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The map label for this gene is ycbB [H]

Identifier: 146338286

GI number: 146338286

Start: 1265173

End: 1267248

Strand: Reverse

Name: ycbB [H]

Synonym: BRADO1190

Alternate gene names: 146338286

Gene position: 1267248-1265173 (Counterclockwise)

Preceding gene: 146338287

Following gene: 146338285

Centisome position: 17.0

GC content: 67.44

Gene sequence:

>2076_bases
ATGGCTGTCGCGGCAACTTTCCTCGCGGTGTCCACGACCTCCGCTCTCGCCCAGAACGATCCGCCCCGCAGCAGCCCGGC
AGAGCTTGCGATCGACGCAGCGATCCCGTTCCCCGAGCCGGCCAACGTGCCGCCGCCGACCGCCAGCGACTTCAAGCTCG
ACACCACCGCTACCGTTTCGCCCAGCCAGGCCAAGGCGCCCGAGCCGGTGAAGCCGGCCGATACGGCCGCAGCGCCCGCA
GCCGATCCCGCCAAGACCGTGACGGCGCCGCCGCCGGCAGCGGCTCCCGCCACAGCGACGACTCCGGCGCCGGCCGGCGA
GCCGGTCAAAGCCGCGAGCAGCGTTCCCGCCGCCGACCAGCCGGTCGCCGATCGCCTGCGCGACCTGATCGCCACCAAGG
GGACCAAGTATTTCGACCGCAAGGCCGAGCGCGCCGCCGTCGAGAAGTTCTACACCGGCCGCGACTACGCGCCGATCTGG
ACGCAGAGCGGCAATCTCACCGCCGCCGCCAAGGGCGTGATCGCGCGCCTCAAGGATGCGGCCGCGGACGGCCTCAACCC
CGCCGACTATCCGGTGCCGGATTTCGCCGCGGCCGGCTCCGCGCCGGACGCGCTGGCGGAGGCCGATCTCAAGCTCACCG
AGAGCATGATGGACTACGCCCGTCAGGCCCAGAGCGGCCGCATGCACTGGTCGCAGGTCTCGGCCGATATCCAATATCCC
GAGCATCCGATCGATCCGAACGAGGTGCTGGCCAACGTCACCGGCGCCAAGGATGCCTCCGCCGCGCTGGAGAGCTACAA
CCCGCCGCACAAGCTCTACAAGCTGCTGAAGGCCAAGCTCGCCGAACTTCGCGGCGACCGCGACGGTACGCCCATCATCA
TCGAGGACGGCGAACCGCTGAAATACACCCCTGCCCGCGGCAAGAACGCCCCGGAGGCCGAGGCGCAGATGTCCGACCCG
CGCGTGCCGAAGCTGCGCGCCAAGCTCGGCCTCACCGAGAACCTCGACGACATCCGCTACGACGCGAAGGTCGCCGCCGC
CGTTCGCAAATTCCAGGACAGCGTCGATCTCAAGCCGACCGGCGTGCTCGACGACCGCACCGTCAAGGCGCTCAACACGC
CCAAACGCGACAAGCAGATCGACACCGTCATCGTCAATATGGAGCGCTGGCGCTGGCTGCCCCGCGAGCTCGGCGCACCG
GCGATCGGCAATGCCTATGTCATCCTCAACATCCCCGACTACACGCTGAAGGTGATGCAGCACGGCGCGCAGGTGTGGAC
CACCCGCGTCGTCACCGGCAAGCCCGGCCAGCACGCGACGCCGCTGCTGAGCGAGACGATGAAGTTCATCACGGTCAACC
CGACCTGGAACGTGCCGCCGTCGATCATCTACAACGAGTATCTGCCGGCGCTGCAGCAGGACCCGACCGTGCTCGACCGC
ATGGGCCTGCGGTTGGAGCGCGCCCGCGACGGCTCGATCCACATCTCGCAGCCGCCGGGCGAGGCCAACGCGCTCGGCCG
CATTCGCTTCAATTTCCCGAACAAGTTCCTGGTCTATCAGCACGACACGCCGGATAAGAACCTGTTCGCGAAGGAGGACC
GCGCCTTCAGCCATGGCTGCATGCGGGTGCAATATCCGGATCAGTATGCGTCGGTGCTGCTCAACCTCACCATGCCGGGC
GAGCGCTATACGCCTGAGCGCATCCGCGGCATGTATGGCTCGAGCGAGATCGACCTGAAATTCCCGACCCCGATTCCGGT
CAACATCACCTACCAGACCGCCTTCGTGGACGATGCCGGCAAGCTGCAATTCCGCAAGGACGTCTATGGCCGCGACGCGA
CCATGATCGCGATCCTCAAGAACAGCCGCGGCAAGGATCTCGAGAACGTCGTCGCCCACGCCCAACCGAGCTATTCGCGT
CCGAAAGGACCGCTGCCGAACTCGGTGAATGTCAGCGACAACAGCTTCTCGTCCGGCTCCTCGGGTCCGAACTTCTTCGA
ACGTCTGTTCGGCGGCGGCCAGCCGACACCGCCGGCGCCGGTCGGCCGCCCGCCTCGCCGGGTGTTCACGCGCTGA

Upstream 100 bases:

>100_bases
ACCTTGTGACCGACCCTGTTCCGAACCGCGGGACAGATCATTCGAGGGATTGACGATGCGAGATTGTGTGACCACCCGTG
GCGGATATGACCGCGTGCTG

Downstream 100 bases:

>100_bases
CCGGGTTCCCTCAGCCGCCGCAAATCCCGATGTGAGATCAAAGGCCTCGCCATCCGGCGGGGCCTTTGCTTTAGGTTAAC
CACAATGGTCAACCAAGATT

Product: putative signal peptide

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 691; Mature: 690

Protein sequence:

>691_residues
MAVAATFLAVSTTSALAQNDPPRSSPAELAIDAAIPFPEPANVPPPTASDFKLDTTATVSPSQAKAPEPVKPADTAAAPA
ADPAKTVTAPPPAAAPATATTPAPAGEPVKAASSVPAADQPVADRLRDLIATKGTKYFDRKAERAAVEKFYTGRDYAPIW
TQSGNLTAAAKGVIARLKDAAADGLNPADYPVPDFAAAGSAPDALAEADLKLTESMMDYARQAQSGRMHWSQVSADIQYP
EHPIDPNEVLANVTGAKDASAALESYNPPHKLYKLLKAKLAELRGDRDGTPIIIEDGEPLKYTPARGKNAPEAEAQMSDP
RVPKLRAKLGLTENLDDIRYDAKVAAAVRKFQDSVDLKPTGVLDDRTVKALNTPKRDKQIDTVIVNMERWRWLPRELGAP
AIGNAYVILNIPDYTLKVMQHGAQVWTTRVVTGKPGQHATPLLSETMKFITVNPTWNVPPSIIYNEYLPALQQDPTVLDR
MGLRLERARDGSIHISQPPGEANALGRIRFNFPNKFLVYQHDTPDKNLFAKEDRAFSHGCMRVQYPDQYASVLLNLTMPG
ERYTPERIRGMYGSSEIDLKFPTPIPVNITYQTAFVDDAGKLQFRKDVYGRDATMIAILKNSRGKDLENVVAHAQPSYSR
PKGPLPNSVNVSDNSFSSGSSGPNFFERLFGGGQPTPPAPVGRPPRRVFTR

Sequences:

>Translated_691_residues
MAVAATFLAVSTTSALAQNDPPRSSPAELAIDAAIPFPEPANVPPPTASDFKLDTTATVSPSQAKAPEPVKPADTAAAPA
ADPAKTVTAPPPAAAPATATTPAPAGEPVKAASSVPAADQPVADRLRDLIATKGTKYFDRKAERAAVEKFYTGRDYAPIW
TQSGNLTAAAKGVIARLKDAAADGLNPADYPVPDFAAAGSAPDALAEADLKLTESMMDYARQAQSGRMHWSQVSADIQYP
EHPIDPNEVLANVTGAKDASAALESYNPPHKLYKLLKAKLAELRGDRDGTPIIIEDGEPLKYTPARGKNAPEAEAQMSDP
RVPKLRAKLGLTENLDDIRYDAKVAAAVRKFQDSVDLKPTGVLDDRTVKALNTPKRDKQIDTVIVNMERWRWLPRELGAP
AIGNAYVILNIPDYTLKVMQHGAQVWTTRVVTGKPGQHATPLLSETMKFITVNPTWNVPPSIIYNEYLPALQQDPTVLDR
MGLRLERARDGSIHISQPPGEANALGRIRFNFPNKFLVYQHDTPDKNLFAKEDRAFSHGCMRVQYPDQYASVLLNLTMPG
ERYTPERIRGMYGSSEIDLKFPTPIPVNITYQTAFVDDAGKLQFRKDVYGRDATMIAILKNSRGKDLENVVAHAQPSYSR
PKGPLPNSVNVSDNSFSSGSSGPNFFERLFGGGQPTPPAPVGRPPRRVFTR
>Mature_690_residues
AVAATFLAVSTTSALAQNDPPRSSPAELAIDAAIPFPEPANVPPPTASDFKLDTTATVSPSQAKAPEPVKPADTAAAPAA
DPAKTVTAPPPAAAPATATTPAPAGEPVKAASSVPAADQPVADRLRDLIATKGTKYFDRKAERAAVEKFYTGRDYAPIWT
QSGNLTAAAKGVIARLKDAAADGLNPADYPVPDFAAAGSAPDALAEADLKLTESMMDYARQAQSGRMHWSQVSADIQYPE
HPIDPNEVLANVTGAKDASAALESYNPPHKLYKLLKAKLAELRGDRDGTPIIIEDGEPLKYTPARGKNAPEAEAQMSDPR
VPKLRAKLGLTENLDDIRYDAKVAAAVRKFQDSVDLKPTGVLDDRTVKALNTPKRDKQIDTVIVNMERWRWLPRELGAPA
IGNAYVILNIPDYTLKVMQHGAQVWTTRVVTGKPGQHATPLLSETMKFITVNPTWNVPPSIIYNEYLPALQQDPTVLDRM
GLRLERARDGSIHISQPPGEANALGRIRFNFPNKFLVYQHDTPDKNLFAKEDRAFSHGCMRVQYPDQYASVLLNLTMPGE
RYTPERIRGMYGSSEIDLKFPTPIPVNITYQTAFVDDAGKLQFRKDVYGRDATMIAILKNSRGKDLENVVAHAQPSYSRP
KGPLPNSVNVSDNSFSSGSSGPNFFERLFGGGQPTPPAPVGRPPRRVFTR

Specific function: Responsible, at least in part, for generating a meso- diaminopimelyl-3-a meso-diaminopimelyl-3 cross-link [H]

COG id: COG2989

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the YkuD family [H]

Homologues:

Organism=Escherichia coli, GI1787155, Length=294, Percent_Identity=32.9931972789116, Blast_Score=155, Evalue=9e-39,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002477
- InterPro:   IPR005490 [H]

Pfam domain/function: PF01471 PG_binding_1; PF03734 YkuD [H]

EC number: NA

Molecular weight: Translated: 74871; Mature: 74740

Theoretical pI: Translated: 8.87; Mature: 8.87

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.1 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.1 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAVAATFLAVSTTSALAQNDPPRSSPAELAIDAAIPFPEPANVPPPTASDFKLDTTATVS
CCCEEEEHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCEEECCEEECC
PSQAKAPEPVKPADTAAAPAADPAKTVTAPPPAAAPATATTPAPAGEPVKAASSVPAADQ
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCC
PVADRLRDLIATKGTKYFDRKAERAAVEKFYTGRDYAPIWTQSGNLTAAAKGVIARLKDA
HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCEEECCCCEEHHHHHHHHHHHHH
AADGLNPADYPVPDFAAAGSAPDALAEADLKLTESMMDYARQAQSGRMHWSQVSADIQYP
HHCCCCCCCCCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCC
EHPIDPNEVLANVTGAKDASAALESYNPPHKLYKLLKAKLAELRGDRDGTPIIIEDGEPL
CCCCCHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCC
KYTPARGKNAPEAEAQMSDPRVPKLRAKLGLTENLDDIRYDAKVAAAVRKFQDSVDLKPT
EECCCCCCCCCCHHHHCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCC
GVLDDRTVKALNTPKRDKQIDTVIVNMERWRWLPRELGAPAIGNAYVILNIPDYTLKVMQ
CCCCCCHHHHHCCCCCCCCEEEEEEEHHHHCCCHHHHCCCCCCCEEEEEECCHHHHHHHH
HGAQVWTTRVVTGKPGQHATPLLSETMKFITVNPTWNVPPSIIYNEYLPALQQDPTVLDR
CCHHEEEEEEEECCCCCCCCHHHHCCEEEEEECCCCCCCHHHHHHHHHHHHCCCCHHHHH
MGLRLERARDGSIHISQPPGEANALGRIRFNFPNKFLVYQHDTPDKNLFAKEDRAFSHGC
HCCEEEECCCCCEEEECCCCCCCCEEEEEECCCCEEEEEECCCCCCCCCCCCCCHHHCCE
MRVQYPDQYASVLLNLTMPGERYTPERIRGMYGSSEIDLKFPTPIPVNITYQTAFVDDAG
EEEECCHHHHHEEEEEECCCCCCCHHHHHHCCCCCEEEEECCCCCCEEEEEEEEEECCCC
KLQFRKDVYGRDATMIAILKNSRGKDLENVVAHAQPSYSRPKGPLPNSVNVSDNSFSSGS
CEEEHHHHCCCCCEEEEEEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC
SGPNFFERLFGGGQPTPPAPVGRPPRRVFTR
CCHHHHHHHHCCCCCCCCCCCCCCCHHHCCC
>Mature Secondary Structure 
AVAATFLAVSTTSALAQNDPPRSSPAELAIDAAIPFPEPANVPPPTASDFKLDTTATVS
CCEEEEHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCEEECCEEECC
PSQAKAPEPVKPADTAAAPAADPAKTVTAPPPAAAPATATTPAPAGEPVKAASSVPAADQ
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCC
PVADRLRDLIATKGTKYFDRKAERAAVEKFYTGRDYAPIWTQSGNLTAAAKGVIARLKDA
HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCEEECCCCEEHHHHHHHHHHHHH
AADGLNPADYPVPDFAAAGSAPDALAEADLKLTESMMDYARQAQSGRMHWSQVSADIQYP
HHCCCCCCCCCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCC
EHPIDPNEVLANVTGAKDASAALESYNPPHKLYKLLKAKLAELRGDRDGTPIIIEDGEPL
CCCCCHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCC
KYTPARGKNAPEAEAQMSDPRVPKLRAKLGLTENLDDIRYDAKVAAAVRKFQDSVDLKPT
EECCCCCCCCCCHHHHCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCC
GVLDDRTVKALNTPKRDKQIDTVIVNMERWRWLPRELGAPAIGNAYVILNIPDYTLKVMQ
CCCCCCHHHHHCCCCCCCCEEEEEEEHHHHCCCHHHHCCCCCCCEEEEEECCHHHHHHHH
HGAQVWTTRVVTGKPGQHATPLLSETMKFITVNPTWNVPPSIIYNEYLPALQQDPTVLDR
CCHHEEEEEEEECCCCCCCCHHHHCCEEEEEECCCCCCCHHHHHHHHHHHHCCCCHHHHH
MGLRLERARDGSIHISQPPGEANALGRIRFNFPNKFLVYQHDTPDKNLFAKEDRAFSHGC
HCCEEEECCCCCEEEECCCCCCCCEEEEEECCCCEEEEEECCCCCCCCCCCCCCHHHCCE
MRVQYPDQYASVLLNLTMPGERYTPERIRGMYGSSEIDLKFPTPIPVNITYQTAFVDDAG
EEEECCHHHHHEEEEEECCCCCCCHHHHHHCCCCCEEEEECCCCCCEEEEEEEEEECCCC
KLQFRKDVYGRDATMIAILKNSRGKDLENVVAHAQPSYSRPKGPLPNSVNVSDNSFSSGS
CEEEHHHHCCCCCEEEEEEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC
SGPNFFERLFGGGQPTPPAPVGRPPRRVFTR
CCHHHHHHHHCCCCCCCCCCCCCCCHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503; 1989883 [H]