Click here to switch to the map view.

The map label for this gene is xynB [H]

Identifier: 146302002

GI number: 146302002

Start: 5153334

End: 5154263

Strand: Direct

Name: xynB [H]

Synonym: Fjoh_4266

Alternate gene names: 146302002

Gene position: 5153334-5154263 (Clockwise)

Preceding gene: 146301993

Following gene: 146302006

Centisome position: 84.52

GC content: 35.7

Gene sequence:

>930_bases
TTGAAAAACACAAAAACCCTTTATTTACTCACTGTCCTGCTTTTTTCAGGAATTGTATTACATTCAAGTGCTCAAAATCA
GGTTATCCCGCTTTGGAATAAAATACCTGATGAAATCAAATCAGCCGACTATAAAGAAAAAGAAGTCATCACAGATGGAA
AAGTACAAAGTACCAGTTTAGTTACAATACCTACTTTAACTGCATTTTTTCCTGCTGTAACAAAGCCAAATCAAACTGCT
GTAATTATTCTGCCGGGCGGAGGTTACCAGCATTTAGCCATTGATAAAGAGGGAACAAAAGTCGCGCAATGGTTTAACAG
CTTGGGAATTCCGGCTTTTGTGCTTAAGTATAGACTTCCGAGTGATTTAATTATGAAGAATAAAAATGTTGGGCCGTTAC
AGGATGCACAAGAAGCTGTGCGTTATGTAAGGCAAAATGCAGGAAAATGGAATATTGATCCTAATAAAATTGGAATATTA
GGTTTTTCTGCCGGCGGACATTTAGCATCTACTGCTTCAACACATTATGATGATAAAGTTTATGAGTCTGCATATAAAGT
AAGTGCGCGTCCTGATTTTTCTCTTTTAATATATCCGGTGATTTCAATGGAGAACGAAACAACGCATAAAGGTTCTCAGA
CTAATTTATTAGGAAATAATCCGTCTCAGGATTTAATTAATTCATTTTCAAACGAAAAGAAAGTTACAGCGCAGACCCCG
CCTGCTTTTTTAATTCACGCTACAGATGATACTGTTGTGATACCGGAAAATAGTATAAATTATTATTTAGCACTCAAAAA
AAATGGTGTTACAGCGGAGTTACATTTATATGAAAAAGGAGGCCATGGTTTTGGATTAGGCGTAAAAGATACAAGCAAAT
TCTGGACTAGAGACTGTGAAGAATGGCTTAAAGCAAATGGTTATAATTAA

Upstream 100 bases:

>100_bases
CAAGATAGTTTTGAAAGAGTTTTATCCTATATTGTCACTTTTAAAACAAAAGCTGCAAACAAGCAATAAATCATTGTAAA
ACAACTAATTAAACTTAAAA

Downstream 100 bases:

>100_bases
AAAACAGAAAAGGCAAAACGTAATACGTTTTGCCTTTTTATTTAAAAAAAACAAAAAAAGAAATTAAAAACCAATTTTAA
TTTTTCCTAAGCAGTCACTT

Product: esterase/lipase-like protein

Products: NA

Alternate protein names: Xylanase B; 1,4-beta-D-xylan xylanohydrolase B [H]

Number of amino acids: Translated: 309; Mature: 309

Protein sequence:

>309_residues
MKNTKTLYLLTVLLFSGIVLHSSAQNQVIPLWNKIPDEIKSADYKEKEVITDGKVQSTSLVTIPTLTAFFPAVTKPNQTA
VIILPGGGYQHLAIDKEGTKVAQWFNSLGIPAFVLKYRLPSDLIMKNKNVGPLQDAQEAVRYVRQNAGKWNIDPNKIGIL
GFSAGGHLASTASTHYDDKVYESAYKVSARPDFSLLIYPVISMENETTHKGSQTNLLGNNPSQDLINSFSNEKKVTAQTP
PAFLIHATDDTVVIPENSINYYLALKKNGVTAELHLYEKGGHGFGLGVKDTSKFWTRDCEEWLKANGYN

Sequences:

>Translated_309_residues
MKNTKTLYLLTVLLFSGIVLHSSAQNQVIPLWNKIPDEIKSADYKEKEVITDGKVQSTSLVTIPTLTAFFPAVTKPNQTA
VIILPGGGYQHLAIDKEGTKVAQWFNSLGIPAFVLKYRLPSDLIMKNKNVGPLQDAQEAVRYVRQNAGKWNIDPNKIGIL
GFSAGGHLASTASTHYDDKVYESAYKVSARPDFSLLIYPVISMENETTHKGSQTNLLGNNPSQDLINSFSNEKKVTAQTP
PAFLIHATDDTVVIPENSINYYLALKKNGVTAELHLYEKGGHGFGLGVKDTSKFWTRDCEEWLKANGYN
>Mature_309_residues
MKNTKTLYLLTVLLFSGIVLHSSAQNQVIPLWNKIPDEIKSADYKEKEVITDGKVQSTSLVTIPTLTAFFPAVTKPNQTA
VIILPGGGYQHLAIDKEGTKVAQWFNSLGIPAFVLKYRLPSDLIMKNKNVGPLQDAQEAVRYVRQNAGKWNIDPNKIGIL
GFSAGGHLASTASTHYDDKVYESAYKVSARPDFSLLIYPVISMENETTHKGSQTNLLGNNPSQDLINSFSNEKKVTAQTP
PAFLIHATDDTVVIPENSINYYLALKKNGVTAELHLYEKGGHGFGLGVKDTSKFWTRDCEEWLKANGYN

Specific function: B.fibrisolvens is located in the rumen of ruminant animals, where it contributes to the animal's digestion of plant material by hydrolyzing hemicellulose with its xylanases [H]

COG id: COG0657

COG function: function code I; Esterase/lipase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyl hydrolase 10 (cellulase F) family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013094
- InterPro:   IPR001000
- InterPro:   IPR017853
- InterPro:   IPR013781 [H]

Pfam domain/function: PF07859 Abhydrolase_3; PF00331 Glyco_hydro_10 [H]

EC number: =3.2.1.8 [H]

Molecular weight: Translated: 34131; Mature: 34131

Theoretical pI: Translated: 8.76; Mature: 8.76

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKNTKTLYLLTVLLFSGIVLHSSAQNQVIPLWNKIPDEIKSADYKEKEVITDGKVQSTSL
CCCCHHHHHHHHHHHCCEEEECCCCCCEEEHHHCCCHHHHCCCCCCHHCCCCCCCCCCEE
VTIPTLTAFFPAVTKPNQTAVIILPGGGYQHLAIDKEGTKVAQWFNSLGIPAFVLKYRLP
EEECHHHHHHHCCCCCCCEEEEEECCCCEEEEEECCCCHHHHHHHHHCCCCEEEEEECCC
SDLIMKNKNVGPLQDAQEAVRYVRQNAGKWNIDPNKIGILGFSAGGHLASTASTHYDDKV
HHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCHHH
YESAYKVSARPDFSLLIYPVISMENETTHKGSQTNLLGNNPSQDLINSFSNEKKVTAQTP
HHHHHEECCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCEEEECCC
PAFLIHATDDTVVIPENSINYYLALKKNGVTAELHLYEKGGHGFGLGVKDTSKFWTRDCE
CEEEEEECCCEEEEECCCCEEEEEEECCCCEEEEEEEECCCCEEECCCCCCHHHHHHHHH
EWLKANGYN
HHHHCCCCC
>Mature Secondary Structure
MKNTKTLYLLTVLLFSGIVLHSSAQNQVIPLWNKIPDEIKSADYKEKEVITDGKVQSTSL
CCCCHHHHHHHHHHHCCEEEECCCCCCEEEHHHCCCHHHHCCCCCCHHCCCCCCCCCCEE
VTIPTLTAFFPAVTKPNQTAVIILPGGGYQHLAIDKEGTKVAQWFNSLGIPAFVLKYRLP
EEECHHHHHHHCCCCCCCEEEEEECCCCEEEEEECCCCHHHHHHHHHCCCCEEEEEECCC
SDLIMKNKNVGPLQDAQEAVRYVRQNAGKWNIDPNKIGILGFSAGGHLASTASTHYDDKV
HHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCHHH
YESAYKVSARPDFSLLIYPVISMENETTHKGSQTNLLGNNPSQDLINSFSNEKKVTAQTP
HHHHHEECCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCEEEECCC
PAFLIHATDDTVVIPENSINYYLALKKNGVTAELHLYEKGGHGFGLGVKDTSKFWTRDCE
CEEEEEECCCEEEEECCCCEEEEEEECCCCEEEEEEEECCCCEEECCCCCCHHHHHHHHH
EWLKANGYN
HHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1909424 [H]