Definition Flavobacterium johnsoniae UW101 chromosome, complete genome.
Accession NC_009441
Length 6,096,872

Click here to switch to the map view.

The map label for this gene is 146301812

Identifier: 146301812

GI number: 146301812

Start: 4872031

End: 4874784

Strand: Reverse

Name: 146301812

Synonym: Fjoh_4076

Alternate gene names: NA

Gene position: 4874784-4872031 (Counterclockwise)

Preceding gene: 146301813

Following gene: 146301811

Centisome position: 79.96

GC content: 36.35

Gene sequence:

>2754_bases
ATGAATACCCAAAAACAGCATACTATGAAATATTTACAATTACTTTTTTTATGTCTTTACGTCTCTTTCGCGACAGCGCA
GAACATCACAGTTGTGAGTGATCCGAGTTCGCCGAGAGCAAAATTTGGAGCAGAGAAATTATCAGAAACCCTTTCAGCAA
AAGGATTCAGCGTAACTTCTTCTGATAAATTCAAAAAATCAAAAGATAAAGTAATTGTAATTGGAGAAAAAGGAACCGAT
TTCTGGAAGAAAAATGCTAAAAGCGCTAAAATCGATGATAGCAAATTAACCAAGAAAGAAGGTTTCCAGATTCGCACTCA
AAATAATATAATTTATATTGAAGGAACAGATGCAAGCGGAGCTTTGTATGGCGCTTTAGAATTAACAGATAAAATTAAAG
CTTCAGGAAAACTTCCTTCAGAAATCAATATTGATGATAGCCCAGAAATGGTTTTGAGAGGAGCTTGCATCGGAATGCAG
AAACCGGTTTATCTCCCAGGTCGTGATGTTTACGAATATCCATATACGCCAGAAACTTTCCCGTGGTTTTACGATAAAGC
TTTATGGGTAAAATATTTAGATATGCTGGTAGAAAACCGCATGAACTCTTTGTATTTATGGAACGGACATCCATTTGCTT
CTTTGGTGAAACTAAAAGAATATCCGTTTGCAGTTGAAGTGAGTGATGAAGATTTCAAAAAGAACGAAGAAATCTATAAA
TTCTTAACAGTTGAAGCCAACAAACGTGGAATCTGGGTAATTCAGATGTTTTATAACATTATTGTTTCTAAGCCTTTTGC
AGAGCATTACAACATTAAAACACAAGATCGTTCAAGACCAATCACGCCATTATTGTCTGATTATACTAGAAAATCTATTG
CAGCTTTTATCGAAAAATATCCAAATGTTGGATTAATGGTTTGTTTGGGAGAAGCAATCAATACCGTTGATGATGATGTA
GAATGGTTCACCAAAACTATTATTCCGGGTGTTCGTGACGGTTTACAAGCATTAGGAAAAACAGAAGAACCACCAATTAT
TCTTCGTTCTCATGATACAGATGGGCCTTTAGTAATGGAAAAATCACTTCCGTTATACAAAAACTTATATACAGAAAGTA
AATATACAGGAGAATCTTTAACGACTTATACGCCGGGAGGTCCTTGGGGAGAAACGCACAAACAATTAAGCGCTTTAAAA
TCAATTCACATTGAGAACGTTCATATTTTGGCTAATTTAGAACCTTTCAGATACGGTTCACCAGACTTTATTCAGAAAAC
GGTAAAAGCAATGCATAGCGTTCACGGAGCAAATGCACTGCATTTATATCCGCAAGCTTCGTATTGGGATTGGCCATATT
CGGCAGATAAAACGAAATCAGGAGAACGTTTATTAGAAATGGATCGTGACTGGATTTGGTACAAAGCTTGGGCAAGATAT
GCTTGGGACAGCAAAAGAGATAGAAATGAAGAAGTTAAATTTTGGGATAATGATTTAGCTGCAAAATTCGGAACGAGTCA
GGAAGCTGCAAATAACATTTTAAAAGCTTACGAAGAAACAGGAGAAATTGCTCCAAAAACATTAAGACGTTTCGGAATTA
CAGAAGGTAACCGTCAGACTTTATTGTTGGGAATGTTTGAAAGTCAGTTGGTCAATCCGTCAAAATGGAGAGTTTATCCA
GGATTCCACGAATCATGCGGACCAGCGGGCGAATTGCTTTTAGAATATGCTAAAAAAGAGTGGAACAAAGAACCGCATTC
GGGCGAACTTCCAACGCAGATTATTGCTGAAATTACAGAACACGGAAGATTAGCTGTTGAAGCAATCGACAAAGCTGAAG
CAAGTGTAACCAAAGACAAAGAAGAATTTGAACGTCTTAAAAATGATATGCATGCGTATAAGGCTTTCGCCGATTTTTTC
TCAGAAAAAGTAAAAGCAGCTTTATTGGTTTTAAGATACAGTTATTCAAATGATATTACAGATTTAGATAAAGCTTTGCC
TCATTTAGAAAAGAGCATTGAGTACTATGAGTTATTGGTAAAACTAACAAAAGATACGTACTATTATGCTAACAGTATGC
AGACTGCTCAACGCCGAATCCCGATTGGAGGAGACGACGGAAACAACAAAACTTGGGCAGAATTGTTACCGCATTACGAG
CGTGAATTGGCTAATTTCAAAAGAAATCTAGAGAAACTAAAATCTTCAAAAGATGGTAAAATAGAAACTAAAGAAGGAAA
ACCTTGGAAACCAGCCGAAGTAACTTTTATAGATGAAAAACCGGGAACGTATCTAGTTAAAACAGGGACAAAAGTGTACG
GAACAGATATTTCTGAATTGACTAAAGTTGCTCCAGAACTTCAGAATTTAAGAGGTTATTCTTTTGTTGAAAACGATCAA
AACGAAAAAGGAACACATTTGAAGTTTAGAAATACAAAAGCGGTTAAATTAGTGGTAGGATATTTTAATTCTGATCAGAA
GCGATTTTTATTGCCGCCAAGTTTGGAGACAGATGCAGCAGGAAATGCGCACGGTCAAGCTGAAGTAATTCTGGCAAGTG
CAATGAATTTAAAAGATTTACCTCGTGTAAACATTCATACCTATACGTTCCAGCCGGGAGAGAATAAATTAGATTTAGGA
AAAGGAAAAGTATTGATTTTAGGTTTCATCGACGCAGATCAAACTATAACACCACGTGATGTTGGATATATCGATGCAGG
AGAAAAAGCAGCAATTGACTGGTTGTTTTATTAG

Upstream 100 bases:

>100_bases
TTAAACAACACAATTTTTCACTATAAATCTGCCGAATTTGCTAAATCTGCGAGAGATATTTTTCACGCAGATCAGGCAGA
TTTAGCAGATTATTTTTAGA

Downstream 100 bases:

>100_bases
TTTGCATTCCTGCAAGGTTTTGAAAACCTTGTGGGTATTCTAAATGAACGTTAAAAATAAACCTACAAGGTTTTCAAAAC
CTTGCAGGAAATAGAAAATA

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 917; Mature: 917

Protein sequence:

>917_residues
MNTQKQHTMKYLQLLFLCLYVSFATAQNITVVSDPSSPRAKFGAEKLSETLSAKGFSVTSSDKFKKSKDKVIVIGEKGTD
FWKKNAKSAKIDDSKLTKKEGFQIRTQNNIIYIEGTDASGALYGALELTDKIKASGKLPSEINIDDSPEMVLRGACIGMQ
KPVYLPGRDVYEYPYTPETFPWFYDKALWVKYLDMLVENRMNSLYLWNGHPFASLVKLKEYPFAVEVSDEDFKKNEEIYK
FLTVEANKRGIWVIQMFYNIIVSKPFAEHYNIKTQDRSRPITPLLSDYTRKSIAAFIEKYPNVGLMVCLGEAINTVDDDV
EWFTKTIIPGVRDGLQALGKTEEPPIILRSHDTDGPLVMEKSLPLYKNLYTESKYTGESLTTYTPGGPWGETHKQLSALK
SIHIENVHILANLEPFRYGSPDFIQKTVKAMHSVHGANALHLYPQASYWDWPYSADKTKSGERLLEMDRDWIWYKAWARY
AWDSKRDRNEEVKFWDNDLAAKFGTSQEAANNILKAYEETGEIAPKTLRRFGITEGNRQTLLLGMFESQLVNPSKWRVYP
GFHESCGPAGELLLEYAKKEWNKEPHSGELPTQIIAEITEHGRLAVEAIDKAEASVTKDKEEFERLKNDMHAYKAFADFF
SEKVKAALLVLRYSYSNDITDLDKALPHLEKSIEYYELLVKLTKDTYYYANSMQTAQRRIPIGGDDGNNKTWAELLPHYE
RELANFKRNLEKLKSSKDGKIETKEGKPWKPAEVTFIDEKPGTYLVKTGTKVYGTDISELTKVAPELQNLRGYSFVENDQ
NEKGTHLKFRNTKAVKLVVGYFNSDQKRFLLPPSLETDAAGNAHGQAEVILASAMNLKDLPRVNIHTYTFQPGENKLDLG
KGKVLILGFIDADQTITPRDVGYIDAGEKAAIDWLFY

Sequences:

>Translated_917_residues
MNTQKQHTMKYLQLLFLCLYVSFATAQNITVVSDPSSPRAKFGAEKLSETLSAKGFSVTSSDKFKKSKDKVIVIGEKGTD
FWKKNAKSAKIDDSKLTKKEGFQIRTQNNIIYIEGTDASGALYGALELTDKIKASGKLPSEINIDDSPEMVLRGACIGMQ
KPVYLPGRDVYEYPYTPETFPWFYDKALWVKYLDMLVENRMNSLYLWNGHPFASLVKLKEYPFAVEVSDEDFKKNEEIYK
FLTVEANKRGIWVIQMFYNIIVSKPFAEHYNIKTQDRSRPITPLLSDYTRKSIAAFIEKYPNVGLMVCLGEAINTVDDDV
EWFTKTIIPGVRDGLQALGKTEEPPIILRSHDTDGPLVMEKSLPLYKNLYTESKYTGESLTTYTPGGPWGETHKQLSALK
SIHIENVHILANLEPFRYGSPDFIQKTVKAMHSVHGANALHLYPQASYWDWPYSADKTKSGERLLEMDRDWIWYKAWARY
AWDSKRDRNEEVKFWDNDLAAKFGTSQEAANNILKAYEETGEIAPKTLRRFGITEGNRQTLLLGMFESQLVNPSKWRVYP
GFHESCGPAGELLLEYAKKEWNKEPHSGELPTQIIAEITEHGRLAVEAIDKAEASVTKDKEEFERLKNDMHAYKAFADFF
SEKVKAALLVLRYSYSNDITDLDKALPHLEKSIEYYELLVKLTKDTYYYANSMQTAQRRIPIGGDDGNNKTWAELLPHYE
RELANFKRNLEKLKSSKDGKIETKEGKPWKPAEVTFIDEKPGTYLVKTGTKVYGTDISELTKVAPELQNLRGYSFVENDQ
NEKGTHLKFRNTKAVKLVVGYFNSDQKRFLLPPSLETDAAGNAHGQAEVILASAMNLKDLPRVNIHTYTFQPGENKLDLG
KGKVLILGFIDADQTITPRDVGYIDAGEKAAIDWLFY
>Mature_917_residues
MNTQKQHTMKYLQLLFLCLYVSFATAQNITVVSDPSSPRAKFGAEKLSETLSAKGFSVTSSDKFKKSKDKVIVIGEKGTD
FWKKNAKSAKIDDSKLTKKEGFQIRTQNNIIYIEGTDASGALYGALELTDKIKASGKLPSEINIDDSPEMVLRGACIGMQ
KPVYLPGRDVYEYPYTPETFPWFYDKALWVKYLDMLVENRMNSLYLWNGHPFASLVKLKEYPFAVEVSDEDFKKNEEIYK
FLTVEANKRGIWVIQMFYNIIVSKPFAEHYNIKTQDRSRPITPLLSDYTRKSIAAFIEKYPNVGLMVCLGEAINTVDDDV
EWFTKTIIPGVRDGLQALGKTEEPPIILRSHDTDGPLVMEKSLPLYKNLYTESKYTGESLTTYTPGGPWGETHKQLSALK
SIHIENVHILANLEPFRYGSPDFIQKTVKAMHSVHGANALHLYPQASYWDWPYSADKTKSGERLLEMDRDWIWYKAWARY
AWDSKRDRNEEVKFWDNDLAAKFGTSQEAANNILKAYEETGEIAPKTLRRFGITEGNRQTLLLGMFESQLVNPSKWRVYP
GFHESCGPAGELLLEYAKKEWNKEPHSGELPTQIIAEITEHGRLAVEAIDKAEASVTKDKEEFERLKNDMHAYKAFADFF
SEKVKAALLVLRYSYSNDITDLDKALPHLEKSIEYYELLVKLTKDTYYYANSMQTAQRRIPIGGDDGNNKTWAELLPHYE
RELANFKRNLEKLKSSKDGKIETKEGKPWKPAEVTFIDEKPGTYLVKTGTKVYGTDISELTKVAPELQNLRGYSFVENDQ
NEKGTHLKFRNTKAVKLVVGYFNSDQKRFLLPPSLETDAAGNAHGQAEVILASAMNLKDLPRVNIHTYTFQPGENKLDLG
KGKVLILGFIDADQTITPRDVGYIDAGEKAAIDWLFY

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 104463; Mature: 104463

Theoretical pI: Translated: 6.94; Mature: 6.94

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNTQKQHTMKYLQLLFLCLYVSFATAQNITVVSDPSSPRAKFGAEKLSETLSAKGFSVTS
CCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHCHHHHHHHHHCCCCEECC
SDKFKKSKDKVIVIGEKGTDFWKKNAKSAKIDDSKLTKKEGFQIRTQNNIIYIEGTDASG
CHHHHCCCCCEEEEECCCCHHHHCCCCCCCCCHHHHHHHCCCEEEECCCEEEEECCCCCC
ALYGALELTDKIKASGKLPSEINIDDSPEMVLRGACIGMQKPVYLPGRDVYEYPYTPETF
CEEEEEEHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEECCCCCCCCCCCCCCCC
PWFYDKALWVKYLDMLVENRMNSLYLWNGHPFASLVKLKEYPFAVEVSDEDFKKNEEIYK
CHHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHCCCEEEEECCHHHHCCCCEEE
FLTVEANKRGIWVIQMFYNIIVSKPFAEHYNIKTQDRSRPITPLLSDYTRKSIAAFIEKY
EEEEECCCCCEEHHHHHHHHHHCCCHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHC
PNVGLMVCLGEAINTVDDDVEWFTKTIIPGVRDGLQALGKTEEPPIILRSHDTDGPLVME
CCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCEEEE
KSLPLYKNLYTESKYTGESLTTYTPGGPWGETHKQLSALKSIHIENVHILANLEPFRYGS
CCCCHHHHHHCCCCCCCCCCEEECCCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCC
PDFIQKTVKAMHSVHGANALHLYPQASYWDWPYSADKTKSGERLLEMDRDWIWYKAWARY
HHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHCCCEEHHHHHHHH
AWDSKRDRNEEVKFWDNDLAAKFGTSQEAANNILKAYEETGEIAPKTLRRFGITEGNRQT
HCCCCCCCCCCCEEECCHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCE
LLLGMFESQLVNPSKWRVYPGFHESCGPAGELLLEYAKKEWNKEPHSGELPTQIIAEITE
EEEEEHHHHCCCCCCEEECCCCCHHCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHH
HGRLAVEAIDKAEASVTKDKEEFERLKNDMHAYKAFADFFSEKVKAALLVLRYSYSNDIT
CCCEEEEHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCH
DLDKALPHLEKSIEYYELLVKLTKDTYYYANSMQTAQRRIPIGGDDGNNKTWAELLPHYE
HHHHHHHHHHHHHHHHHHHHHHHHCCEEECCCHHHHHHCCCCCCCCCCCCHHHHHHHHHH
RELANFKRNLEKLKSSKDGKIETKEGKPWKPAEVTFIDEKPGTYLVKTGTKVYGTDISEL
HHHHHHHHHHHHHHCCCCCCEECCCCCCCCCCEEEEEECCCCEEEEECCCEEECCCHHHH
TKVAPELQNLRGYSFVENDQNEKGTHLKFRNTKAVKLVVGYFNSDQKRFLLPPSLETDAA
HHHHHHHHHCCCCEEECCCCCCCCCEEEEECCCEEEEEEEEECCCCCEEECCCCCCCCCC
GNAHGQAEVILASAMNLKDLPRVNIHTYTFQPGENKLDLGKGKVLILGFIDADQTITPRD
CCCCCCEEEEEEECCCCCCCCCCEEEEEEECCCCCCEECCCCCEEEEEEECCCCCCCCCC
VGYIDAGEKAAIDWLFY
CCEECCCCCCCEEEEEC
>Mature Secondary Structure
MNTQKQHTMKYLQLLFLCLYVSFATAQNITVVSDPSSPRAKFGAEKLSETLSAKGFSVTS
CCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHCHHHHHHHHHCCCCEECC
SDKFKKSKDKVIVIGEKGTDFWKKNAKSAKIDDSKLTKKEGFQIRTQNNIIYIEGTDASG
CHHHHCCCCCEEEEECCCCHHHHCCCCCCCCCHHHHHHHCCCEEEECCCEEEEECCCCCC
ALYGALELTDKIKASGKLPSEINIDDSPEMVLRGACIGMQKPVYLPGRDVYEYPYTPETF
CEEEEEEHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEECCCCCCCCCCCCCCCC
PWFYDKALWVKYLDMLVENRMNSLYLWNGHPFASLVKLKEYPFAVEVSDEDFKKNEEIYK
CHHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHCCCEEEEECCHHHHCCCCEEE
FLTVEANKRGIWVIQMFYNIIVSKPFAEHYNIKTQDRSRPITPLLSDYTRKSIAAFIEKY
EEEEECCCCCEEHHHHHHHHHHCCCHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHC
PNVGLMVCLGEAINTVDDDVEWFTKTIIPGVRDGLQALGKTEEPPIILRSHDTDGPLVME
CCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCEEEE
KSLPLYKNLYTESKYTGESLTTYTPGGPWGETHKQLSALKSIHIENVHILANLEPFRYGS
CCCCHHHHHHCCCCCCCCCCEEECCCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCC
PDFIQKTVKAMHSVHGANALHLYPQASYWDWPYSADKTKSGERLLEMDRDWIWYKAWARY
HHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHCCCEEHHHHHHHH
AWDSKRDRNEEVKFWDNDLAAKFGTSQEAANNILKAYEETGEIAPKTLRRFGITEGNRQT
HCCCCCCCCCCCEEECCHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCE
LLLGMFESQLVNPSKWRVYPGFHESCGPAGELLLEYAKKEWNKEPHSGELPTQIIAEITE
EEEEEHHHHCCCCCCEEECCCCCHHCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHH
HGRLAVEAIDKAEASVTKDKEEFERLKNDMHAYKAFADFFSEKVKAALLVLRYSYSNDIT
CCCEEEEHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCH
DLDKALPHLEKSIEYYELLVKLTKDTYYYANSMQTAQRRIPIGGDDGNNKTWAELLPHYE
HHHHHHHHHHHHHHHHHHHHHHHHCCEEECCCHHHHHHCCCCCCCCCCCCHHHHHHHHHH
RELANFKRNLEKLKSSKDGKIETKEGKPWKPAEVTFIDEKPGTYLVKTGTKVYGTDISEL
HHHHHHHHHHHHHHCCCCCCEECCCCCCCCCCEEEEEECCCCEEEEECCCEEECCCHHHH
TKVAPELQNLRGYSFVENDQNEKGTHLKFRNTKAVKLVVGYFNSDQKRFLLPPSLETDAA
HHHHHHHHHCCCCEEECCCCCCCCCEEEEECCCEEEEEEEEECCCCCEEECCCCCCCCCC
GNAHGQAEVILASAMNLKDLPRVNIHTYTFQPGENKLDLGKGKVLILGFIDADQTITPRD
CCCCCCEEEEEEECCCCCCCCCCEEEEEEECCCCCCEECCCCCEEEEEEECCCCCCCCCC
VGYIDAGEKAAIDWLFY
CCEECCCCCCCEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA