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The map label for this gene is yhjC [C]

Identifier: 146338059

GI number: 146338059

Start: 1013397

End: 1014281

Strand: Direct

Name: yhjC [C]

Synonym: BRADO0954

Alternate gene names: 146338059

Gene position: 1013397-1014281 (Clockwise)

Preceding gene: 146338057

Following gene: 146338061

Centisome position: 13.59

GC content: 67.8

Gene sequence:

>885_bases
ATGGACCGCATCGATGCCATGCAAGCGTTCGTCACCGTTGCCGAGCTGAACGGCTTCGCGCCGGCCGCGCGGCGGTTGAA
GCTGTCGCCATCGGCGATCACGCGCCTGGTCGCCGGGCTCGAAGAGCACCTGGGAGTTCGCCTGCTGCAGCGCACGACGC
GCTCGGTGACGCTGACCGATGCCGGCCGTCGCTATCTCGAACGCGTCAGGCGCATCCTGACCGATCTCGAGGAGGCCGAG
CTCGCTGCCGCAAGCGAGCGCCTGCAGCCGGTCGGGCGACTGGTGGTCTCCGCGCCGGTCGGCTTTGGCCGCCTTCACGT
CGGTCCTGTCATGGCGGCCTATCTCAGCCGATATCCGGAGGTCGCCGGCGAACTGCGGCTGGAAGACCGTCAGATCAATC
TCGTGGACGATGGGGTCGATTGTGCCGTGCGCATCGGCCATCTCCAGGATTCCTCGCTGGTCGCCCGCCAGGTCGGCAGC
ATGCGGCGGATCGTGGTCGGCGCGCCCGCCTACTTCAAGGCGCATGGCGAGCCGCGGGCTCCGGAGGCGGTGGCGAAGCA
CCAGACGATTCAGTTCGGGCCTGCCGACGAATGGCAGTTCGTCAAGGAGGGCAGGGAGCTGCGGATCGCGGTCAGCCCTC
GGCTCGTCACCAACAACGCCGATGCCGCGATCCAATATGCGGAGGCGGGCGGCGGCGTCACCCGGGTGATGGCCTATCAG
GCCGCGGAGATGCTGCGGGCCGGCCGATTGAGGCGGGTGATGACGAAATTCGAGCCGGCGCCGGTCCCGATCCACATCGT
GTTTCCGAGTTCACGCCTGCTCTCCGCCAAGGTGCGCGCCTTCGTCGACCTCGTCACCGAAACCTGCAATTGGCGCTTCG
GCTGA

Upstream 100 bases:

>100_bases
TCCTGCGGCAGTGCCGCTGTCACGCCAATATGGCCTCAACGCCCAACAGAAATAATCAGGCCAGTTGACACTGGATCATT
GCAAATGCTGCAATGATGGA

Downstream 100 bases:

>100_bases
CACCGGCTGCGGGCCACACGTCCGTCATTCCGGGGCAAGGCCGAAGGCCTTGAACCCGGAATGACGGAGGTGTGGCGCGA
CGACGCCAATCCTGACGCGC

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: ORF2 [H]

Number of amino acids: Translated: 294; Mature: 294

Protein sequence:

>294_residues
MDRIDAMQAFVTVAELNGFAPAARRLKLSPSAITRLVAGLEEHLGVRLLQRTTRSVTLTDAGRRYLERVRRILTDLEEAE
LAAASERLQPVGRLVVSAPVGFGRLHVGPVMAAYLSRYPEVAGELRLEDRQINLVDDGVDCAVRIGHLQDSSLVARQVGS
MRRIVVGAPAYFKAHGEPRAPEAVAKHQTIQFGPADEWQFVKEGRELRIAVSPRLVTNNADAAIQYAEAGGGVTRVMAYQ
AAEMLRAGRLRRVMTKFEPAPVPIHIVFPSSRLLSAKVRAFVDLVTETCNWRFG

Sequences:

>Translated_294_residues
MDRIDAMQAFVTVAELNGFAPAARRLKLSPSAITRLVAGLEEHLGVRLLQRTTRSVTLTDAGRRYLERVRRILTDLEEAE
LAAASERLQPVGRLVVSAPVGFGRLHVGPVMAAYLSRYPEVAGELRLEDRQINLVDDGVDCAVRIGHLQDSSLVARQVGS
MRRIVVGAPAYFKAHGEPRAPEAVAKHQTIQFGPADEWQFVKEGRELRIAVSPRLVTNNADAAIQYAEAGGGVTRVMAYQ
AAEMLRAGRLRRVMTKFEPAPVPIHIVFPSSRLLSAKVRAFVDLVTETCNWRFG
>Mature_294_residues
MDRIDAMQAFVTVAELNGFAPAARRLKLSPSAITRLVAGLEEHLGVRLLQRTTRSVTLTDAGRRYLERVRRILTDLEEAE
LAAASERLQPVGRLVVSAPVGFGRLHVGPVMAAYLSRYPEVAGELRLEDRQINLVDDGVDCAVRIGHLQDSSLVARQVGS
MRRIVVGAPAYFKAHGEPRAPEAVAKHQTIQFGPADEWQFVKEGRELRIAVSPRLVTNNADAAIQYAEAGGGVTRVMAYQ
AAEMLRAGRLRRVMTKFEPAPVPIHIVFPSSRLLSAKVRAFVDLVTETCNWRFG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693193, Length=295, Percent_Identity=29.8305084745763, Blast_Score=153, Evalue=1e-38,
Organism=Escherichia coli, GI1789639, Length=290, Percent_Identity=29.3103448275862, Blast_Score=151, Evalue=4e-38,
Organism=Escherichia coli, GI1787128, Length=282, Percent_Identity=31.2056737588652, Blast_Score=149, Evalue=2e-37,
Organism=Escherichia coli, GI1786401, Length=287, Percent_Identity=32.7526132404181, Blast_Score=143, Evalue=1e-35,
Organism=Escherichia coli, GI1787589, Length=288, Percent_Identity=29.8611111111111, Blast_Score=136, Evalue=1e-33,
Organism=Escherichia coli, GI87081978, Length=289, Percent_Identity=31.4878892733564, Blast_Score=131, Evalue=7e-32,
Organism=Escherichia coli, GI1789440, Length=292, Percent_Identity=26.3698630136986, Blast_Score=129, Evalue=2e-31,
Organism=Escherichia coli, GI1789173, Length=250, Percent_Identity=26.4, Blast_Score=81, Evalue=8e-17,
Organism=Escherichia coli, GI1788706, Length=174, Percent_Identity=26.4367816091954, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI145693105, Length=76, Percent_Identity=42.1052631578947, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI157672245, Length=128, Percent_Identity=32.03125, Blast_Score=62, Evalue=5e-11,
Organism=Escherichia coli, GI1788748, Length=58, Percent_Identity=53.448275862069, Blast_Score=61, Evalue=8e-11,
Organism=Escherichia coli, GI1787879, Length=133, Percent_Identity=37.593984962406, Blast_Score=61, Evalue=8e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 32384; Mature: 32384

Theoretical pI: Translated: 10.26; Mature: 10.26

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDRIDAMQAFVTVAELNGFAPAARRLKLSPSAITRLVAGLEEHLGVRLLQRTTRSVTLTD
CCHHHHHHHHHHHHHHCCCCHHHHHEECCHHHHHHHHHHHHHHHHHHHHHHHHCEEEECH
AGRRYLERVRRILTDLEEAELAAASERLQPVGRLVVSAPVGFGRLHVGPVMAAYLSRYPE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHH
VAGELRLEDRQINLVDDGVDCAVRIGHLQDSSLVARQVGSMRRIVVGAPAYFKAHGEPRA
HHHCEEECCCEEEEEECCCCEEEEECCCCCHHHHHHHHCCHHEEEEECCHHEECCCCCCC
PEAVAKHQTIQFGPADEWQFVKEGRELRIAVSPRLVTNNADAAIQYAEAGGGVTRVMAYQ
CHHHHHCCEEECCCCCCHHHHHCCCEEEEEECCEEEECCCCCEEEEECCCCCHHHHHHHH
AAEMLRAGRLRRVMTKFEPAPVPIHIVFPSSRLLSAKVRAFVDLVTETCNWRFG
HHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MDRIDAMQAFVTVAELNGFAPAARRLKLSPSAITRLVAGLEEHLGVRLLQRTTRSVTLTD
CCHHHHHHHHHHHHHHCCCCHHHHHEECCHHHHHHHHHHHHHHHHHHHHHHHHCEEEECH
AGRRYLERVRRILTDLEEAELAAASERLQPVGRLVVSAPVGFGRLHVGPVMAAYLSRYPE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHH
VAGELRLEDRQINLVDDGVDCAVRIGHLQDSSLVARQVGSMRRIVVGAPAYFKAHGEPRA
HHHCEEECCCEEEEEECCCCEEEEECCCCCHHHHHHHHCCHHEEEEECCHHEECCCCCCC
PEAVAKHQTIQFGPADEWQFVKEGRELRIAVSPRLVTNNADAAIQYAEAGGGVTRVMAYQ
CHHHHHCCEEECCCCCCHHHHHCCCEEEEEECCEEEECCCCCEEEEECCCCCHHHHHHHH
AAEMLRAGRLRRVMTKFEPAPVPIHIVFPSSRLLSAKVRAFVDLVTETCNWRFG
HHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8635745; 7542800 [H]