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The map label for this gene is pchR [H]

Identifier: 146302006

GI number: 146302006

Start: 5159634

End: 5160665

Strand: Direct

Name: pchR [H]

Synonym: Fjoh_4270

Alternate gene names: 146302006

Gene position: 5159634-5160665 (Clockwise)

Preceding gene: 146302002

Following gene: 146302007

Centisome position: 84.63

GC content: 30.91

Gene sequence:

>1032_bases
TTGAAGATCAAATCGCAACTATCAGCCCATGAAAAACCAATTATTAATATTGAAATTAAAGACCATTACGATCCAAAAAG
TATTCTTACAGAGGAAATTATCGACATAAAAAAGGAAGAAACAGATGAAATAAAAAGTCACATATTATCTACCGACGGAA
TGGTTCTTATTGATACTCAAATATGTCTCTCTAAGTCGCAGACTGATGTTTTTGAGATTAACGAAGAATGTGTTGTAATG
GATTTTGTAAACTCCGGCAACATCGAAACCAATATCGAACTGCCTGAGTCAGACAAGCGCATTAAAGAAAGTACGCACAA
TATTTTTTACACCACAAAATTTAAAGCTACTTATACTATACCCGCATTTGAAAAAGTCAATTATTTAGCTATAATTTTTT
CCAAAGAATTTTATTATAACATAATCAATGAGGATTGGAAAGTTCATGAAAAATTTTCTAAAAACATTCATTTAAAAAAA
TCAAGCTATCTCACAAATAAATACATTCCATTTACTCCTTCAATACAATGGATAATTTCTGAAATTAGAAACTGCAACCG
AAAAGGTGCTCTGAAAAAAATGTTTCTCGAAACCAAAATCAGAGAACTTTTAATACATCAGCTCGAAGCCATTATTACAC
AACCCGGACAAAAAAACAAAATTGACGATGAGGATTACTCTAAACTTCTGGAAGCAAAACTAATTCTGGAAAAAGATTAT
GTTCACGCTCCAAATCTAACTGAACTTTCGAGAATGATTTCGCTGAATGAATTTAAATTAAAGAAAGGTTTTAAAGCCTG
TTTTGGAACAACCGTTAAAAGTTTTATTATTAAACTACGAATGGAATATGCTAAAGAATTATTTAAGGATAAAGCCTCAA
CAGTAAGTGAAGTAGCCTATAAATGCGGTTACAAAGATATTTCTCATTTCTCGGCTGCATTTAAAAGTTTCTACGGCTCC
TCTCCTCAAAAATTTAAAAGCAATTGGGACTATATTTATTTTTGGATTACCGGAATTCTGATATTTAGTTAA

Upstream 100 bases:

>100_bases
ATTAGACTAATTATAAATAACTTTGACGCAAAAGTACTCTTAACAGCTTCAAAAAAGTTAGGGAAAAACGGATTATTATT
TTGTAAAAACGGATTATATT

Downstream 100 bases:

>100_bases
TAAAAAAGGATTTTAGATTAAGGCTGAATAATCAGCCAAATCTAAAACCCTAAAAAAATTAGACAGTATTTGTATAACAA
TTTTCTACAAGTTACCCACG

Product: helix-turn-helix domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 343; Mature: 343

Protein sequence:

>343_residues
MKIKSQLSAHEKPIINIEIKDHYDPKSILTEEIIDIKKEETDEIKSHILSTDGMVLIDTQICLSKSQTDVFEINEECVVM
DFVNSGNIETNIELPESDKRIKESTHNIFYTTKFKATYTIPAFEKVNYLAIIFSKEFYYNIINEDWKVHEKFSKNIHLKK
SSYLTNKYIPFTPSIQWIISEIRNCNRKGALKKMFLETKIRELLIHQLEAIITQPGQKNKIDDEDYSKLLEAKLILEKDY
VHAPNLTELSRMISLNEFKLKKGFKACFGTTVKSFIIKLRMEYAKELFKDKASTVSEVAYKCGYKDISHFSAAFKSFYGS
SPQKFKSNWDYIYFWITGILIFS

Sequences:

>Translated_343_residues
MKIKSQLSAHEKPIINIEIKDHYDPKSILTEEIIDIKKEETDEIKSHILSTDGMVLIDTQICLSKSQTDVFEINEECVVM
DFVNSGNIETNIELPESDKRIKESTHNIFYTTKFKATYTIPAFEKVNYLAIIFSKEFYYNIINEDWKVHEKFSKNIHLKK
SSYLTNKYIPFTPSIQWIISEIRNCNRKGALKKMFLETKIRELLIHQLEAIITQPGQKNKIDDEDYSKLLEAKLILEKDY
VHAPNLTELSRMISLNEFKLKKGFKACFGTTVKSFIIKLRMEYAKELFKDKASTVSEVAYKCGYKDISHFSAAFKSFYGS
SPQKFKSNWDYIYFWITGILIFS
>Mature_343_residues
MKIKSQLSAHEKPIINIEIKDHYDPKSILTEEIIDIKKEETDEIKSHILSTDGMVLIDTQICLSKSQTDVFEINEECVVM
DFVNSGNIETNIELPESDKRIKESTHNIFYTTKFKATYTIPAFEKVNYLAIIFSKEFYYNIINEDWKVHEKFSKNIHLKK
SSYLTNKYIPFTPSIQWIISEIRNCNRKGALKKMFLETKIRELLIHQLEAIITQPGQKNKIDDEDYSKLLEAKLILEKDY
VHAPNLTELSRMISLNEFKLKKGFKACFGTTVKSFIIKLRMEYAKELFKDKASTVSEVAYKCGYKDISHFSAAFKSFYGS
SPQKFKSNWDYIYFWITGILIFS

Specific function: Positive activator of the genes for pyochelin and ferripyochelin receptors [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018062
- InterPro:   IPR018060 [H]

Pfam domain/function: PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 40089; Mature: 40089

Theoretical pI: Translated: 8.41; Mature: 8.41

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKIKSQLSAHEKPIINIEIKDHYDPKSILTEEIIDIKKEETDEIKSHILSTDGMVLIDTQ
CCCHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHCCCHHHHHHHHHHCCCCEEEEEHH
ICLSKSQTDVFEINEECVVMDFVNSGNIETNIELPESDKRIKESTHNIFYTTKFKATYTI
HHHCCCCCCEEECCCCEEEEEEECCCCEEEEEECCCCHHHHHHCCCCEEEEEEEEEEEEC
PAFEKVNYLAIIFSKEFYYNIINEDWKVHEKFSKNIHLKKSSYLTNKYIPFTPSIQWIIS
CCHHCCCEEEEEEEHHHHHHHHCCCHHHHHHHCCCEEEECCCCCCCCCCCCCCCHHHHHH
EIRNCNRKGALKKMFLETKIRELLIHQLEAIITQPGQKNKIDDEDYSKLLEAKLILEKDY
HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCC
VHAPNLTELSRMISLNEFKLKKGFKACFGTTVKSFIIKLRMEYAKELFKDKASTVSEVAY
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KCGYKDISHFSAAFKSFYGSSPQKFKSNWDYIYFWITGILIFS
HCCCHHHHHHHHHHHHHHCCCCHHHHCCCCEEEEEEHHHHHCC
>Mature Secondary Structure
MKIKSQLSAHEKPIINIEIKDHYDPKSILTEEIIDIKKEETDEIKSHILSTDGMVLIDTQ
CCCHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHCCCHHHHHHHHHHCCCCEEEEEHH
ICLSKSQTDVFEINEECVVMDFVNSGNIETNIELPESDKRIKESTHNIFYTTKFKATYTI
HHHCCCCCCEEECCCCEEEEEEECCCCEEEEEECCCCHHHHHHCCCCEEEEEEEEEEEEC
PAFEKVNYLAIIFSKEFYYNIINEDWKVHEKFSKNIHLKKSSYLTNKYIPFTPSIQWIIS
CCHHCCCEEEEEEEHHHHHHHHCCCHHHHHHHCCCEEEECCCCCCCCCCCCCCCHHHHHH
EIRNCNRKGALKKMFLETKIRELLIHQLEAIITQPGQKNKIDDEDYSKLLEAKLILEKDY
HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCC
VHAPNLTELSRMISLNEFKLKKGFKACFGTTVKSFIIKLRMEYAKELFKDKASTVSEVAY
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KCGYKDISHFSAAFKSFYGSSPQKFKSNWDYIYFWITGILIFS
HCCCHHHHHHHHHHHHHHCCCCHHHHCCCCEEEEEEHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8397186; 10984043 [H]