| Definition | Flavobacterium johnsoniae UW101 chromosome, complete genome. |
|---|---|
| Accession | NC_009441 |
| Length | 6,096,872 |
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The map label for this gene is 146302011
Identifier: 146302011
GI number: 146302011
Start: 5165001
End: 5166368
Strand: Direct
Name: 146302011
Synonym: Fjoh_4275
Alternate gene names: NA
Gene position: 5165001-5166368 (Clockwise)
Preceding gene: 146302010
Following gene: 146302012
Centisome position: 84.72
GC content: 34.65
Gene sequence:
>1368_bases ATGAAAAACACATTCTTCTTATTGTTGCTTTTGGGAATCTTTTTTTATGCAAACGCACAACAAAAACCAGTTTTCCAAAA GCTGCGATATGAGGATGATTTCACTTATCTAAAAGCTGATTCGACGAAAACTCCATACGAGAAAATCAAATATATTCCGT TAGGAAAAAACGATAAATATTATGCTTCAATTGGCGGAGAAGCAAGACTGCAGTATACTTACACCGTTAACAATAAATGG GGAGACGAATCTGACGATGATGGGTATTTACTTTCTCGTTATCTGCTTCATGCAAATGTTCAACTGGGCGTTTTTAGAAC ATTTTTTCAATTGCAAAGCAGTTTAGCAAACGGCAAAACAGATCCAAGTCCGGTTGATGAAAATCAGTTAGATATACATC AGGCTTTTTTGGATATAGATTTTATCCGAAAAGAAAATGAACAGTTAACCCTGCGTTTCGGAAGACAAGAAATGTCATAC GGTTCCCAGCGTTTGGTTGCTGTACGAGAAGGTCCAAACAGCCGGCTTGCTTTTGACGGATTGAAACTATTTTATAAAAA AAACAATTGGCAGTCAGATGCTTTTTTTACACATCCTATTGCCAATAAACAAGGAACTTTTAATGATAGTTTTAATGAAA ATGCCAAATTTTGGGGAAGTTATACGGTAATTCATAAAGTGCCGTTTATTCAAAACATCGATTTATATTATTTGGGTTTA TGGAAAAGCCGAGCTGTTTTTGATGATGCCGTTGGTGCAGAAAACAGACAATCGATTGGAACACGAATCTGGAAAAACAA AGGAAACTGGAAATACGATTTTGAAGGTGTTTACCAGTTCGGGAACATCAATCAAAGGACAATTTCAGCCTGGACCATTT CTTCTTTTGCTTGTTATACTTTCGAAAACATAAAATACACTCCGGAAATTGGATTAAAAACAGAAATCATTTCAGGAGAT AAAAATTCTGGCGATGGCTATTTACAAACTTTCAATCCGTTATATCCAAGAGGCGCTTATTTTGGATTAGTTGCCCTTAT AGGTCCATCAAATTTAGTTGACGTTCATCCTTCAATTAATTTTAGTTTATCTGAAAAATGGGGACTCGGAATTGATTATG ATATTTTCTGGAGACAAACCATAAGTGATGGTATATACGCACCAAACATGCAGCTTTTATATTCAGGAAAAGATACAACG GAACGTTTTATAGGTTCACAGTTAATATCAAATGTAAACTACGATATGAATAATCATTTAGGTTTTACATTAGAAACTGG CTGGTTTAATGCAGGTTCATTTTTAAAAGAAGTCGGTTCAGGAAAAGATTATTTTTATGCAGCATTGACGGCACAATTTA AATTTTAA
Upstream 100 bases:
>100_bases TGATAATGACTTTAGAACTTTTGTAAACGAAAAACCAAAAGCAATTCCAGACTGGAGTCCGGTAAATTACTTTGGAGGTT ATCAAAAAAATTAATTCAAA
Downstream 100 bases:
>100_bases TAAAGAACCGTAGGTTCGGTACATCTTGTAGGGATGGATTTTAATCCGTCCAATTAGGAAAAGATTATTTTTATGCAGCA TTGACGGCACAATTTAAATT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 455; Mature: 455
Protein sequence:
>455_residues MKNTFFLLLLLGIFFYANAQQKPVFQKLRYEDDFTYLKADSTKTPYEKIKYIPLGKNDKYYASIGGEARLQYTYTVNNKW GDESDDDGYLLSRYLLHANVQLGVFRTFFQLQSSLANGKTDPSPVDENQLDIHQAFLDIDFIRKENEQLTLRFGRQEMSY GSQRLVAVREGPNSRLAFDGLKLFYKKNNWQSDAFFTHPIANKQGTFNDSFNENAKFWGSYTVIHKVPFIQNIDLYYLGL WKSRAVFDDAVGAENRQSIGTRIWKNKGNWKYDFEGVYQFGNINQRTISAWTISSFACYTFENIKYTPEIGLKTEIISGD KNSGDGYLQTFNPLYPRGAYFGLVALIGPSNLVDVHPSINFSLSEKWGLGIDYDIFWRQTISDGIYAPNMQLLYSGKDTT ERFIGSQLISNVNYDMNNHLGFTLETGWFNAGSFLKEVGSGKDYFYAALTAQFKF
Sequences:
>Translated_455_residues MKNTFFLLLLLGIFFYANAQQKPVFQKLRYEDDFTYLKADSTKTPYEKIKYIPLGKNDKYYASIGGEARLQYTYTVNNKW GDESDDDGYLLSRYLLHANVQLGVFRTFFQLQSSLANGKTDPSPVDENQLDIHQAFLDIDFIRKENEQLTLRFGRQEMSY GSQRLVAVREGPNSRLAFDGLKLFYKKNNWQSDAFFTHPIANKQGTFNDSFNENAKFWGSYTVIHKVPFIQNIDLYYLGL WKSRAVFDDAVGAENRQSIGTRIWKNKGNWKYDFEGVYQFGNINQRTISAWTISSFACYTFENIKYTPEIGLKTEIISGD KNSGDGYLQTFNPLYPRGAYFGLVALIGPSNLVDVHPSINFSLSEKWGLGIDYDIFWRQTISDGIYAPNMQLLYSGKDTT ERFIGSQLISNVNYDMNNHLGFTLETGWFNAGSFLKEVGSGKDYFYAALTAQFKF >Mature_455_residues MKNTFFLLLLLGIFFYANAQQKPVFQKLRYEDDFTYLKADSTKTPYEKIKYIPLGKNDKYYASIGGEARLQYTYTVNNKW GDESDDDGYLLSRYLLHANVQLGVFRTFFQLQSSLANGKTDPSPVDENQLDIHQAFLDIDFIRKENEQLTLRFGRQEMSY GSQRLVAVREGPNSRLAFDGLKLFYKKNNWQSDAFFTHPIANKQGTFNDSFNENAKFWGSYTVIHKVPFIQNIDLYYLGL WKSRAVFDDAVGAENRQSIGTRIWKNKGNWKYDFEGVYQFGNINQRTISAWTISSFACYTFENIKYTPEIGLKTEIISGD KNSGDGYLQTFNPLYPRGAYFGLVALIGPSNLVDVHPSINFSLSEKWGLGIDYDIFWRQTISDGIYAPNMQLLYSGKDTT ERFIGSQLISNVNYDMNNHLGFTLETGWFNAGSFLKEVGSGKDYFYAALTAQFKF
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 52359; Mature: 52359
Theoretical pI: Translated: 7.16; Mature: 7.16
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 0.9 %Met (Translated Protein) 1.1 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 1.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKNTFFLLLLLGIFFYANAQQKPVFQKLRYEDDFTYLKADSTKTPYEKIKYIPLGKNDKY CCCHHHHHHHHHHHHHCCCCCCHHHHHHCCCCCCEEEEECCCCCCHHHEEEEECCCCCCE YASIGGEARLQYTYTVNNKWGDESDDDGYLLSRYLLHANVQLGVFRTFFQLQSSLANGKT EEEECCCEEEEEEEEECCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCC DPSPVDENQLDIHQAFLDIDFIRKENEQLTLRFGRQEMSYGSQRLVAVREGPNSRLAFDG CCCCCCCCHHHHHHHHHHHHHEECCCCEEEEEECCHHHCCCCEEEEEEECCCCCCEEECC LKLFYKKNNWQSDAFFTHPIANKQGTFNDSFNENAKFWGSYTVIHKVPFIQNIDLYYLGL EEEEEECCCCCCCCEEECCCCCCCCCCCCCCCCCCEEEEEEEEEEECCCEECCCEEEEEE WKSRAVFDDAVGAENRQSIGTRIWKNKGNWKYDFEGVYQFGNINQRTISAWTISSFACYT ECCCCHHHHHCCCCCHHHHHHHHCCCCCCEEEEECEEEEECCCCCEEEEEEEECCEEEEE FENIKYTPEIGLKTEIISGDKNSGDGYLQTFNPLYPRGAYFGLVALIGPSNLVDVHPSIN EECEEECCCCCCEEEEECCCCCCCCCEEEECCCCCCCCHHEEEEEEECCCCEEEECCCCC FSLSEKWGLGIDYDIFWRQTISDGIYAPNMQLLYSGKDTTERFIGSQLISNVNYDMNNHL EEECCCCCCCCCEEEEEHHHHCCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCCCCCE GFTLETGWFNAGSFLKEVGSGKDYFYAALTAQFKF EEEEECCCCCHHHHHHHHCCCCCEEEEEEEEEECC >Mature Secondary Structure MKNTFFLLLLLGIFFYANAQQKPVFQKLRYEDDFTYLKADSTKTPYEKIKYIPLGKNDKY CCCHHHHHHHHHHHHHCCCCCCHHHHHHCCCCCCEEEEECCCCCCHHHEEEEECCCCCCE YASIGGEARLQYTYTVNNKWGDESDDDGYLLSRYLLHANVQLGVFRTFFQLQSSLANGKT EEEECCCEEEEEEEEECCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCC DPSPVDENQLDIHQAFLDIDFIRKENEQLTLRFGRQEMSYGSQRLVAVREGPNSRLAFDG CCCCCCCCHHHHHHHHHHHHHEECCCCEEEEEECCHHHCCCCEEEEEEECCCCCCEEECC LKLFYKKNNWQSDAFFTHPIANKQGTFNDSFNENAKFWGSYTVIHKVPFIQNIDLYYLGL EEEEEECCCCCCCCEEECCCCCCCCCCCCCCCCCCEEEEEEEEEEECCCEECCCEEEEEE WKSRAVFDDAVGAENRQSIGTRIWKNKGNWKYDFEGVYQFGNINQRTISAWTISSFACYT ECCCCHHHHHCCCCCHHHHHHHHCCCCCCEEEEECEEEEECCCCCEEEEEEEECCEEEEE FENIKYTPEIGLKTEIISGDKNSGDGYLQTFNPLYPRGAYFGLVALIGPSNLVDVHPSIN EECEEECCCCCCEEEEECCCCCCCCCEEEECCCCCCCCHHEEEEEEECCCCEEEECCCCC FSLSEKWGLGIDYDIFWRQTISDGIYAPNMQLLYSGKDTTERFIGSQLISNVNYDMNNHL EEECCCCCCCCCEEEEEHHHHCCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCCCCCE GFTLETGWFNAGSFLKEVGSGKDYFYAALTAQFKF EEEEECCCCCHHHHHHHHCCCCCEEEEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA