| Definition | Bradyrhizobium sp. ORS278 chromosome, complete genome. |
|---|---|
| Accession | NC_009445 |
| Length | 7,456,587 |
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The map label for this gene is 146339704
Identifier: 146339704
GI number: 146339704
Start: 2900003
End: 2900782
Strand: Reverse
Name: 146339704
Synonym: BRADO2701
Alternate gene names: NA
Gene position: 2900782-2900003 (Counterclockwise)
Preceding gene: 146339705
Following gene: 146339698
Centisome position: 38.9
GC content: 64.36
Gene sequence:
>780_bases ATGTCGCCAGCCGAAGCGCGTCTGAAGGAAGTGCCGTCGAACATGACGGAAGCGGAGTGGTCGCAGCGGGTCAATCTCGC CGCAGCCTACCGTCTGGTGGCGATGTTCGGCTGGGACGATCTGGTCGACACACACATCTCGGCCCGCGTCCCCGGCCCCG AGCATCACTTCCTCATCAACCCCTACGGCCTGTTGTTCGAGGAGATCACCGCGTCGAGCCTGATCAAGGTCGACCTCTAC GGCAACCAGCTGTCCGAGAGCGAGTACAGCATCAATCCCGCCGGCTTCACCATCCACTCGGCGATTCACGAGGTGCGCGA GGATGCCGGCTGCGTCATCCACCTGCATACGCTCGACGGCGTCGCGGTGTCGAGCTGCGCCGACGGCCTGCTGCCGCTGA ACCAGATCGCGCAATACGTGACCCACGACCTCGCCTATCACGACTACGAAGGCGTGGCACTGGACCATGATGAGCGGCCC CGGCTGCAGCGCGACCTCGGCACCAAGAACCACATGCTACTGCGCAATCACGGTACGCTGACCGTCGGACGTTCGGTCGC CTCGGCGTTCGAGCGCATGTATCACCTGGAGCGCGCCTGCTCGATCCAGGTGCGTACCCGCACGCTCGGACCCACGGCCT ATCCGGTACGCGAGGAGGTCGTCGACAAGAACGCCAAGCTGTTCGACAACGCGGAACGCATCGAGCTCCGTTCGACCCAG CTGGTCTGGCCGCCGCTGCTGCGCCGGCTCGACCGGATCAATCCAGGCTATCGCAATTGA
Upstream 100 bases:
>100_bases TGCTCCGCCAATCGACATGACTGCCCTCCCGGCTCCGCGCCTTGCCGAGCCGGGAGAGGCAGCTTACGCTCGGGTCAACC TCTCGAGACCGGAGCATGCC
Downstream 100 bases:
>100_bases TCTTGCTGGGCTGATCGGCTATCAACAGTTCATCACCCTCTACGCTATTTGGAATGAAACGCCGCCCAATTCCGGGCGGC GTTTTTTACTTGCTCCTCAG
Product: aldolase II superfamily protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 259; Mature: 258
Protein sequence:
>259_residues MSPAEARLKEVPSNMTEAEWSQRVNLAAAYRLVAMFGWDDLVDTHISARVPGPEHHFLINPYGLLFEEITASSLIKVDLY GNQLSESEYSINPAGFTIHSAIHEVREDAGCVIHLHTLDGVAVSSCADGLLPLNQIAQYVTHDLAYHDYEGVALDHDERP RLQRDLGTKNHMLLRNHGTLTVGRSVASAFERMYHLERACSIQVRTRTLGPTAYPVREEVVDKNAKLFDNAERIELRSTQ LVWPPLLRRLDRINPGYRN
Sequences:
>Translated_259_residues MSPAEARLKEVPSNMTEAEWSQRVNLAAAYRLVAMFGWDDLVDTHISARVPGPEHHFLINPYGLLFEEITASSLIKVDLY GNQLSESEYSINPAGFTIHSAIHEVREDAGCVIHLHTLDGVAVSSCADGLLPLNQIAQYVTHDLAYHDYEGVALDHDERP RLQRDLGTKNHMLLRNHGTLTVGRSVASAFERMYHLERACSIQVRTRTLGPTAYPVREEVVDKNAKLFDNAERIELRSTQ LVWPPLLRRLDRINPGYRN >Mature_258_residues SPAEARLKEVPSNMTEAEWSQRVNLAAAYRLVAMFGWDDLVDTHISARVPGPEHHFLINPYGLLFEEITASSLIKVDLYG NQLSESEYSINPAGFTIHSAIHEVREDAGCVIHLHTLDGVAVSSCADGLLPLNQIAQYVTHDLAYHDYEGVALDHDERPR LQRDLGTKNHMLLRNHGTLTVGRSVASAFERMYHLERACSIQVRTRTLGPTAYPVREEVVDKNAKLFDNAERIELRSTQL VWPPLLRRLDRINPGYRN
Specific function: Unknown
COG id: COG0235
COG function: function code G; Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the aldolase class II family [H]
Homologues:
Organism=Homo sapiens, GI29826319, Length=187, Percent_Identity=47.5935828877005, Blast_Score=177, Evalue=1e-44, Organism=Homo sapiens, GI29826323, Length=187, Percent_Identity=47.5935828877005, Blast_Score=177, Evalue=1e-44, Organism=Homo sapiens, GI29826325, Length=187, Percent_Identity=47.5935828877005, Blast_Score=176, Evalue=1e-44, Organism=Homo sapiens, GI29826321, Length=187, Percent_Identity=47.5935828877005, Blast_Score=176, Evalue=1e-44, Organism=Homo sapiens, GI297307160, Length=194, Percent_Identity=41.2371134020619, Blast_Score=154, Evalue=9e-38, Organism=Homo sapiens, GI297307158, Length=194, Percent_Identity=41.2371134020619, Blast_Score=154, Evalue=1e-37, Organism=Homo sapiens, GI9257192, Length=194, Percent_Identity=41.2371134020619, Blast_Score=154, Evalue=1e-37, Organism=Homo sapiens, GI89276787, Length=194, Percent_Identity=41.2371134020619, Blast_Score=154, Evalue=1e-37, Organism=Homo sapiens, GI9257190, Length=194, Percent_Identity=41.2371134020619, Blast_Score=154, Evalue=1e-37, Organism=Homo sapiens, GI9943848, Length=196, Percent_Identity=40.8163265306122, Blast_Score=153, Evalue=2e-37, Organism=Homo sapiens, GI9951927, Length=196, Percent_Identity=40.8163265306122, Blast_Score=153, Evalue=2e-37, Organism=Homo sapiens, GI62912453, Length=196, Percent_Identity=40.8163265306122, Blast_Score=153, Evalue=2e-37, Organism=Caenorhabditis elegans, GI115533218, Length=248, Percent_Identity=38.3064516129032, Blast_Score=165, Evalue=2e-41, Organism=Caenorhabditis elegans, GI115533216, Length=248, Percent_Identity=38.3064516129032, Blast_Score=164, Evalue=3e-41, Organism=Caenorhabditis elegans, GI71989555, Length=248, Percent_Identity=32.6612903225806, Blast_Score=126, Evalue=1e-29, Organism=Caenorhabditis elegans, GI71989560, Length=248, Percent_Identity=32.6612903225806, Blast_Score=126, Evalue=1e-29, Organism=Caenorhabditis elegans, GI71989550, Length=248, Percent_Identity=32.6612903225806, Blast_Score=126, Evalue=1e-29, Organism=Caenorhabditis elegans, GI71989541, Length=248, Percent_Identity=32.6612903225806, Blast_Score=126, Evalue=1e-29, Organism=Caenorhabditis elegans, GI71989544, Length=248, Percent_Identity=32.6612903225806, Blast_Score=126, Evalue=1e-29, Organism=Drosophila melanogaster, GI281363755, Length=191, Percent_Identity=38.7434554973822, Blast_Score=135, Evalue=3e-32, Organism=Drosophila melanogaster, GI281363751, Length=191, Percent_Identity=38.7434554973822, Blast_Score=135, Evalue=3e-32, Organism=Drosophila melanogaster, GI24655690, Length=191, Percent_Identity=38.7434554973822, Blast_Score=135, Evalue=3e-32, Organism=Drosophila melanogaster, GI24655685, Length=191, Percent_Identity=38.7434554973822, Blast_Score=135, Evalue=3e-32, Organism=Drosophila melanogaster, GI281363763, Length=191, Percent_Identity=38.7434554973822, Blast_Score=135, Evalue=4e-32, Organism=Drosophila melanogaster, GI281363757, Length=191, Percent_Identity=38.7434554973822, Blast_Score=135, Evalue=4e-32, Organism=Drosophila melanogaster, GI17136738, Length=191, Percent_Identity=38.7434554973822, Blast_Score=135, Evalue=4e-32, Organism=Drosophila melanogaster, GI281363761, Length=191, Percent_Identity=38.7434554973822, Blast_Score=135, Evalue=4e-32, Organism=Drosophila melanogaster, GI281363759, Length=191, Percent_Identity=38.7434554973822, Blast_Score=135, Evalue=4e-32, Organism=Drosophila melanogaster, GI281363753, Length=191, Percent_Identity=38.7434554973822, Blast_Score=135, Evalue=4e-32,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001303 [H]
Pfam domain/function: PF00596 Aldolase_II [H]
EC number: NA
Molecular weight: Translated: 29246; Mature: 29115
Theoretical pI: Translated: 6.32; Mature: 6.32
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSPAEARLKEVPSNMTEAEWSQRVNLAAAYRLVAMFGWDDLVDTHISARVPGPEHHFLIN CCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHEECCCCCCCEEEEC PYGLLFEEITASSLIKVDLYGNQLSESEYSINPAGFTIHSAIHEVREDAGCVIHLHTLDG HHHHHHHHHHHHHEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEECCC VAVSSCADGLLPLNQIAQYVTHDLAYHDYEGVALDHDERPRLQRDLGTKNHMLLRNHGTL HHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCEEECCCCCCHHHHHCCCCCCEEEECCCCE TVGRSVASAFERMYHLERACSIQVRTRTLGPTAYPVREEVVDKNAKLFDNAERIELRSTQ EEHHHHHHHHHHHHHHHHHHEEEEEEEECCCCCCHHHHHHHCCCCHHHCCHHHEEECCCE LVWPPLLRRLDRINPGYRN ECCHHHHHHHHHCCCCCCC >Mature Secondary Structure SPAEARLKEVPSNMTEAEWSQRVNLAAAYRLVAMFGWDDLVDTHISARVPGPEHHFLIN CCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHEECCCCCCCEEEEC PYGLLFEEITASSLIKVDLYGNQLSESEYSINPAGFTIHSAIHEVREDAGCVIHLHTLDG HHHHHHHHHHHHHEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEECCC VAVSSCADGLLPLNQIAQYVTHDLAYHDYEGVALDHDERPRLQRDLGTKNHMLLRNHGTL HHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCEEECCCCCCHHHHHCCCCCCEEEECCCCE TVGRSVASAFERMYHLERACSIQVRTRTLGPTAYPVREEVVDKNAKLFDNAERIELRSTQ EEHHHHHHHHHHHHHHHHHHEEEEEEEECCCCCCHHHHHHHCCCCHHHCCHHHEEECCCE LVWPPLLRRLDRINPGYRN ECCHHHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 10984043 [H]