| Definition | Bradyrhizobium sp. ORS278 chromosome, complete genome. |
|---|---|
| Accession | NC_009445 |
| Length | 7,456,587 |
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The map label for this gene is 146340271
Identifier: 146340271
GI number: 146340271
Start: 3489484
End: 3490077
Strand: Direct
Name: 146340271
Synonym: BRADO3292
Alternate gene names: NA
Gene position: 3489484-3490077 (Clockwise)
Preceding gene: 146340270
Following gene: 146340273
Centisome position: 46.8
GC content: 59.76
Gene sequence:
>594_bases ATGACGTCGAAAACTCTACGCGCTTGGTTCTTTTCTCTGGGGACGTTCTTAGGCTCGATGTCGGGGACGGGTTGCGCGGG TGAGCGGGCCGACTCCGGGTTCGTCCTGGACCTGGATCGATACAGCGGCACCTGGTTTCAGCTGAGGGACAGTGTCGATG ACAATGCGGCGGAGTTCGAGCAACGAGAAAAGGTCAAGGACCGCTGCGTGGGCACGCGGGTTACGTACGCCGCTCAAGCG GATGGCACGATTCGCTTGCGAAACGAATGCTTCGAGGGCTCGTTGGATGGGAGACGCATTGTGATCGAAGGATCTGCCCG TCCCGTCAATGCCAACCGCACTGAGTTCAAGATCCGTTTCGATCCGCTGTACTTGCGGCCTTTCGAGTTCGACTACTGGG TAGTCTGGGTCGATCCGGACTACCAGATGGCTCTCCTCTCGTCTCCAAGGTCACGCGGATACACGATCCTCAGCCGTGTG CCCGATCCGTCTCCCGCTCTCCTGGCGATGGCCGAAGAGGTGGCGCTTCGAAAAGGGTATTCCAATTCCCTAACCGTCGA GACCCCTCAAGGCCCGAGGGCCGGCGGCCCATAA
Upstream 100 bases:
>100_bases TCACGGCGTTCTCGGCTCGCTATTGGATTACAGCAAGACGATGCATAGATGCCGCCGCGACCGTATCGGTTCCTGTCAAT GGAAGCACAGGCTCTAACTG
Downstream 100 bases:
>100_bases CGGACCGCTCGCGCCAGCTCCAGCGCGCCGGGCAGACGCGCGACGCAACGACGTGCTGCAGGCGAGGGCCCCGTTAAAAT GAGGGTAACCGCCATTGACG
Product: putative outer membrane lipocalin, blc-like
Products: NA
Alternate protein names: Outer Membrane Lipoprotein Blc; Lipocalin Family Protein; Lipocalin-Like; Outer Membrane Lipocalin Blc-Like; Lipocalin-Like Domain-Containing Protein; Lipocalin-Like Lipoprotein; Lipocalin; Exported Protein
Number of amino acids: Translated: 197; Mature: 196
Protein sequence:
>197_residues MTSKTLRAWFFSLGTFLGSMSGTGCAGERADSGFVLDLDRYSGTWFQLRDSVDDNAAEFEQREKVKDRCVGTRVTYAAQA DGTIRLRNECFEGSLDGRRIVIEGSARPVNANRTEFKIRFDPLYLRPFEFDYWVVWVDPDYQMALLSSPRSRGYTILSRV PDPSPALLAMAEEVALRKGYSNSLTVETPQGPRAGGP
Sequences:
>Translated_197_residues MTSKTLRAWFFSLGTFLGSMSGTGCAGERADSGFVLDLDRYSGTWFQLRDSVDDNAAEFEQREKVKDRCVGTRVTYAAQA DGTIRLRNECFEGSLDGRRIVIEGSARPVNANRTEFKIRFDPLYLRPFEFDYWVVWVDPDYQMALLSSPRSRGYTILSRV PDPSPALLAMAEEVALRKGYSNSLTVETPQGPRAGGP >Mature_196_residues TSKTLRAWFFSLGTFLGSMSGTGCAGERADSGFVLDLDRYSGTWFQLRDSVDDNAAEFEQREKVKDRCVGTRVTYAAQAD GTIRLRNECFEGSLDGRRIVIEGSARPVNANRTEFKIRFDPLYLRPFEFDYWVVWVDPDYQMALLSSPRSRGYTILSRVP DPSPALLAMAEEVALRKGYSNSLTVETPQGPRAGGP
Specific function: Unknown
COG id: COG3040
COG function: function code M; Bacterial lipocalin
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 22055; Mature: 21924
Theoretical pI: Translated: 5.41; Mature: 5.41
Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS00213 LIPOCALIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTSKTLRAWFFSLGTFLGSMSGTGCAGERADSGFVLDLDRYSGTWFQLRDSVDDNAAEFE CCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCEEEEECCCCCCHHHHH QREKVKDRCVGTRVTYAAQADGTIRLRNECFEGSLDGRRIVIEGSARPVNANRTEFKIRF HHHHHHHHHCCCEEEEEECCCCEEEEECCCCCCCCCCCEEEEECCCCCCCCCCEEEEEEE DPLYLRPFEFDYWVVWVDPDYQMALLSSPRSRGYTILSRVPDPSPALLAMAEEVALRKGY CCEEEEEECCCEEEEEECCCCEEEEECCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCC SNSLTVETPQGPRAGGP CCCEEEECCCCCCCCCC >Mature Secondary Structure TSKTLRAWFFSLGTFLGSMSGTGCAGERADSGFVLDLDRYSGTWFQLRDSVDDNAAEFE CCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCEEEEECCCCCCHHHHH QREKVKDRCVGTRVTYAAQADGTIRLRNECFEGSLDGRRIVIEGSARPVNANRTEFKIRF HHHHHHHHHCCCEEEEEECCCCEEEEECCCCCCCCCCCEEEEECCCCCCCCCCEEEEEEE DPLYLRPFEFDYWVVWVDPDYQMALLSSPRSRGYTILSRVPDPSPALLAMAEEVALRKGY CCEEEEEECCCEEEEEECCCCEEEEECCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCC SNSLTVETPQGPRAGGP CCCEEEECCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA