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The map label for this gene is araC [C]

Identifier: 146302173

GI number: 146302173

Start: 5362732

End: 5363658

Strand: Direct

Name: araC [C]

Synonym: Fjoh_4441

Alternate gene names: 146302173

Gene position: 5362732-5363658 (Clockwise)

Preceding gene: 146302172

Following gene: 146302174

Centisome position: 87.96

GC content: 33.98

Gene sequence:

>927_bases
ATGAGTGAAAAAGACACCGCCACAAGGTCATTATATGATTTGTACATCGAATTAGGTGTATCAGTAGATATGCTTGACCC
AAAAGCCGGCTTCGCTGTAGTTAATTTAAACGATGTCGGTTTTGAGCTGCCTTATAAATCGCCTCCATTTAGGCCCAACT
ATTTTTCGTTCCTATTTGTAAAAAAAGGTTCCGGACAATACACAATTGACAACCAAACTTTCCTGACTGAACCTGGATCT
ATTTATTTTACAAATCCAAGTAATTACAGAACCTTTGAATGGAACACAATTGATGAAATTTATTTAATTTGTTTTGATGA
AACTTTCCTGAAAGAAAATGTACATCAGGATGTTTTTAATGAATTTTCGTTTTTATTGACCGAAACGGTACAGCCCAAAA
TATTGAATGTTGCGTTTTATCAGCAAATTGAACAACTCTATCTTCAAATTCACAAGGAATATTTAAACAATTCCAGATAT
AAGTACAGAATAATAGGCAGCTTGTTTGTTGTGTTATTAATAAAGATAAAGGAATATTTTTGGGAAGATTATAATCCTAT
ATATGAAGGTAATCGCTCCTCACAGATTGTAAAAGATTTTAAGCGTACATTAGAACAGCATTATCGCGATTTAAGCAGCG
GTAAAACTCAGACTGTTTTTAGAGTGCAGGATTATGCCAATACTCAAAATTTGCATCCCAATTATTTAAGCACGGTAATA
AAAAGCAAAACAGGAAAACCTATCGCCACATGGATTGCCGATAAAACAATATCAGAAGCCAAATCTTTACTACAAAATTC
AACAATCTCGATCAAAGAAATTGCTTTCCTGCTTGGTTTTTCAGAAGCGGCTCATTTTAGCAATTACTTTAAAAAACATA
CCAATACCTCTCCTGTCCTATACCGGAAGGAACACATCTCCAACTAA

Upstream 100 bases:

>100_bases
TTTCTCTAACTTAATTTTCTAAATGAAATAAAATGAGTCACATAATTTCTTAAGGCCCAAATTTAGTAGATTTGTATTAA
TCCATTCCAATGAGTCTACA

Downstream 100 bases:

>100_bases
AAAATCAAGCCTGCAAATTTAAATTTGCAGGCTTTTTTTATTAATGCCTCAACCAATTTCAGAAAAACGACAGCTGCAAA
TTCTAAATATTTAAAATTTG

Product: helix-turn-helix domain-containing protein

Products: NA

Alternate protein names: Transcriptional Regulator; AraC Family Transcriptional Regulator; Helix-Turn-Helix Domain-Containing Protein; Transcriptional Regulator Arac Family; AraC-Type Transcription Regulator; AraC/XylS Family Transcriptional Regulator; AraC Family Transcriptional Regulatory Protein; AraC-Family Regulatory Protein; Regulatory Helix-Turn-Helix Protein AraC Family; Bacterial Regulatory Helix-Turn-Helix Protein; Helix-Turn-Helix- Domain Containing Protein AraC Type; Response Regulator Receiver Protein

Number of amino acids: Translated: 308; Mature: 307

Protein sequence:

>308_residues
MSEKDTATRSLYDLYIELGVSVDMLDPKAGFAVVNLNDVGFELPYKSPPFRPNYFSFLFVKKGSGQYTIDNQTFLTEPGS
IYFTNPSNYRTFEWNTIDEIYLICFDETFLKENVHQDVFNEFSFLLTETVQPKILNVAFYQQIEQLYLQIHKEYLNNSRY
KYRIIGSLFVVLLIKIKEYFWEDYNPIYEGNRSSQIVKDFKRTLEQHYRDLSSGKTQTVFRVQDYANTQNLHPNYLSTVI
KSKTGKPIATWIADKTISEAKSLLQNSTISIKEIAFLLGFSEAAHFSNYFKKHTNTSPVLYRKEHISN

Sequences:

>Translated_308_residues
MSEKDTATRSLYDLYIELGVSVDMLDPKAGFAVVNLNDVGFELPYKSPPFRPNYFSFLFVKKGSGQYTIDNQTFLTEPGS
IYFTNPSNYRTFEWNTIDEIYLICFDETFLKENVHQDVFNEFSFLLTETVQPKILNVAFYQQIEQLYLQIHKEYLNNSRY
KYRIIGSLFVVLLIKIKEYFWEDYNPIYEGNRSSQIVKDFKRTLEQHYRDLSSGKTQTVFRVQDYANTQNLHPNYLSTVI
KSKTGKPIATWIADKTISEAKSLLQNSTISIKEIAFLLGFSEAAHFSNYFKKHTNTSPVLYRKEHISN
>Mature_307_residues
SEKDTATRSLYDLYIELGVSVDMLDPKAGFAVVNLNDVGFELPYKSPPFRPNYFSFLFVKKGSGQYTIDNQTFLTEPGSI
YFTNPSNYRTFEWNTIDEIYLICFDETFLKENVHQDVFNEFSFLLTETVQPKILNVAFYQQIEQLYLQIHKEYLNNSRYK
YRIIGSLFVVLLIKIKEYFWEDYNPIYEGNRSSQIVKDFKRTLEQHYRDLSSGKTQTVFRVQDYANTQNLHPNYLSTVIK
SKTGKPIATWIADKTISEAKSLLQNSTISIKEIAFLLGFSEAAHFSNYFKKHTNTSPVLYRKEHISN

Specific function: This Protein Controls The Expression Of At Least Six Genes That Are Involved In The Transport And Catabolism Of L-Arabinose. It Regulates Initiation Of Transcription Of The Arabad Operon And It Also Controls Its Own Synthesis. The L- Arabinose Operon Dis

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 36040; Mature: 35909

Theoretical pI: Translated: 7.23; Mature: 7.23

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
1.0 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
0.3 %Met     (Mature Protein)
0.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSEKDTATRSLYDLYIELGVSVDMLDPKAGFAVVNLNDVGFELPYKSPPFRPNYFSFLFV
CCCCHHHHHHHHHHHHHHCCEEEEECCCCCEEEEEECCCCEECCCCCCCCCCCCEEEEEE
KKGSGQYTIDNQTFLTEPGSIYFTNPSNYRTFEWNTIDEIYLICFDETFLKENVHQDVFN
ECCCCCEEECCCEEEECCCEEEEECCCCCEEEECCCCCEEEEEEECHHHHHHHHHHHHHH
EFSFLLTETVQPKILNVAFYQQIEQLYLQIHKEYLNNSRYKYRIIGSLFVVLLIKIKEYF
HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHH
WEDYNPIYEGNRSSQIVKDFKRTLEQHYRDLSSGKTQTVFRVQDYANTQNLHPNYLSTVI
HCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCHHHHHHHH
KSKTGKPIATWIADKTISEAKSLLQNSTISIKEIAFLLGFSEAAHFSNYFKKHTNTSPVL
HCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHHHHHCCCCCCEE
YRKEHISN
EEHHHCCC
>Mature Secondary Structure 
SEKDTATRSLYDLYIELGVSVDMLDPKAGFAVVNLNDVGFELPYKSPPFRPNYFSFLFV
CCCHHHHHHHHHHHHHHCCEEEEECCCCCEEEEEECCCCEECCCCCCCCCCCCEEEEEE
KKGSGQYTIDNQTFLTEPGSIYFTNPSNYRTFEWNTIDEIYLICFDETFLKENVHQDVFN
ECCCCCEEECCCEEEECCCEEEEECCCCCEEEECCCCCEEEEEEECHHHHHHHHHHHHHH
EFSFLLTETVQPKILNVAFYQQIEQLYLQIHKEYLNNSRYKYRIIGSLFVVLLIKIKEYF
HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHH
WEDYNPIYEGNRSSQIVKDFKRTLEQHYRDLSSGKTQTVFRVQDYANTQNLHPNYLSTVI
HCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCHHHHHHHH
KSKTGKPIATWIADKTISEAKSLLQNSTISIKEIAFLLGFSEAAHFSNYFKKHTNTSPVL
HCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHHHHHCCCCCCEE
YRKEHISN
EEHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA