAATCCCCATGGAACCTGAGCCGGATGAT TGGCAGTCCGGCACGACACA
Product: sensor histidine kinase
Products: NA
Alternate protein names: Blue-light-activated histidine kinase; Response regulator [H]
Number of amino acids: Translated: 761; Mature: 761
Protein sequence:
>761_residues MIRQRLALGLGLGTLLAIGAASAALDVKSRHDEAWVTSSLDILQKTSDLRLLLSEAEASSRGFALTGAAPFRTEFDNVST KIPSAVADLQRAVADSPMPTKLLGDTAALIVRRIDIAAELIRLRAASDTAGLQALGSRGEGPATMHTITENLDRFVTDQR ALLAQRSITSKTTGSLLLTIDLCGLALLLVIAAYLIRHAYLEDRALRSSLVRSEAEAVSLAERAEKQHLDLVEAHEKLRH SAEILQSTFNSMAEGVLVIDAADTVVFSNPAVERLLGYRPGRNLSDVRSHLRVYESDGLTPVAAHDLPTPRALRGESFDR RELIIHQPDHDETLRLMISGRPLRDSAGRITGAAMVYHDITAAHETERLLQQAQKLDAIGKLTGGVAHDFNNMLTIITGT IETLADEVRDRPAAAATAALIGQAADRCTELIRHLLAFARKQPLHPRDSDVNSTILDIAKLLRPTLGEQIEINSILEEET LIAHIDSAQLANSLVNMAINARDAMPNGGKLLLESRRVELDDAYAAANAGVTPGSYIMVAVSDTGTGMSPAVRDRAFEPF FTTKEAGKGSGLGLSMVYGFVKQSGGHIKIYSEEGRGTTIRLYIPAPKGQTATPALPDPPPPRGDETIFIVEDDLLVQDF VVAQLQSLGYKTMTASTGVEALAKIESGQPFDLLFTDVIMPGGVNGKELAEETLRQRPGTKVLYTSGYTDNAMVEHGRID HASLLLTKPYRKSELAQMVRLALHSSDAPREVASPGRVLAN
Sequences:
>Translated_761_residues MIRQRLALGLGLGTLLAIGAASAALDVKSRHDEAWVTSSLDILQKTSDLRLLLSEAEASSRGFALTGAAPFRTEFDNVST KIPSAVADLQRAVADSPMPTKLLGDTAALIVRRIDIAAELIRLRAASDTAGLQALGSRGEGPATMHTITENLDRFVTDQR ALLAQRSITSKTTGSLLLTIDLCGLALLLVIAAYLIRHAYLEDRALRSSLVRSEAEAVSLAERAEKQHLDLVEAHEKLRH SAEILQSTFNSMAEGVLVIDAADTVVFSNPAVERLLGYRPGRNLSDVRSHLRVYESDGLTPVAAHDLPTPRALRGESFDR RELIIHQPDHDETLRLMISGRPLRDSAGRITGAAMVYHDITAAHETERLLQQAQKLDAIGKLTGGVAHDFNNMLTIITGT IETLADEVRDRPAAAATAALIGQAADRCTELIRHLLAFARKQPLHPRDSDVNSTILDIAKLLRPTLGEQIEINSILEEET LIAHIDSAQLANSLVNMAINARDAMPNGGKLLLESRRVELDDAYAAANAGVTPGSYIMVAVSDTGTGMSPAVRDRAFEPF FTTKEAGKGSGLGLSMVYGFVKQSGGHIKIYSEEGRGTTIRLYIPAPKGQTATPALPDPPPPRGDETIFIVEDDLLVQDF VVAQLQSLGYKTMTASTGVEALAKIESGQPFDLLFTDVIMPGGVNGKELAEETLRQRPGTKVLYTSGYTDNAMVEHGRID HASLLLTKPYRKSELAQMVRLALHSSDAPREVASPGRVLAN >Mature_761_residues MIRQRLALGLGLGTLLAIGAASAALDVKSRHDEAWVTSSLDILQKTSDLRLLLSEAEASSRGFALTGAAPFRTEFDNVST KIPSAVADLQRAVADSPMPTKLLGDTAALIVRRIDIAAELIRLRAASDTAGLQALGSRGEGPATMHTITENLDRFVTDQR ALLAQRSITSKTTGSLLLTIDLCGLALLLVIAAYLIRHAYLEDRALRSSLVRSEAEAVSLAERAEKQHLDLVEAHEKLRH SAEILQSTFNSMAEGVLVIDAADTVVFSNPAVERLLGYRPGRNLSDVRSHLRVYESDGLTPVAAHDLPTPRALRGESFDR RELIIHQPDHDETLRLMISGRPLRDSAGRITGAAMVYHDITAAHETERLLQQAQKLDAIGKLTGGVAHDFNNMLTIITGT IETLADEVRDRPAAAATAALIGQAADRCTELIRHLLAFARKQPLHPRDSDVNSTILDIAKLLRPTLGEQIEINSILEEET LIAHIDSAQLANSLVNMAINARDAMPNGGKLLLESRRVELDDAYAAANAGVTPGSYIMVAVSDTGTGMSPAVRDRAFEPF FTTKEAGKGSGLGLSMVYGFVKQSGGHIKIYSEEGRGTTIRLYIPAPKGQTATPALPDPPPPRGDETIFIVEDDLLVQDF VVAQLQSLGYKTMTASTGVEALAKIESGQPFDLLFTDVIMPGGVNGKELAEETLRQRPGTKVLYTSGYTDNAMVEHGRID HASLLLTKPYRKSELAQMVRLALHSSDAPREVASPGRVLAN
Specific function: Photosensitive kinase and response regulator that is involved in increased bacterial virulence upon exposure to light [H]
COG id: COG0642
COG function: function code T; Signal transduction histidine kinase
Gene ontology:
Cell location: Integral Membrane Protein. Inner Membrane [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 response regulatory domain [H]
Homologues:
Organism=Escherichia coli, GI1788549, Length=382, Percent_Identity=27.7486910994764, Blast_Score=125, Evalue=1e-29, Organism=Escherichia coli, GI1790436, Length=237, Percent_Identity=27.4261603375527, Blast_Score=96, Evalue=9e-21, Organism=Escherichia coli, GI87081816, Length=211, Percent_Identity=24.1706161137441, Blast_Score=70, Evalue=7e-13, Organism=Escherichia coli, GI1790300, Length=376, Percent_Identity=25.7978723404255, Blast_Score=69, Evalue=1e-12, Organism=Escherichia coli, GI48994928, Length=224, Percent_Identity=26.7857142857143, Blast_Score=65, Evalue=1e-11, Organism=Escherichia coli, GI1788713, Length=277, Percent_Identity=29.9638989169675, Blast_Score=65, Evalue=1e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003594 - InterPro: IPR011006 - InterPro: IPR001610 - InterPro: IPR000014 - InterPro: IPR000700 - InterPro: IPR013767 - InterPro: IPR004358 - InterPro: IPR003661 - InterPro: IPR005467 - InterPro: IPR009082 - InterPro: IPR001789 [H]
Pfam domain/function: PF02518 HATPase_c; PF00512 HisKA; PF00989 PAS; PF00072 Response_reg [H]
EC number: =2.7.13.3 [H]
Molecular weight: Translated: 82068; Mature: 82068
Theoretical pI: Translated: 6.02; Mature: 6.02
Prosite motif: PS50112 PAS ; PS50113 PAC ; PS50110 RESPONSE_REGULATORY ; PS50109 HIS_KIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIRQRLALGLGLGTLLAIGAASAALDVKSRHDEAWVTSSLDILQKTSDLRLLLSEAEASS CCHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCHHHHHHHHHHCCCC RGFALTGAAPFRTEFDNVSTKIPSAVADLQRAVADSPMPTKLLGDTAALIVRRIDIAAEL CCEEEECCCCCCCCCCCHHHHCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHH IRLRAASDTAGLQALGSRGEGPATMHTITENLDRFVTDQRALLAQRSITSKTTGSLLLTI HHHHCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEH DLCGLALLLVIAAYLIRHAYLEDRALRSSLVRSEAEAVSLAERAEKQHLDLVEAHEKLRH HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH SAEILQSTFNSMAEGVLVIDAADTVVFSNPAVERLLGYRPGRNLSDVRSHLRVYESDGLT HHHHHHHHHHHHHCCEEEEEECCEEEECCHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCC PVAAHDLPTPRALRGESFDRRELIIHQPDHDETLRLMISGRPLRDSAGRITGAAMVYHDI EEECCCCCCCCCCCCCCCCCCCEEEECCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHH TAAHETERLLQQAQKLDAIGKLTGGVAHDFNNMLTIITGTIETLADEVRDRPAAAATAAL HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCEEEEEHHHHHHHHHHHHCCCHHHHHHHH IGQAADRCTELIRHLLAFARKQPLHPRDSDVNSTILDIAKLLRPTLGEQIEINSILEEET HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEHHHHHHHHH LIAHIDSAQLANSLVNMAINARDAMPNGGKLLLESRRVELDDAYAAANAGVTPGSYIMVA HHEECCHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCHHHHHCCCCCCCCCEEEEE VSDTGTGMSPAVRDRAFEPFFTTKEAGKGSGLGLSMVYGFVKQSGGHIKIYSEEGRGTTI EECCCCCCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCEE RLYIPAPKGQTATPALPDPPPPRGDETIFIVEDDLLVQDFVVAQLQSLGYKTMTASTGVE EEEEECCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHCCCEEEEHHHHHH ALAKIESGQPFDLLFTDVIMPGGVNGKELAEETLRQRPGTKVLYTSGYTDNAMVEHGRID HHHHHCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCHHCCCCCC HASLLLTKPYRKSELAQMVRLALHSSDAPREVASPGRVLAN CCEEEEECCCCHHHHHHHHHHHHHCCCCCHHHCCCCCCCCC >Mature Secondary Structure MIRQRLALGLGLGTLLAIGAASAALDVKSRHDEAWVTSSLDILQKTSDLRLLLSEAEASS CCHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCHHHHHHHHHHCCCC RGFALTGAAPFRTEFDNVSTKIPSAVADLQRAVADSPMPTKLLGDTAALIVRRIDIAAEL CCEEEECCCCCCCCCCCHHHHCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHH IRLRAASDTAGLQALGSRGEGPATMHTITENLDRFVTDQRALLAQRSITSKTTGSLLLTI HHHHCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEH DLCGLALLLVIAAYLIRHAYLEDRALRSSLVRSEAEAVSLAERAEKQHLDLVEAHEKLRH HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH SAEILQSTFNSMAEGVLVIDAADTVVFSNPAVERLLGYRPGRNLSDVRSHLRVYESDGLT HHHHHHHHHHHHHCCEEEEEECCEEEECCHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCC PVAAHDLPTPRALRGESFDRRELIIHQPDHDETLRLMISGRPLRDSAGRITGAAMVYHDI EEECCCCCCCCCCCCCCCCCCCEEEECCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHH TAAHETERLLQQAQKLDAIGKLTGGVAHDFNNMLTIITGTIETLADEVRDRPAAAATAAL HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCEEEEEHHHHHHHHHHHHCCCHHHHHHHH IGQAADRCTELIRHLLAFARKQPLHPRDSDVNSTILDIAKLLRPTLGEQIEINSILEEET HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEHHHHHHHHH LIAHIDSAQLANSLVNMAINARDAMPNGGKLLLESRRVELDDAYAAANAGVTPGSYIMVA HHEECCHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCHHHHHCCCCCCCCCEEEEE VSDTGTGMSPAVRDRAFEPFFTTKEAGKGSGLGLSMVYGFVKQSGGHIKIYSEEGRGTTI EECCCCCCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCEE RLYIPAPKGQTATPALPDPPPPRGDETIFIVEDDLLVQDFVVAQLQSLGYKTMTASTGVE EEEEECCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHCCCEEEEHHHHHH ALAKIESGQPFDLLFTDVIMPGGVNGKELAEETLRQRPGTKVLYTSGYTDNAMVEHGRID HHHHHCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCHHCCCCCC HASLLLTKPYRKSELAQMVRLALHSSDAPREVASPGRVLAN CCEEEEECCCCHHHHHHHHHHHHHCCCCCHHHCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA