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The map label for this gene is ygaD [C]

Identifier: 146338020

GI number: 146338020

Start: 975129

End: 975611

Strand: Reverse

Name: ygaD [C]

Synonym: BRADO0913

Alternate gene names: 146338020

Gene position: 975611-975129 (Counterclockwise)

Preceding gene: 146338021

Following gene: 146338009

Centisome position: 13.08

GC content: 68.94

Gene sequence:

>483_bases
ATGGATGAACTGATTGTCGTTGCCGAGCAGGTCGCCGCCCGGCTGATCGCGCGCAAGCAGACCATTGCCGTCGCGGAGTC
GTCCGCTGGCGGGCTCATCGCCGCCGCACTGCTTGCGGTGCCCGGCGCGTCGGCCTACTTCCTCGGGGGCGCCGTGGTCT
ATACGCGCGACGCGCGACGCCTGCTGATGGACATTCCGGACGAAGCGATGAAGGGCATCCGCTCCGCGTCGGAGCCCTAT
GCGCAGTTGCTGGCGCGGCAGATCAAGTCGCGCTTCGCCACCGACTGGGGCCTGTCGGAGACCGGCGCCGCCGGCCCCAC
CGGCAACCGTTATGGCGACGCGGCAGGCCACGCCTGCTTCGCCGTCGCCGGCACGGCATCAGCCGTGGTGACGCTGGAAA
GCGGCCGCACCGACCGCTTCGCCAACATGCAGCTATTCGCGAAGAGCGCGCTGGAGCTGCTGCTCAAGCATCTCGACGCA
TGA

Upstream 100 bases:

>100_bases
GAGCCTGCCGCGGCCTGATCGGCTTGTTTGTTGACGCCAAGGGCGGCATCATCCGATGCCGCCCTTTTTGTTTGCGGCCG
GAGCGGGAGCAAGGTCTGTG

Downstream 100 bases:

>100_bases
ACCGCTGTCGTCCCGAACAAGCCCGCTGACGCGCAGCGCCGGCGGGCGCCGATCCGGGACCCAGACCGCGTGATCTCGCT
TGTGGCAGGCTGAGCGTCGA

Product: putative competence-damaged protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 160; Mature: 160

Protein sequence:

>160_residues
MDELIVVAEQVAARLIARKQTIAVAESSAGGLIAAALLAVPGASAYFLGGAVVYTRDARRLLMDIPDEAMKGIRSASEPY
AQLLARQIKSRFATDWGLSETGAAGPTGNRYGDAAGHACFAVAGTASAVVTLESGRTDRFANMQLFAKSALELLLKHLDA

Sequences:

>Translated_160_residues
MDELIVVAEQVAARLIARKQTIAVAESSAGGLIAAALLAVPGASAYFLGGAVVYTRDARRLLMDIPDEAMKGIRSASEPY
AQLLARQIKSRFATDWGLSETGAAGPTGNRYGDAAGHACFAVAGTASAVVTLESGRTDRFANMQLFAKSALELLLKHLDA
>Mature_160_residues
MDELIVVAEQVAARLIARKQTIAVAESSAGGLIAAALLAVPGASAYFLGGAVVYTRDARRLLMDIPDEAMKGIRSASEPY
AQLLARQIKSRFATDWGLSETGAAGPTGNRYGDAAGHACFAVAGTASAVVTLESGRTDRFANMQLFAKSALELLLKHLDA

Specific function: Unknown

COG id: COG1546

COG function: function code R; Uncharacterized protein (competence- and mitomycin-induced)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CinA family [H]

Homologues:

Organism=Escherichia coli, GI1789052, Length=121, Percent_Identity=32.2314049586777, Blast_Score=60, Evalue=6e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008136
- InterPro:   IPR008135
- InterPro:   IPR001453 [H]

Pfam domain/function: PF02464 CinA; PF00994 MoCF_biosynth [H]

EC number: NA

Molecular weight: Translated: 16709; Mature: 16709

Theoretical pI: Translated: 7.52; Mature: 7.52

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDELIVVAEQVAARLIARKQTIAVAESSAGGLIAAALLAVPGASAYFLGGAVVYTRDARR
CCHHHHHHHHHHHHHHHHHHHHHEECCCCCHHHHHHHHHCCCCCHHHHCCEEEEEHHHHH
LLMDIPDEAMKGIRSASEPYAQLLARQIKSRFATDWGLSETGAAGPTGNRYGDAAGHACF
HHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHE
AVAGTASAVVTLESGRTDRFANMQLFAKSALELLLKHLDA
EEECCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MDELIVVAEQVAARLIARKQTIAVAESSAGGLIAAALLAVPGASAYFLGGAVVYTRDARR
CCHHHHHHHHHHHHHHHHHHHHHEECCCCCHHHHHHHHHCCCCCHHHHCCEEEEEHHHHH
LLMDIPDEAMKGIRSASEPYAQLLARQIKSRFATDWGLSETGAAGPTGNRYGDAAGHACF
HHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHE
AVAGTASAVVTLESGRTDRFANMQLFAKSALELLLKHLDA
EEECCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA