| Definition | Flavobacterium johnsoniae UW101 chromosome, complete genome. |
|---|---|
| Accession | NC_009441 |
| Length | 6,096,872 |
Click here to switch to the map view.
The map label for this gene is 146301840
Identifier: 146301840
GI number: 146301840
Start: 4930085
End: 4931761
Strand: Reverse
Name: 146301840
Synonym: Fjoh_4104
Alternate gene names: NA
Gene position: 4931761-4930085 (Counterclockwise)
Preceding gene: 146301841
Following gene: 146301839
Centisome position: 80.89
GC content: 36.31
Gene sequence:
>1677_bases ATGTTTTCAAAAGACACAAAATACAACTTCAAATTAAAAACCGCTTTCATAATGCTGGTAACTGTCTGCGTCCAAGCCAC AGCACAAACCACAGCATGGAAACCAGCTTCATTTGAAATTGTAAAATCAAAATACAAGACATTCAAAACCGCACAATACG CTCATGTATTTTCAGGAAGCAAACACAATATTGCCCGTTTAGCTCCAGAATTGCAAGGCTTAACAGGAATTGAACTTCCT TTAGATAAATATAAAAATGAAAATAATGCTCCATTACAATTAAAATTTAAAGAACAAGTTCAGGTTTTGATTGGAGTTTT TCAAGAAAATAATTCAGATTATCTTCAAGCTGATAAGTTTCAAAATGTCAAATTAATTTTAGAAAACGGATTGACCATTA CAGGTTTACCTCCAGTAAATGTATATGCGATTTCTTTCTCAAAAGGAACACAAACATTAAATTTTGGAAAAGGATTATTT GCAGTTTTAGGAGTTGTAAAAGCTTCTGAAAAACTAGAACCAAGAAACGCCAATTTTCCAGATGGAAAACTTTGGAATCC AACTTTTATCGTAGAAGGATTTTCAGATGAAAAACCGCTTTTCGAAGTTATTGGCGGAGAAAATAAACCCGTTATTGATG AAGGAATGTCTGGAACTGAAGGAATTCAGGGTGGTTTTGAAGGCGGACGCGTTGTAAAAGTTGGCGATATGTATCACATG TTTCCAACTGAAAGAGCAGGTGAAAAAGGCGTTGATTACTATTACGATCGTGTAAAAACCAAAATCGGACATTGGACAAG TAAAGATGCAATCCATTGGAAAAGAGAATCAACTATTTATCAAGCAAGCGGAACTTATGCCGTTACAGAAGATGATAATC CAATGAATGATCGTCGTGCAGCTATTTGGTCTTATATGCCAATTTTCAACGAAAAAGCAAACAAATGGTATGGCTATTAT TTGGCGTATACGGTAAGTAAAGAAATAGAACCAAATCATTCATTCGGAAGAATTTGGCGTTGTGAATCGACTGTAGATGG AATCGACGGAATTGGTGGTCCTTATAAAAATATTGGAATCATTATGGAACCAGGATTAGATTCTCTACCATGGGAAGGTC GTCAGGGTGTTGCTTCCTTTTTTCCTTATCAGGTAGGCGATAAATACTTCGGATTTTACAGCGGTGCGTATCCGTTCAAT TCATGGGCAGATTATCCGAAAAAATCAGGAAAGGGATGGTTTGTTGCATTAGCTGAATCAAAAAGTTTAGAAGGTCCTTG GTTGAGAATGAATAAAGGTTTGGAACCAATTAAGACCATGCATCCGTTATTCGTAGAAAATCCAATTGTAAGTCAGTTGC CAAACGGAATGTACATCGCGATTTTCGACGGAGGGCCAGACGGCTGGGGGCATCATTTACCAAATATGATTGCGTATTCA TTATCTGCAGACGGAATCAATTGGGCAGAAGCACATTATTTACCAATAGAAACTAAAGTCGATAAATGGTGGGATATTAT GCGAACGCCTTTGTGTTTAATCCCAGAAGGAAATGACGTTTACACTATAGTCTATAACGCCATCGACCTAAAAAGAAGAT TTCATCCAACAGGAATGGTAAAGGTAAAATTGAATAAAGATGTGATGGAGTCTAAATTAAAGGAATTGAAAAAATAA
Upstream 100 bases:
>100_bases ACGAAGCAACCTCACTATGATTGCACAAAGCTTGATATAGTAAATGTGATTGCTCGTTCCTCGCAATGACGCAAAATCAG AACCAAAAAATAAAAAACCA
Downstream 100 bases:
>100_bases ATTAAAGTTTCCCGCAGATTTTGCAGATCAGGCAGATAAAAAAATCAGCTAAATCAGCAAAATCTGCGAGAGAAACAAAA TAAAATCCGCGTCATTCGCG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 558; Mature: 558
Protein sequence:
>558_residues MFSKDTKYNFKLKTAFIMLVTVCVQATAQTTAWKPASFEIVKSKYKTFKTAQYAHVFSGSKHNIARLAPELQGLTGIELP LDKYKNENNAPLQLKFKEQVQVLIGVFQENNSDYLQADKFQNVKLILENGLTITGLPPVNVYAISFSKGTQTLNFGKGLF AVLGVVKASEKLEPRNANFPDGKLWNPTFIVEGFSDEKPLFEVIGGENKPVIDEGMSGTEGIQGGFEGGRVVKVGDMYHM FPTERAGEKGVDYYYDRVKTKIGHWTSKDAIHWKRESTIYQASGTYAVTEDDNPMNDRRAAIWSYMPIFNEKANKWYGYY LAYTVSKEIEPNHSFGRIWRCESTVDGIDGIGGPYKNIGIIMEPGLDSLPWEGRQGVASFFPYQVGDKYFGFYSGAYPFN SWADYPKKSGKGWFVALAESKSLEGPWLRMNKGLEPIKTMHPLFVENPIVSQLPNGMYIAIFDGGPDGWGHHLPNMIAYS LSADGINWAEAHYLPIETKVDKWWDIMRTPLCLIPEGNDVYTIVYNAIDLKRRFHPTGMVKVKLNKDVMESKLKELKK
Sequences:
>Translated_558_residues MFSKDTKYNFKLKTAFIMLVTVCVQATAQTTAWKPASFEIVKSKYKTFKTAQYAHVFSGSKHNIARLAPELQGLTGIELP LDKYKNENNAPLQLKFKEQVQVLIGVFQENNSDYLQADKFQNVKLILENGLTITGLPPVNVYAISFSKGTQTLNFGKGLF AVLGVVKASEKLEPRNANFPDGKLWNPTFIVEGFSDEKPLFEVIGGENKPVIDEGMSGTEGIQGGFEGGRVVKVGDMYHM FPTERAGEKGVDYYYDRVKTKIGHWTSKDAIHWKRESTIYQASGTYAVTEDDNPMNDRRAAIWSYMPIFNEKANKWYGYY LAYTVSKEIEPNHSFGRIWRCESTVDGIDGIGGPYKNIGIIMEPGLDSLPWEGRQGVASFFPYQVGDKYFGFYSGAYPFN SWADYPKKSGKGWFVALAESKSLEGPWLRMNKGLEPIKTMHPLFVENPIVSQLPNGMYIAIFDGGPDGWGHHLPNMIAYS LSADGINWAEAHYLPIETKVDKWWDIMRTPLCLIPEGNDVYTIVYNAIDLKRRFHPTGMVKVKLNKDVMESKLKELKK >Mature_558_residues MFSKDTKYNFKLKTAFIMLVTVCVQATAQTTAWKPASFEIVKSKYKTFKTAQYAHVFSGSKHNIARLAPELQGLTGIELP LDKYKNENNAPLQLKFKEQVQVLIGVFQENNSDYLQADKFQNVKLILENGLTITGLPPVNVYAISFSKGTQTLNFGKGLF AVLGVVKASEKLEPRNANFPDGKLWNPTFIVEGFSDEKPLFEVIGGENKPVIDEGMSGTEGIQGGFEGGRVVKVGDMYHM FPTERAGEKGVDYYYDRVKTKIGHWTSKDAIHWKRESTIYQASGTYAVTEDDNPMNDRRAAIWSYMPIFNEKANKWYGYY LAYTVSKEIEPNHSFGRIWRCESTVDGIDGIGGPYKNIGIIMEPGLDSLPWEGRQGVASFFPYQVGDKYFGFYSGAYPFN SWADYPKKSGKGWFVALAESKSLEGPWLRMNKGLEPIKTMHPLFVENPIVSQLPNGMYIAIFDGGPDGWGHHLPNMIAYS LSADGINWAEAHYLPIETKVDKWWDIMRTPLCLIPEGNDVYTIVYNAIDLKRRFHPTGMVKVKLNKDVMESKLKELKK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 63019; Mature: 63019
Theoretical pI: Translated: 8.55; Mature: 8.55
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MFSKDTKYNFKLKTAFIMLVTVCVQATAQTTAWKPASFEIVKSKYKTFKTAQYAHVFSGS CCCCCCCEEEEHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCC KHNIARLAPELQGLTGIELPLDKYKNENNAPLQLKFKEQVQVLIGVFQENNSDYLQADKF CCCHHHHHHHHCCCCCCCCCHHHHCCCCCCCEEEEHHHHHHHHHHHHCCCCCCCEECCCC QNVKLILENGLTITGLPPVNVYAISFSKGTQTLNFGKGLFAVLGVVKASEKLEPRNANFP CCEEEEEECCCEEECCCCCEEEEEEECCCCCEEECCCHHHHHHHHHHHHHCCCCCCCCCC DGKLWNPTFIVEGFSDEKPLFEVIGGENKPVIDEGMSGTEGIQGGFEGGRVVKVGDMYHM CCCCCCCEEEEECCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCEEEE FPTERAGEKGVDYYYDRVKTKIGHWTSKDAIHWKRESTIYQASGTYAVTEDDNPMNDRRA CCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEECCCEEEECCCCEEEECCCCCCCCHHH AIWSYMPIFNEKANKWYGYYLAYTVSKEIEPNHSFGRIWRCESTVDGIDGIGGPYKNIGI HHHHHHHHHCCCCCCEEEEEEEEEEECCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCE IMEPGLDSLPWEGRQGVASFFPYQVGDKYFGFYSGAYPFNSWADYPKKSGKGWFVALAES EECCCCCCCCCCCCCCHHHHCCHHCCCCEEEEECCCCCCCCHHCCCCCCCCEEEEEEECC KSLEGPWLRMNKGLEPIKTMHPLFVENPIVSQLPNGMYIAIFDGGPDGWGHHLPNMIAYS CCCCCCEEEECCCCCHHHHHCCHHHCCCHHHHCCCCEEEEEECCCCCCCHHHCCHHEEEE LSADGINWAEAHYLPIETKVDKWWDIMRTPLCLIPEGNDVYTIVYNAIDLKRRFHPTGMV ECCCCCCCCCEEEEECCCCHHHHHHHHCCCEEEEECCCCEEEEEEEHHHHHHHCCCCCEE KVKLNKDVMESKLKELKK EEEECHHHHHHHHHHHCC >Mature Secondary Structure MFSKDTKYNFKLKTAFIMLVTVCVQATAQTTAWKPASFEIVKSKYKTFKTAQYAHVFSGS CCCCCCCEEEEHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCC KHNIARLAPELQGLTGIELPLDKYKNENNAPLQLKFKEQVQVLIGVFQENNSDYLQADKF CCCHHHHHHHHCCCCCCCCCHHHHCCCCCCCEEEEHHHHHHHHHHHHCCCCCCCEECCCC QNVKLILENGLTITGLPPVNVYAISFSKGTQTLNFGKGLFAVLGVVKASEKLEPRNANFP CCEEEEEECCCEEECCCCCEEEEEEECCCCCEEECCCHHHHHHHHHHHHHCCCCCCCCCC DGKLWNPTFIVEGFSDEKPLFEVIGGENKPVIDEGMSGTEGIQGGFEGGRVVKVGDMYHM CCCCCCCEEEEECCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCEEEE FPTERAGEKGVDYYYDRVKTKIGHWTSKDAIHWKRESTIYQASGTYAVTEDDNPMNDRRA CCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEECCCEEEECCCCEEEECCCCCCCCHHH AIWSYMPIFNEKANKWYGYYLAYTVSKEIEPNHSFGRIWRCESTVDGIDGIGGPYKNIGI HHHHHHHHHCCCCCCEEEEEEEEEEECCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCE IMEPGLDSLPWEGRQGVASFFPYQVGDKYFGFYSGAYPFNSWADYPKKSGKGWFVALAES EECCCCCCCCCCCCCCHHHHCCHHCCCCEEEEECCCCCCCCHHCCCCCCCCEEEEEEECC KSLEGPWLRMNKGLEPIKTMHPLFVENPIVSQLPNGMYIAIFDGGPDGWGHHLPNMIAYS CCCCCCEEEECCCCCHHHHHCCHHHCCCHHHHCCCCEEEEEECCCCCCCHHHCCHHEEEE LSADGINWAEAHYLPIETKVDKWWDIMRTPLCLIPEGNDVYTIVYNAIDLKRRFHPTGMV ECCCCCCCCCEEEEECCCCHHHHHHHHCCCEEEEECCCCEEEEEEEHHHHHHHCCCCCEE KVKLNKDVMESKLKELKK EEEECHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA