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The map label for this gene is ykfC [H]

Identifier: 146302340

GI number: 146302340

Start: 5577728

End: 5578489

Strand: Direct

Name: ykfC [H]

Synonym: Fjoh_4613

Alternate gene names: 146302340

Gene position: 5577728-5578489 (Clockwise)

Preceding gene: 146302339

Following gene: 146302341

Centisome position: 91.49

GC content: 36.48

Gene sequence:

>762_bases
ATGTTTGGAATTTGTAATCTAGCCATAGTACCCGTTCGAGCTGAAGCCAGCGACAGAAGTGAAATTGTTACACAGCTCTT
GTTTGGCGAGCATATCGAAATTTTAGAACGTCATAATCAATGGGCGCGAATCAGAATTCAATATGATGATTACGAAGGCT
GGGTAGATTCTAAGCAATATCAGGTAATTTCAAAAGAGCAGTTCGATTTGTTGAGCAAAGAAGCCATTATTCTAAATGCT
GATTTAATTGACTACATCACTGCACCAAACAATCTATTGCTTCCAATTCCGCTTGGAGCTTCTTTATCTTTTTTAAACAA
TAACGAAATCAATACTTCAAATTTTGATTTTGAAGGAACCAAAACCAGCGGCGTAAAACCTAAAAGTGCATTAATCAAAA
CTGCTTTTATGTATTTGAATGCTCCCTATTTATGGGGCGGAAAAACTCCTTTTGGCATTGATTGTTCAGGCTTTACCCAA
ATGGTTTATAAATTGAATGGCTATAAAATTCATCGTGATGCTTCTCAGCAGGCACTTGAAGGCGAAGCTTTAAGTTTTAT
CGAAGAAAGTGAAGTTGGCGATTTAGCCTTTTTTGATAACGACGAAGGCAATATCATTCATGTCGGCATCATTATGGAAA
ACAATTACATCATTCACGCAAGTGGAAAAGTCCGCATTGACCGCTTGGATCATTTAGGAATTTACAATCCTGAACTAAAA
AAACACACTCACAAACTGCGTGTTATCAAAAAAATCATATAA

Upstream 100 bases:

>100_bases
GGCGCATCGGCAATTGTTATCGAAAGAGCTTAAAACAATATCATAAAAAATCAGGAGTTATATGTATAACTCCTGATTTT
CAACTAATACTTTCCCTTAA

Downstream 100 bases:

>100_bases
GCCTTTTCATTAACTCTAAAGTAATATACCTTGGCAAAGTTTTCATTATCTAAAACAGATTTCAGAATAAACGATACAAT
TGTTCAACTTCCAGCTGCTA

Product: NLP/P60 protein

Products: NA

Alternate protein names: Cell wall endopeptidase ykfC [H]

Number of amino acids: Translated: 253; Mature: 253

Protein sequence:

>253_residues
MFGICNLAIVPVRAEASDRSEIVTQLLFGEHIEILERHNQWARIRIQYDDYEGWVDSKQYQVISKEQFDLLSKEAIILNA
DLIDYITAPNNLLLPIPLGASLSFLNNNEINTSNFDFEGTKTSGVKPKSALIKTAFMYLNAPYLWGGKTPFGIDCSGFTQ
MVYKLNGYKIHRDASQQALEGEALSFIEESEVGDLAFFDNDEGNIIHVGIIMENNYIIHASGKVRIDRLDHLGIYNPELK
KHTHKLRVIKKII

Sequences:

>Translated_253_residues
MFGICNLAIVPVRAEASDRSEIVTQLLFGEHIEILERHNQWARIRIQYDDYEGWVDSKQYQVISKEQFDLLSKEAIILNA
DLIDYITAPNNLLLPIPLGASLSFLNNNEINTSNFDFEGTKTSGVKPKSALIKTAFMYLNAPYLWGGKTPFGIDCSGFTQ
MVYKLNGYKIHRDASQQALEGEALSFIEESEVGDLAFFDNDEGNIIHVGIIMENNYIIHASGKVRIDRLDHLGIYNPELK
KHTHKLRVIKKII
>Mature_253_residues
MFGICNLAIVPVRAEASDRSEIVTQLLFGEHIEILERHNQWARIRIQYDDYEGWVDSKQYQVISKEQFDLLSKEAIILNA
DLIDYITAPNNLLLPIPLGASLSFLNNNEINTSNFDFEGTKTSGVKPKSALIKTAFMYLNAPYLWGGKTPFGIDCSGFTQ
MVYKLNGYKIHRDASQQALEGEALSFIEESEVGDLAFFDNDEGNIIHVGIIMENNYIIHASGKVRIDRLDHLGIYNPELK
KHTHKLRVIKKII

Specific function: Specifically hydrolyzes gamma-D-glutamyl-L-lysine bonds in murein peptides, releasing L-Ala-D-Glu [H]

COG id: COG0791

COG function: function code M; Cell wall-associated hydrolases (invasion-associated proteins)

Gene ontology:

Cell location: Attached To The Membrane By A Lipid Anchor [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nlpC/p60 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000064 [H]

Pfam domain/function: PF00877 NLPC_P60 [H]

EC number: NA

Molecular weight: Translated: 28704; Mature: 28704

Theoretical pI: Translated: 5.59; Mature: 5.59

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFGICNLAIVPVRAEASDRSEIVTQLLFGEHIEILERHNQWARIRIQYDDYEGWVDSKQY
CCEEEEEEEEEEECCCCCHHHHHHHHHHCHHHHHHHCCCCEEEEEEEEECCCCCCCCCCE
QVISKEQFDLLSKEAIILNADLIDYITAPNNLLLPIPLGASLSFLNNNEINTSNFDFEGT
EEECHHHHHHHCCCEEEEECCHHEEEECCCCEEEEECCCCEEEEECCCCCCCCCCCCCCC
KTSGVKPKSALIKTAFMYLNAPYLWGGKTPFGIDCSGFTQMVYKLNGYKIHRDASQQALE
CCCCCCHHHHHHHHHHHHCCCCEEECCCCCCCCCCHHHHHHHEEECCEEEECCCHHHHHC
GEALSFIEESEVGDLAFFDNDEGNIIHVGIIMENNYIIHASGKVRIDRLDHLGIYNPELK
CHHHHHHHHCCCCCEEEEECCCCCEEEEEEEEECCEEEEECCEEEEEEECCCCCCCCHHH
KHTHKLRVIKKII
HHHHHHHHHHHCC
>Mature Secondary Structure
MFGICNLAIVPVRAEASDRSEIVTQLLFGEHIEILERHNQWARIRIQYDDYEGWVDSKQY
CCEEEEEEEEEEECCCCCHHHHHHHHHHCHHHHHHHCCCCEEEEEEEEECCCCCCCCCCE
QVISKEQFDLLSKEAIILNADLIDYITAPNNLLLPIPLGASLSFLNNNEINTSNFDFEGT
EEECHHHHHHHCCCEEEEECCHHEEEECCCCEEEEECCCCEEEEECCCCCCCCCCCCCCC
KTSGVKPKSALIKTAFMYLNAPYLWGGKTPFGIDCSGFTQMVYKLNGYKIHRDASQQALE
CCCCCCHHHHHHHHHHHHCCCCEEECCCCCCCCCCHHHHHHHEEECCEEEECCCHHHHHC
GEALSFIEESEVGDLAFFDNDEGNIIHVGIIMENNYIIHASGKVRIDRLDHLGIYNPELK
CHHHHHHHHCCCCCEEEEECCCCCEEEEEEEEECCEEEEECCEEEEEEECCCCCCCCHHH
KHTHKLRVIKKII
HHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]