| Definition | Flavobacterium johnsoniae UW101 chromosome, complete genome. |
|---|---|
| Accession | NC_009441 |
| Length | 6,096,872 |
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The map label for this gene is uvrA [H]
Identifier: 146302236
GI number: 146302236
Start: 5443808
End: 5446639
Strand: Direct
Name: uvrA [H]
Synonym: Fjoh_4509
Alternate gene names: 146302236
Gene position: 5443808-5446639 (Clockwise)
Preceding gene: 146302235
Following gene: 146302237
Centisome position: 89.29
GC content: 36.58
Gene sequence:
>2832_bases ATGCTAGATAAAGACAACACTATTGAAGTTCTTGGCGCAAGAGTTCATAATCTAAAAAATATCGATATTTCAATTCCGCG TGAAAAACTGGTGGTAATTACCGGTTTATCAGGTTCGGGAAAATCATCTTTGGCATTTGACACTATTTATGCCGAAGGCC AGCGTCGTTATGTTGAAACTTTTTCGGCTTATGCCAGACAATTCCTTGGCGGTTTAGAACGTCCAGATGTTGATAAAATC GACGGACTTTCTCCCGTTATTGCCATAGAACAAAAAACTACCAGTAAAAGTCCGCGTTCAACCGTTGGAACCATTACTGA AATATACGATTTCTTAAGACTTTTATATGCCCGTGGTGCAGACGCTTACAGTTACAACACAGGCGAAAAAATGGTTTCAT ATTCTGATGAACAAATTAAAGATTTGATTATTCAGGATTATAACGGAAAACGAATTAATATACTGGCACCTGTAATTAAG GCCCGTAAAGGTCATTATGCCGAATTATTCCAGCAAATTACAAAACAAGGATTTCTAAAAGTCCGCGTAAATGGAGAAGT TCAGGATTTAACAGCCGGAATGAAACTGGATCGTTATAAAACACACGACATTGAAATTGTTGTAGACAGAATGGTTATTG AAGACAATCCGGATAATCAGAAACGATTAGCAGAAAGTATTAATACCGCAATGCATCACGGTGAAAACGTGTTGATGATT TTAGATCAGGATTCAAATGAAGTTCGTTATTTCAGCCGAAATTTGATGTGTCCAACAACCGGAATTTCGTATCAAAATCC AGAACCGAATTTATTTTCTTTCAACTCGCCAAAAGGCGCGTGTCCGCATTGTAACGGATTAGGAACTGTACACGAAATCA ATGTTAAAAAAATAATTCCAAATCCGAAATTATCGATTAAAAGCGGTGGTTTGGCTCCGCTTGGCGAATACAAATCATCA TGGATTTTCAAACAGTTAGAAACCATTGGTGAGAAATTTGGGTTTAAAATTACAGATCCAATCGAGAAAATTCCGGAAGA AGCCATGACCATGATTCTGCATGGCGGAAAAGATAAATTTACTGTAAGTTCTAAAGATCTTGGTGTTACCCGCGATTATA AAATTGATTTTGAAGGAATTTCAAACTTCATCAAAAATCAATATGATGAAAGCGCAACAACCAGCATAAAGCGCTGGGCG AAAGATTTTATGGACGAAATTCCTTGTCCGGTCTGCGAAGGTTCACGCCTTAAAAAAGAAGCTTTATTTTTTAGAGTAAA TGAAAAAAATATCACTGAATTATGTGATATGGATATTTCAGACTTAACTGCGTGGTTCCATGATTTAAACAGCCACCTAA CTGATAAACAGCTTTTGATTGCCTCTGAAGTTGTTAAAGAAATTAAAGACCGTTTGAACTTTTTAATGAACGTTGGTTTA AACTATCTGGCTTTAAGCCGAAGTTCAAAATCGCTTTCAGGAGGTGAAGCACAGCGTATTCGTCTGGCAACCCAAATTGG TTCACAATTAGTTGGTGTGCTTTATATTTTAGATGAGCCAAGTATTGGTTTACACCAAAGAGACAATGAAAAACTAATTC ATTCACTTGAACAATTACGTGATATTGGAAATTCGGTTATTGTGGTAGAACATGACAAAGACATGATCGAAACCGCAGAT TATGTAATTGATATAGGTCCAAAAGCCGGAAAATACGGAGGAGAAATCATCAGTATTGGAACACCTGCAGAAACTTTAAA ATCAGATACTATTACCGCTCAATATTTGAATGGTAAAATGAAATTAGAGATTCCGAAAGAACGCCGTAAAGGAAATGGAA AATTCTTAAAACTAACCGGAGCAACAGGAAACAACCTTAAAAATGTTTCTATCGAAATACCTTTAGGTCAGTTAATTTGT GTTACGGGAGTTTCAGGAAGCGGAAAATCAACTTTGATCAACGAAACGCTCTACCCTATTTTAAACGCTTATTACTTTAA TGGCGTAAAAAAACCACAGCCTTATAAAAAGATTGAAGGTTTAGAACATATAGATAAAGTTATAGATATTGACCAAAGTC CGATTGGAAGAACACCGCGTTCAAATCCAGCGACTTATACCGAAGTTTTTACAGAAATCAGAAACTTGTTCACGATGACT TCTGAAAGTATGATTCGCGGTTACAAAGCCGGACGTTTCAGTTTTAACGTAAAAGGCGGACGCTGCGAAACCTGCGAAGG TTCTGGAGTTAGAACAATCGAAATGAACTTTTTACCAGACGTTTATGTAGAATGCGAAACGTGTCAGGGAAAACGTTTTA ACAGAGAAACACTTGAAATTCGATACAAAGGAAAATCAATCTCGGATGTTCTGGATATGACGGTTGACGAGGCGGTTCCG TTTTTTGAAAATATTCCGAAGATTTACAGAAAAGTAAAAACAATTCAGGATGTTGGTTTAGGATATATTACACTAGGACA ACAAAGTACAACGCTTTCTGGTGGTGAAGCACAACGTATTAAACTAGCAGGAGAATTGTCTAAAAAAGATACCGGAAATA CGTTTTATATTCTGGACGAACCTACAACCGGATTACACTTTGAAGATATTCGCGTTTTAATGGACGTAATCAATAAATTA GTAGATAAAGGAAATACAATTCTGGTTATTGAGCACAATATGGACGTTATTAAACTTGCGGATTATATTATCGATATTGG ACCTGAAGGCGGAAAAGGAGGCGGACAATTAATTGCCAAAGGAACACCGGAAGAAGTAGCCAAAAATAAAAAAAGCTATA CGGCTAAGTTTTTGAAAAAGGAATTGGAATAA
Upstream 100 bases:
>100_bases CTAAACTAGCGTTAATTTGTTATTAATTGTAACATAAACTTTTGCATTCGAGTACAAAAAGAACAAATCAAAGTGGTAAC TTTGCGTTTTGCTCATTTTT
Downstream 100 bases:
>100_bases CCAAATTTTTATATGGGGTGGATTAAAATCCATCCCAGTAATATATACCGATCCTATGGATCTATTCGCGTGCATCGTAT CTTTTTTTGACGGATTAAAA
Product: excinuclease ABC subunit A
Products: NA
Alternate protein names: UvrA protein; Excinuclease ABC subunit A [H]
Number of amino acids: Translated: 943; Mature: 943
Protein sequence:
>943_residues MLDKDNTIEVLGARVHNLKNIDISIPREKLVVITGLSGSGKSSLAFDTIYAEGQRRYVETFSAYARQFLGGLERPDVDKI DGLSPVIAIEQKTTSKSPRSTVGTITEIYDFLRLLYARGADAYSYNTGEKMVSYSDEQIKDLIIQDYNGKRINILAPVIK ARKGHYAELFQQITKQGFLKVRVNGEVQDLTAGMKLDRYKTHDIEIVVDRMVIEDNPDNQKRLAESINTAMHHGENVLMI LDQDSNEVRYFSRNLMCPTTGISYQNPEPNLFSFNSPKGACPHCNGLGTVHEINVKKIIPNPKLSIKSGGLAPLGEYKSS WIFKQLETIGEKFGFKITDPIEKIPEEAMTMILHGGKDKFTVSSKDLGVTRDYKIDFEGISNFIKNQYDESATTSIKRWA KDFMDEIPCPVCEGSRLKKEALFFRVNEKNITELCDMDISDLTAWFHDLNSHLTDKQLLIASEVVKEIKDRLNFLMNVGL NYLALSRSSKSLSGGEAQRIRLATQIGSQLVGVLYILDEPSIGLHQRDNEKLIHSLEQLRDIGNSVIVVEHDKDMIETAD YVIDIGPKAGKYGGEIISIGTPAETLKSDTITAQYLNGKMKLEIPKERRKGNGKFLKLTGATGNNLKNVSIEIPLGQLIC VTGVSGSGKSTLINETLYPILNAYYFNGVKKPQPYKKIEGLEHIDKVIDIDQSPIGRTPRSNPATYTEVFTEIRNLFTMT SESMIRGYKAGRFSFNVKGGRCETCEGSGVRTIEMNFLPDVYVECETCQGKRFNRETLEIRYKGKSISDVLDMTVDEAVP FFENIPKIYRKVKTIQDVGLGYITLGQQSTTLSGGEAQRIKLAGELSKKDTGNTFYILDEPTTGLHFEDIRVLMDVINKL VDKGNTILVIEHNMDVIKLADYIIDIGPEGGKGGGQLIAKGTPEEVAKNKKSYTAKFLKKELE
Sequences:
>Translated_943_residues MLDKDNTIEVLGARVHNLKNIDISIPREKLVVITGLSGSGKSSLAFDTIYAEGQRRYVETFSAYARQFLGGLERPDVDKI DGLSPVIAIEQKTTSKSPRSTVGTITEIYDFLRLLYARGADAYSYNTGEKMVSYSDEQIKDLIIQDYNGKRINILAPVIK ARKGHYAELFQQITKQGFLKVRVNGEVQDLTAGMKLDRYKTHDIEIVVDRMVIEDNPDNQKRLAESINTAMHHGENVLMI LDQDSNEVRYFSRNLMCPTTGISYQNPEPNLFSFNSPKGACPHCNGLGTVHEINVKKIIPNPKLSIKSGGLAPLGEYKSS WIFKQLETIGEKFGFKITDPIEKIPEEAMTMILHGGKDKFTVSSKDLGVTRDYKIDFEGISNFIKNQYDESATTSIKRWA KDFMDEIPCPVCEGSRLKKEALFFRVNEKNITELCDMDISDLTAWFHDLNSHLTDKQLLIASEVVKEIKDRLNFLMNVGL NYLALSRSSKSLSGGEAQRIRLATQIGSQLVGVLYILDEPSIGLHQRDNEKLIHSLEQLRDIGNSVIVVEHDKDMIETAD YVIDIGPKAGKYGGEIISIGTPAETLKSDTITAQYLNGKMKLEIPKERRKGNGKFLKLTGATGNNLKNVSIEIPLGQLIC VTGVSGSGKSTLINETLYPILNAYYFNGVKKPQPYKKIEGLEHIDKVIDIDQSPIGRTPRSNPATYTEVFTEIRNLFTMT SESMIRGYKAGRFSFNVKGGRCETCEGSGVRTIEMNFLPDVYVECETCQGKRFNRETLEIRYKGKSISDVLDMTVDEAVP FFENIPKIYRKVKTIQDVGLGYITLGQQSTTLSGGEAQRIKLAGELSKKDTGNTFYILDEPTTGLHFEDIRVLMDVINKL VDKGNTILVIEHNMDVIKLADYIIDIGPEGGKGGGQLIAKGTPEEVAKNKKSYTAKFLKKELE >Mature_943_residues MLDKDNTIEVLGARVHNLKNIDISIPREKLVVITGLSGSGKSSLAFDTIYAEGQRRYVETFSAYARQFLGGLERPDVDKI DGLSPVIAIEQKTTSKSPRSTVGTITEIYDFLRLLYARGADAYSYNTGEKMVSYSDEQIKDLIIQDYNGKRINILAPVIK ARKGHYAELFQQITKQGFLKVRVNGEVQDLTAGMKLDRYKTHDIEIVVDRMVIEDNPDNQKRLAESINTAMHHGENVLMI LDQDSNEVRYFSRNLMCPTTGISYQNPEPNLFSFNSPKGACPHCNGLGTVHEINVKKIIPNPKLSIKSGGLAPLGEYKSS WIFKQLETIGEKFGFKITDPIEKIPEEAMTMILHGGKDKFTVSSKDLGVTRDYKIDFEGISNFIKNQYDESATTSIKRWA KDFMDEIPCPVCEGSRLKKEALFFRVNEKNITELCDMDISDLTAWFHDLNSHLTDKQLLIASEVVKEIKDRLNFLMNVGL NYLALSRSSKSLSGGEAQRIRLATQIGSQLVGVLYILDEPSIGLHQRDNEKLIHSLEQLRDIGNSVIVVEHDKDMIETAD YVIDIGPKAGKYGGEIISIGTPAETLKSDTITAQYLNGKMKLEIPKERRKGNGKFLKLTGATGNNLKNVSIEIPLGQLIC VTGVSGSGKSTLINETLYPILNAYYFNGVKKPQPYKKIEGLEHIDKVIDIDQSPIGRTPRSNPATYTEVFTEIRNLFTMT SESMIRGYKAGRFSFNVKGGRCETCEGSGVRTIEMNFLPDVYVECETCQGKRFNRETLEIRYKGKSISDVLDMTVDEAVP FFENIPKIYRKVKTIQDVGLGYITLGQQSTTLSGGEAQRIKLAGELSKKDTGNTFYILDEPTTGLHFEDIRVLMDVINKL VDKGNTILVIEHNMDVIKLADYIIDIGPEGGKGGGQLIAKGTPEEVAKNKKSYTAKFLKKELE
Specific function: The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion h
COG id: COG0178
COG function: function code L; Excinuclease ATPase subunit
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 2 ABC transporter domains [H]
Homologues:
Organism=Escherichia coli, GI2367343, Length=946, Percent_Identity=53.8054968287526, Blast_Score=999, Evalue=0.0,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003439 - InterPro: IPR017871 - InterPro: IPR013815 - InterPro: IPR003593 - InterPro: IPR004602 [H]
Pfam domain/function: PF00005 ABC_tran [H]
EC number: NA
Molecular weight: Translated: 105397; Mature: 105397
Theoretical pI: Translated: 6.95; Mature: 6.95
Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLDKDNTIEVLGARVHNLKNIDISIPREKLVVITGLSGSGKSSLAFDTIYAEGQRRYVET CCCCCCCHHHHHHHHHCCCCCEEECCCCEEEEEECCCCCCCCCEEEEHHHHCCHHHHHHH FSAYARQFLGGLERPDVDKIDGLSPVIAIEQKTTSKSPRSTVGTITEIYDFLRLLYARGA HHHHHHHHHCCCCCCCCCHHCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCC DAYSYNTGEKMVSYSDEQIKDLIIQDYNGKRINILAPVIKARKGHYAELFQQITKQGFLK CCEECCCCHHHHCCCHHHHHHHHHCCCCCCEEEEEHHHHHHCCCCHHHHHHHHHHCCEEE VRVNGEVQDLTAGMKLDRYKTHDIEIVVDRMVIEDNPDNQKRLAESINTAMHHGENVLMI EEECCCHHHHHCCCEECCCCCCCEEEEEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEE LDQDSNEVRYFSRNLMCPTTGISYQNPEPNLFSFNSPKGACPHCNGLGTVHEINVKKIIP EECCCCCEEHHHCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCEEEEEEEEECC NPKLSIKSGGLAPLGEYKSSWIFKQLETIGEKFGFKITDPIEKIPEEAMTMILHGGKDKF CCCEEECCCCCCCCHHHHHHHHHHHHHHHHHHHCCEECCHHHHCCHHHHHHHHCCCCCCE TVSSKDLGVTRDYKIDFEGISNFIKNQYDESATTSIKRWAKDFMDEIPCPVCEGSRLKKE EECCCCCCCCCCEEEEHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCE ALFFRVNEKNITELCDMDISDLTAWFHDLNSHLTDKQLLIASEVVKEIKDRLNFLMNVGL EEEEEECCCCHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCC NYLALSRSSKSLSGGEAQRIRLATQIGSQLVGVLYILDEPSIGLHQRDNEKLIHSLEQLR CEEEEECCCCCCCCCCHHHHHHHHHHHHHHEEEEEEECCCCCCCCCCCCHHHHHHHHHHH DIGNSVIVVEHDKDMIETADYVIDIGPKAGKYGGEIISIGTPAETLKSDTITAQYLNGKM HCCCEEEEEECCCHHHHCCCEEEECCCCCCCCCCEEEECCCCHHHHHCCCEEEEEECCEE KLEIPKERRKGNGKFLKLTGATGNNLKNVSIEIPLGQLICVTGVSGSGKSTLINETLYPI EEECCHHHCCCCCCEEEEECCCCCCCEEEEEEECCCCEEEEECCCCCCCCHHHHHHHHHH LNAYYFNGVKKPQPYKKIEGLEHIDKVIDIDQSPIGRTPRSNPATYTEVFTEIRNLFTMT HHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH SESMIRGYKAGRFSFNVKGGRCETCEGSGVRTIEMNFLPDVYVECETCQGKRFNRETLEI HHHHHCCCCCCEEEEEECCCEECCCCCCCEEEEEECCCCCEEEEEECCCCCCCCCCEEEE RYKGKSISDVLDMTVDEAVPFFENIPKIYRKVKTIQDVGLGYITLGQQSTTLSGGEAQRI EECCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCEEE KLAGELSKKDTGNTFYILDEPTTGLHFEDIRVLMDVINKLVDKGNTILVIEHNMDVIKLA EEEECCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHEEE DYIIDIGPEGGKGGGQLIAKGTPEEVAKNKKSYTAKFLKKELE HHHEEECCCCCCCCCEEEECCCHHHHHCCHHHHHHHHHHHHCC >Mature Secondary Structure MLDKDNTIEVLGARVHNLKNIDISIPREKLVVITGLSGSGKSSLAFDTIYAEGQRRYVET CCCCCCCHHHHHHHHHCCCCCEEECCCCEEEEEECCCCCCCCCEEEEHHHHCCHHHHHHH FSAYARQFLGGLERPDVDKIDGLSPVIAIEQKTTSKSPRSTVGTITEIYDFLRLLYARGA HHHHHHHHHCCCCCCCCCHHCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCC DAYSYNTGEKMVSYSDEQIKDLIIQDYNGKRINILAPVIKARKGHYAELFQQITKQGFLK CCEECCCCHHHHCCCHHHHHHHHHCCCCCCEEEEEHHHHHHCCCCHHHHHHHHHHCCEEE VRVNGEVQDLTAGMKLDRYKTHDIEIVVDRMVIEDNPDNQKRLAESINTAMHHGENVLMI EEECCCHHHHHCCCEECCCCCCCEEEEEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEE LDQDSNEVRYFSRNLMCPTTGISYQNPEPNLFSFNSPKGACPHCNGLGTVHEINVKKIIP EECCCCCEEHHHCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCEEEEEEEEECC NPKLSIKSGGLAPLGEYKSSWIFKQLETIGEKFGFKITDPIEKIPEEAMTMILHGGKDKF CCCEEECCCCCCCCHHHHHHHHHHHHHHHHHHHCCEECCHHHHCCHHHHHHHHCCCCCCE TVSSKDLGVTRDYKIDFEGISNFIKNQYDESATTSIKRWAKDFMDEIPCPVCEGSRLKKE EECCCCCCCCCCEEEEHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCE ALFFRVNEKNITELCDMDISDLTAWFHDLNSHLTDKQLLIASEVVKEIKDRLNFLMNVGL EEEEEECCCCHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCC NYLALSRSSKSLSGGEAQRIRLATQIGSQLVGVLYILDEPSIGLHQRDNEKLIHSLEQLR CEEEEECCCCCCCCCCHHHHHHHHHHHHHHEEEEEEECCCCCCCCCCCCHHHHHHHHHHH DIGNSVIVVEHDKDMIETADYVIDIGPKAGKYGGEIISIGTPAETLKSDTITAQYLNGKM HCCCEEEEEECCCHHHHCCCEEEECCCCCCCCCCEEEECCCCHHHHHCCCEEEEEECCEE KLEIPKERRKGNGKFLKLTGATGNNLKNVSIEIPLGQLICVTGVSGSGKSTLINETLYPI EEECCHHHCCCCCCEEEEECCCCCCCEEEEEEECCCCEEEEECCCCCCCCHHHHHHHHHH LNAYYFNGVKKPQPYKKIEGLEHIDKVIDIDQSPIGRTPRSNPATYTEVFTEIRNLFTMT HHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH SESMIRGYKAGRFSFNVKGGRCETCEGSGVRTIEMNFLPDVYVECETCQGKRFNRETLEI HHHHHCCCCCCEEEEEECCCEECCCCCCCEEEEEECCCCCEEEEEECCCCCCCCCCEEEE RYKGKSISDVLDMTVDEAVPFFENIPKIYRKVKTIQDVGLGYITLGQQSTTLSGGEAQRI EECCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCEEE KLAGELSKKDTGNTFYILDEPTTGLHFEDIRVLMDVINKLVDKGNTILVIEHNMDVIKLA EEEECCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHEEE DYIIDIGPEGGKGGGQLIAKGTPEEVAKNKKSYTAKFLKKELE HHHEEECCCCCCCCCEEEECCCHHHHHCCHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: DNA [C]
Specific reaction: Protein + DNA = Protein-DNA [C]
General reaction: Hydrolase; Acting on ester bonds [C]
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11058132 [H]