| Definition | Flavobacterium johnsoniae UW101 chromosome, complete genome. |
|---|---|
| Accession | NC_009441 |
| Length | 6,096,872 |
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The map label for this gene is 146301669
Identifier: 146301669
GI number: 146301669
Start: 4680283
End: 4682133
Strand: Reverse
Name: 146301669
Synonym: Fjoh_3931
Alternate gene names: NA
Gene position: 4682133-4680283 (Counterclockwise)
Preceding gene: 146301670
Following gene: 146301668
Centisome position: 76.8
GC content: 38.03
Gene sequence:
>1851_bases ATGTTTACAAGTATATTAATTACTAAAAAACATGTTCTTATGGCAAGATTTTCAGATCAGGTAAAAATAACTATCGATGA CTTTAGCAAAAATGTTGTTTATTATGACTTAGGGATCACTCAAAAAATGATGGATCACCATTATTTCTCTTTTGTCTGGC AGCATGCGGCAGAAGCAGTTATTGATCCGCTAAAACAAGCCGCTGCAATTCGCAGATACCAGGGGCGGGAAGTTATTTTT ACTTTTAAAAGCCTTACCGGAATCCAGTTAATGGCAAAAGGAATTATTACAAATCTCGAATCTTATGATGTCGGCGGAAG TCCGGGCGGACTTTATGTAAAAGGAATAAGCCATACTATACTGCTTGATGATTTAAAAAAAGCCCGAACATTTTTAGACC GTAACCTGCAGGAAATTGCGCTTGATATTTTTGCTAATGAAACTGCCGGCGAATTTTATAACAGAGAGGCAATAGCGCCT ACTTTTACCACAATTTTTGATTACAAAGCGCAGTACAACGAAACAAGTTTTAACTTCCTGAAACGACTTTCCGCCTGTTA CGGACAATGGCTGTATTTTGACGGAATGCGCATGCAGTTTGGGCAGCTCAAAAACAGTAAGGTAAAACTTATCAATGGAG CTTCACTGCATAAATTTGGTATTCAGACTCATTTAGCATCGCATAAAACAGCTTTTGGAGCTTATGATTATAATAATGCA AAACAAATTGTCAGTTCTCAGCCCAAAACAAATCAGGGAAGCGGTGACGGTTTTTCCAGAACAGCTTTAGACAGGCAGGC ATCGGTCGCTCAGCCCAATTTGTTCGTTGCCGCTTTTACCAATCAGGTAAAAAATGCATCTCAAATAGAAGAAATGGTAA AACTGCAAACGGCAGGCAGAGATGCAAACAGTGTTTTTTATACAGGTGTTTCGTATCTGCCAATAGGAGTGGGACAGATT TTTATTATTCAAAACGAAACTGTCGAACATGAACTTGTAGCTGTAGAAGTTATACACCATTCTGAAGTTCACGGTAATTA TACCTGTGAGTTCAAAGCGATTCCTGCCGATGTTTCGGCACCGTATTATACCAATGTAGAAATTTTTGCAAAAGCAGAAA ACCAGCCCGCTATTGTAATAGACAACAATGATCCCGAAAGTTTAGGACGTGTAAAGGTCAGCTTTTACTGGGGAACAGGA AGCACAAAAACTGAATGGATTCGTGTGATGCAGTATTATTCCGGTTCTTCAAGAGGAATGTACTGGAGACCAGAAATTGG GGACGAAGTATTGGTAAGTTTTGAAAACGGCAACATTGACTTTCCTTATGTATCCGGTTCACACTACAACGGACAGGCAA AACCTGAGTTTTTTGACAGCAAAAACAGTATTAAAGGCTGGAAACTCCGTTTCGGGATGTTACTAAAATTTGTTGAAAAA GTAGGAATCTGGCTTTCTGACCCAAGCGGAAATGAAATTCATCTAGACGAAGAGAACAAAAACATAAACGCCACAACGCC GGAAACTTTTACCATTAGAGCAAAAAATATTGTTTTTGAGGCAACGGAAAGTATTACAGTAAAAGCCGGAACTAATATTC TCGAAACTGCGGGTATAAATAAAACTTTACAGGTTGGGGGGATTATGGATACTCAAGTTATAGGTAGTAATCTACTTCAT GTAAAAGGAGACTTTCATGAACAAATTGACGGTGATCTCCATTCTGAGACAAAACAAGATAGAAATACAATAAGTCATTC TGACTTTACTTCGCTAAGTCAAGAAAATGCTGAATTTCACTCAAAAAATGATATTCAAAATAATAGTACCGAGGATACTA CACAAAATTAA
Upstream 100 bases:
>100_bases ATTTAGACAGCCTTTTTGATTTATAAGCCTTCATTAAAAATTTACCTTATTCTGTTATAATAATACCTTTTAGAGGCTGT TTCTGAAAATTTGTAAAGAT
Downstream 100 bases:
>100_bases AAACTATTAAATTGAAATTAAAAGAATATGTCTAGGACAAGAATTGTAAAAGGGAAAATTACTGAAATTACAGGCGGAAC TTCAAGAATTTTTGCGAAGA
Product: Rhs element Vgr protein
Products: NA
Alternate protein names: Rhs Element Vgr Protein Family Protein; Type VI Secretion System Vgr Family Protein; Rhs Family Protein; VgrG Protein; Two Component LuxR Family Transcriptional Regulator; Phage Protein D; Phosphoserine Phosphatase SerB; VgrG Family T6SS G; Rhs Element Vgr Family Protein
Number of amino acids: Translated: 616; Mature: 616
Protein sequence:
>616_residues MFTSILITKKHVLMARFSDQVKITIDDFSKNVVYYDLGITQKMMDHHYFSFVWQHAAEAVIDPLKQAAAIRRYQGREVIF TFKSLTGIQLMAKGIITNLESYDVGGSPGGLYVKGISHTILLDDLKKARTFLDRNLQEIALDIFANETAGEFYNREAIAP TFTTIFDYKAQYNETSFNFLKRLSACYGQWLYFDGMRMQFGQLKNSKVKLINGASLHKFGIQTHLASHKTAFGAYDYNNA KQIVSSQPKTNQGSGDGFSRTALDRQASVAQPNLFVAAFTNQVKNASQIEEMVKLQTAGRDANSVFYTGVSYLPIGVGQI FIIQNETVEHELVAVEVIHHSEVHGNYTCEFKAIPADVSAPYYTNVEIFAKAENQPAIVIDNNDPESLGRVKVSFYWGTG STKTEWIRVMQYYSGSSRGMYWRPEIGDEVLVSFENGNIDFPYVSGSHYNGQAKPEFFDSKNSIKGWKLRFGMLLKFVEK VGIWLSDPSGNEIHLDEENKNINATTPETFTIRAKNIVFEATESITVKAGTNILETAGINKTLQVGGIMDTQVIGSNLLH VKGDFHEQIDGDLHSETKQDRNTISHSDFTSLSQENAEFHSKNDIQNNSTEDTTQN
Sequences:
>Translated_616_residues MFTSILITKKHVLMARFSDQVKITIDDFSKNVVYYDLGITQKMMDHHYFSFVWQHAAEAVIDPLKQAAAIRRYQGREVIF TFKSLTGIQLMAKGIITNLESYDVGGSPGGLYVKGISHTILLDDLKKARTFLDRNLQEIALDIFANETAGEFYNREAIAP TFTTIFDYKAQYNETSFNFLKRLSACYGQWLYFDGMRMQFGQLKNSKVKLINGASLHKFGIQTHLASHKTAFGAYDYNNA KQIVSSQPKTNQGSGDGFSRTALDRQASVAQPNLFVAAFTNQVKNASQIEEMVKLQTAGRDANSVFYTGVSYLPIGVGQI FIIQNETVEHELVAVEVIHHSEVHGNYTCEFKAIPADVSAPYYTNVEIFAKAENQPAIVIDNNDPESLGRVKVSFYWGTG STKTEWIRVMQYYSGSSRGMYWRPEIGDEVLVSFENGNIDFPYVSGSHYNGQAKPEFFDSKNSIKGWKLRFGMLLKFVEK VGIWLSDPSGNEIHLDEENKNINATTPETFTIRAKNIVFEATESITVKAGTNILETAGINKTLQVGGIMDTQVIGSNLLH VKGDFHEQIDGDLHSETKQDRNTISHSDFTSLSQENAEFHSKNDIQNNSTEDTTQN >Mature_616_residues MFTSILITKKHVLMARFSDQVKITIDDFSKNVVYYDLGITQKMMDHHYFSFVWQHAAEAVIDPLKQAAAIRRYQGREVIF TFKSLTGIQLMAKGIITNLESYDVGGSPGGLYVKGISHTILLDDLKKARTFLDRNLQEIALDIFANETAGEFYNREAIAP TFTTIFDYKAQYNETSFNFLKRLSACYGQWLYFDGMRMQFGQLKNSKVKLINGASLHKFGIQTHLASHKTAFGAYDYNNA KQIVSSQPKTNQGSGDGFSRTALDRQASVAQPNLFVAAFTNQVKNASQIEEMVKLQTAGRDANSVFYTGVSYLPIGVGQI FIIQNETVEHELVAVEVIHHSEVHGNYTCEFKAIPADVSAPYYTNVEIFAKAENQPAIVIDNNDPESLGRVKVSFYWGTG STKTEWIRVMQYYSGSSRGMYWRPEIGDEVLVSFENGNIDFPYVSGSHYNGQAKPEFFDSKNSIKGWKLRFGMLLKFVEK VGIWLSDPSGNEIHLDEENKNINATTPETFTIRAKNIVFEATESITVKAGTNILETAGINKTLQVGGIMDTQVIGSNLLH VKGDFHEQIDGDLHSETKQDRNTISHSDFTSLSQENAEFHSKNDIQNNSTEDTTQN
Specific function: Unknown
COG id: COG3501
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 69163; Mature: 69163
Theoretical pI: Translated: 6.30; Mature: 6.30
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MFTSILITKKHVLMARFSDQVKITIDDFSKNVVYYDLGITQKMMDHHYFSFVWQHAAEAV CCCEEEEEHHHEEEEECCCCEEEEEECCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHH IDPLKQAAAIRRYQGREVIFTFKSLTGIQLMAKGIITNLESYDVGGSPGGLYVKGISHTI HHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHCCCCCCCCCCCCCEEEECCCEEE LLDDLKKARTFLDRNLQEIALDIFANETAGEFYNREAIAPTFTTIFDYKAQYNETSFNFL EHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHCCCCCCCHHHHHEECHHCCCCCHHHHH KRLSACYGQWLYFDGMRMQFGQLKNSKVKLINGASLHKFGIQTHLASHKTAFGAYDYNNA HHHHHHHCCEEEECCCHHHHCCCCCCCEEEEECCCEEHHHHHHHHHCCCCEECCCCCCCH KQIVSSQPKTNQGSGDGFSRTALDRQASVAQPNLFVAAFTNQVKNASQIEEMVKLQTAGR HHHHCCCCCCCCCCCCCCCHHHHHCCCCCCCCCEEEEEEHHHHCCHHHHHHHHHHHHCCC DANSVFYTGVSYLPIGVGQIFIIQNETVEHELVAVEVIHHSEVHGNYTCEFKAIPADVSA CCCEEEEECCEEEEECCCEEEEEECCCCCCEEEEEEEEECCCCCCCEEEEEEECCCCCCC PYYTNVEIFAKAENQPAIVIDNNDPESLGRVKVSFYWGTGSTKTEWIRVMQYYSGSSRGM CEEECEEEEEECCCCCEEEEECCCCHHCCEEEEEEEECCCCCHHHHHHHHHHHCCCCCCE YWRPEIGDEVLVSFENGNIDFPYVSGSHYNGQAKPEFFDSKNSIKGWKLRFGMLLKFVEK EECCCCCCEEEEEEECCCEECCEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH VGIWLSDPSGNEIHLDEENKNINATTPETFTIRAKNIVFEATESITVKAGTNILETAGIN CCEEEECCCCCEEEEECCCCCCCCCCCCEEEEEEEEEEEEECCCEEEECCCCEEECCCCC KTLQVGGIMDTQVIGSNLLHVKGDFHEQIDGDLHSETKQDRNTISHSDFTSLSQENAEFH CEEEECCCEEHHHHCCCEEEEECCHHHHCCCCHHHHHHHHHHCCCCCHHHHHHHCCCCCC SKNDIQNNSTEDTTQN CCCCCCCCCCCCCCCC >Mature Secondary Structure MFTSILITKKHVLMARFSDQVKITIDDFSKNVVYYDLGITQKMMDHHYFSFVWQHAAEAV CCCEEEEEHHHEEEEECCCCEEEEEECCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHH IDPLKQAAAIRRYQGREVIFTFKSLTGIQLMAKGIITNLESYDVGGSPGGLYVKGISHTI HHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHCCCCCCCCCCCCCEEEECCCEEE LLDDLKKARTFLDRNLQEIALDIFANETAGEFYNREAIAPTFTTIFDYKAQYNETSFNFL EHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHCCCCCCCHHHHHEECHHCCCCCHHHHH KRLSACYGQWLYFDGMRMQFGQLKNSKVKLINGASLHKFGIQTHLASHKTAFGAYDYNNA HHHHHHHCCEEEECCCHHHHCCCCCCCEEEEECCCEEHHHHHHHHHCCCCEECCCCCCCH KQIVSSQPKTNQGSGDGFSRTALDRQASVAQPNLFVAAFTNQVKNASQIEEMVKLQTAGR HHHHCCCCCCCCCCCCCCCHHHHHCCCCCCCCCEEEEEEHHHHCCHHHHHHHHHHHHCCC DANSVFYTGVSYLPIGVGQIFIIQNETVEHELVAVEVIHHSEVHGNYTCEFKAIPADVSA CCCEEEEECCEEEEECCCEEEEEECCCCCCEEEEEEEEECCCCCCCEEEEEEECCCCCCC PYYTNVEIFAKAENQPAIVIDNNDPESLGRVKVSFYWGTGSTKTEWIRVMQYYSGSSRGM CEEECEEEEEECCCCCEEEEECCCCHHCCEEEEEEEECCCCCHHHHHHHHHHHCCCCCCE YWRPEIGDEVLVSFENGNIDFPYVSGSHYNGQAKPEFFDSKNSIKGWKLRFGMLLKFVEK EECCCCCCEEEEEEECCCEECCEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH VGIWLSDPSGNEIHLDEENKNINATTPETFTIRAKNIVFEATESITVKAGTNILETAGIN CCEEEECCCCCEEEEECCCCCCCCCCCCEEEEEEEEEEEEECCCEEEECCCCEEECCCCC KTLQVGGIMDTQVIGSNLLHVKGDFHEQIDGDLHSETKQDRNTISHSDFTSLSQENAEFH CEEEECCCEEHHHHCCCEEEEECCHHHHCCCCHHHHHHHHHHCCCCCHHHHHHHCCCCCC SKNDIQNNSTEDTTQN CCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA