| Definition | Flavobacterium johnsoniae UW101 chromosome, complete genome. |
|---|---|
| Accession | NC_009441 |
| Length | 6,096,872 |
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The map label for this gene is 146302235
Identifier: 146302235
GI number: 146302235
Start: 5442752
End: 5443705
Strand: Direct
Name: 146302235
Synonym: Fjoh_4508
Alternate gene names: NA
Gene position: 5442752-5443705 (Clockwise)
Preceding gene: 146302234
Following gene: 146302236
Centisome position: 89.27
GC content: 34.38
Gene sequence:
>954_bases ATGTGGAATATTGACTTAACATACCGAGACGAATTTCAATCAACTTTTGATCGATTGTACCAAAAAAGACAGGAACTGCA AACCAGCAGACCACTGCCTAATATTGCTTTACATAAAATCCGCGAAAGTTTATCTCTCGAATGGACTTACAATTCAAATA GTATTGAAGGAAATACAATGAGCTTACGTGAAACCCAAATGGTTATCCAGGAAGGAATTACCATAAAAGGGAAATCACTT CGAGAGCATTTTGAAACCCATAATCACGACAAAGCAATTGACTATTTATATTCAATTGTTGATGATAATTACAAACTTAG AAGTATTGATATTCTTACTATTCATGGTTTAGTTTTACGTTCCATTGAAGATGATTTTGCTGGCCGCATTAGAAACGGAG GTGTTCGTATTTCAGGAGCGAATTTTATGCCTCCAAATGCTAATAAAGTTTCAGATTATCTAGATGAATTAATTGACTTT ATCAATACAAATCCATTAGGTTTAAATGATATTGAGCTGTCAACAATTTACCATCATAAATTAGTCTGGATTCATCCTTT TTTTGATGGAAACGGCCGTACAGTTCGTTTAAGTATGAATTTATTATTAATGCGTTGTGGTTTTCCTCCGGCTATTATTT TAAAAAACGATAGAAAAAAGTATTACGAAGCATTAAATCAAGCCAATAATGGCAATTACCAAAAACTAACGCTTTTGATG TGTCAGGCACTTGAGCGTACACTCAATATTTATTTAAATGCAATGCCCGGAAGCACTTACGATTATCAGCCTATACAAAA TATCGTAAGCGAGCCAGAATCACCATATGGTCAGGAATATGTTAGTTTATTGGCCAGAACAGGAAAAATAGATGCTTATA AAGAAGGCCGAAACTGGTACACAACCAAAGAAGCCATTGAAGAATATATGGCCACAAGAAAAAGAAAACGCTAG
Upstream 100 bases:
>100_bases CTACAGAATGAAACTGCGTTCTATGACAATAGAATAAGCTTAATATCGGATAAGTTAAAAATTTGCTATAACCGATATTA TGAAGTAAATTTGTAGGATT
Downstream 100 bases:
>100_bases TTCTAAACTAGCGTTAATTTGTTATTAATTGTAACATAAACTTTTGCATTCGAGTACAAAAAGAACAAATCAAAGTGGTA ACTTTGCGTTTTGCTCATTT
Product: filamentation induced by cAMP protein Fic
Products: NA
Alternate protein names: Fic Family Protein; Fic Protein; FIC Domain-Containing Protein; Filamentation Induced By CAMP Protein Fic-Like Protein; Fic Protein Family; Filamentation Induced By Camp Family Protein; Fic Family Protein xin-Antitoxin System; Helix-Turn-Helix Domain-Containing Protein; Fic-Domain-Containing Protein; Fic Protein Involved In; Filamentation Induced By Camp Protein Fic; Fic Family xin-Antitoxin System Toxin Component; Fic/DOC Family Protein; Fis Family Transcriptional Regulator
Number of amino acids: Translated: 317; Mature: 317
Protein sequence:
>317_residues MWNIDLTYRDEFQSTFDRLYQKRQELQTSRPLPNIALHKIRESLSLEWTYNSNSIEGNTMSLRETQMVIQEGITIKGKSL REHFETHNHDKAIDYLYSIVDDNYKLRSIDILTIHGLVLRSIEDDFAGRIRNGGVRISGANFMPPNANKVSDYLDELIDF INTNPLGLNDIELSTIYHHKLVWIHPFFDGNGRTVRLSMNLLLMRCGFPPAIILKNDRKKYYEALNQANNGNYQKLTLLM CQALERTLNIYLNAMPGSTYDYQPIQNIVSEPESPYGQEYVSLLARTGKIDAYKEGRNWYTTKEAIEEYMATRKRKR
Sequences:
>Translated_317_residues MWNIDLTYRDEFQSTFDRLYQKRQELQTSRPLPNIALHKIRESLSLEWTYNSNSIEGNTMSLRETQMVIQEGITIKGKSL REHFETHNHDKAIDYLYSIVDDNYKLRSIDILTIHGLVLRSIEDDFAGRIRNGGVRISGANFMPPNANKVSDYLDELIDF INTNPLGLNDIELSTIYHHKLVWIHPFFDGNGRTVRLSMNLLLMRCGFPPAIILKNDRKKYYEALNQANNGNYQKLTLLM CQALERTLNIYLNAMPGSTYDYQPIQNIVSEPESPYGQEYVSLLARTGKIDAYKEGRNWYTTKEAIEEYMATRKRKR >Mature_317_residues MWNIDLTYRDEFQSTFDRLYQKRQELQTSRPLPNIALHKIRESLSLEWTYNSNSIEGNTMSLRETQMVIQEGITIKGKSL REHFETHNHDKAIDYLYSIVDDNYKLRSIDILTIHGLVLRSIEDDFAGRIRNGGVRISGANFMPPNANKVSDYLDELIDF INTNPLGLNDIELSTIYHHKLVWIHPFFDGNGRTVRLSMNLLLMRCGFPPAIILKNDRKKYYEALNQANNGNYQKLTLLM CQALERTLNIYLNAMPGSTYDYQPIQNIVSEPESPYGQEYVSLLARTGKIDAYKEGRNWYTTKEAIEEYMATRKRKR
Specific function: Unknown
COG id: COG3177
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Homo sapiens, GI42794620, Length=228, Percent_Identity=34.6491228070175, Blast_Score=139, Evalue=3e-33, Organism=Caenorhabditis elegans, GI17544594, Length=227, Percent_Identity=37.0044052863436, Blast_Score=146, Evalue=1e-35, Organism=Drosophila melanogaster, GI24582217, Length=222, Percent_Identity=35.1351351351351, Blast_Score=138, Evalue=4e-33,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 36962; Mature: 36962
Theoretical pI: Translated: 7.70; Mature: 7.70
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MWNIDLTYRDEFQSTFDRLYQKRQELQTSRPLPNIALHKIRESLSLEWTYNSNSIEGNTM CCCCCEEEHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHEEEEEECCCCCCCCEE SLRETQMVIQEGITIKGKSLREHFETHNHDKAIDYLYSIVDDNYKLRSIDILTIHGLVLR HHHHHHHHHHCCCCEECHHHHHHHHHCCCHHHHHHHHHHHCCCEEEEEEEEEEHHHHHHH SIEDDFAGRIRNGGVRISGANFMPPNANKVSDYLDELIDFINTNPLGLNDIELSTIYHHK HHHHHHHHHCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEEE LVWIHPFFDGNGRTVRLSMNLLLMRCGFPPAIILKNDRKKYYEALNQANNGNYQKLTLLM EEEEEEEECCCCCEEEEEEEEHEEECCCCCEEEEECCHHHHHHHHHCCCCCCHHHHHHHH CQALERTLNIYLNAMPGSTYDYQPIQNIVSEPESPYGQEYVSLLARTGKIDAYKEGRNWY HHHHHHHHHEEEECCCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHCCCCCEEECCCCCC TTKEAIEEYMATRKRKR HHHHHHHHHHHHHHCCC >Mature Secondary Structure MWNIDLTYRDEFQSTFDRLYQKRQELQTSRPLPNIALHKIRESLSLEWTYNSNSIEGNTM CCCCCEEEHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHEEEEEECCCCCCCCEE SLRETQMVIQEGITIKGKSLREHFETHNHDKAIDYLYSIVDDNYKLRSIDILTIHGLVLR HHHHHHHHHHCCCCEECHHHHHHHHHCCCHHHHHHHHHHHCCCEEEEEEEEEEHHHHHHH SIEDDFAGRIRNGGVRISGANFMPPNANKVSDYLDELIDFINTNPLGLNDIELSTIYHHK HHHHHHHHHCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEEE LVWIHPFFDGNGRTVRLSMNLLLMRCGFPPAIILKNDRKKYYEALNQANNGNYQKLTLLM EEEEEEEECCCCCEEEEEEEEHEEECCCCCEEEEECCHHHHHHHHHCCCCCCHHHHHHHH CQALERTLNIYLNAMPGSTYDYQPIQNIVSEPESPYGQEYVSLLARTGKIDAYKEGRNWY HHHHHHHHHEEEECCCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHCCCCCEEECCCCCC TTKEAIEEYMATRKRKR HHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA