| Definition | Flavobacterium johnsoniae UW101 chromosome, complete genome. |
|---|---|
| Accession | NC_009441 |
| Length | 6,096,872 |
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The map label for this gene is 146301668
Identifier: 146301668
GI number: 146301668
Start: 4678735
End: 4680255
Strand: Reverse
Name: 146301668
Synonym: Fjoh_3930
Alternate gene names: NA
Gene position: 4680255-4678735 (Counterclockwise)
Preceding gene: 146301669
Following gene: 146301667
Centisome position: 76.76
GC content: 31.76
Gene sequence:
>1521_bases ATGTCTAGGACAAGAATTGTAAAAGGGAAAATTACTGAAATTACAGGCGGAACTTCAAGAATTTTTGCGAAGAGTATCAA AATTAATTCAGGAAGAAGCATAAATTATTATGCTAAAAATTATACTTATGGTGAGCCACAAGACCCGCCTGCATCTAAAT ATGCAGAGTTCGATATAGATTTTGAACTTAATATGGATGAGAATACTATGGTTCCCTTTGGTATTTTAGATTGTGAAAAT AACATAGAAAATCCTTACTTCAGTTTTAAATATGCCTTAAGAAATGATGATATAGATTCTTTAGGCTTTAAAATTACAGA CGAGGAAAATGAGATAATTTATCAAATGGGATATTTAAAACCTGTAATTATACAAGCCCGAAAAAAACCTTTAGTACTTT TTGAAGCAAAAAAAACAACTGAAGGACCACTTATTTCAAAAACCTGGGAATATCAAAAAATTTTTGAACCTTATGTTTTA ACTGAACCAGATTATACCAAAAAAGGTGAATATCATTTAAACTGGGATGGTTTTGATAATGATGAAATATACGACAGTAC ACGTTTTGCAGGCAAAAAATTAAAAGCAACAATTACGGCAACTAAAGGGGACATTGTAAAAGCTAAAGAAATTGAACTTG AAGTATCATATAGTGAAGTGGATTGGGTTGATATAAAAATTGACAAAACCGCAAAACGTATCGATGTTACACTAAGAGTG AACCTAACAGATGGTGGAGAAATTGGATTGACCTGCCAGACTATAAATGCAAATATGTATGGAACACCTGCAAGGACAGT TTGCGATTGGGATAAAATACCTACTCCAATAATAAACCCAAGTGATCCTATTATAAAAAGCAGGACAAGAAGCTTTTCAG ATTTAGAAAAACTTGCCTTAGATGGATTGAACTATCACTGGGGAAGAAATAAAAATCATGCAGTAGCAAAAAATGTAAAT ATTGGAAGTGATGTATTTGAACTATACATTAAAGCTGTTAATACTAAAAAATACACAATGAATGCGGTTAAGTTAACTTA CAATACAAATAGTGATTGGATGCGTTCAGGAAATCCTAGCGAAGCTAAAGATGTTGTATCCACTTTTGGAAAAGTCATAT CAGGACAGAGAATAGCATATAATATTGGATATTTGAATAATGTTGACTGGTATGAGATATCTAAACAAAATTGGTACTAT GAAGATGAAAAGAAATATAAAGTTGATGAAAATTTTTCAGATACATCAGCACATGAGATAGGTCATACAATTCTTCAAGC CTATGGTGGAACTGAATATTCTTATACTCATGCAGGCACTTCTTACATAACGCAAGAAGTTATCAAAATTAGTAATGGAG GGAAAAGCTATTTCCATGAACTGAAAACAAAGGGAGAAATTGATTTAATGTACTACTATGAGGATGAACCATGGCCAGGA AATCGTGATTATGCAAAATATGTTGCATCCGAAAAAGATGCCTTAAGTTTACTTTGGTTAACTAAAATAAAAATATCATG A
Upstream 100 bases:
>100_bases TCAAGAAAATGCTGAATTTCACTCAAAAAATGATATTCAAAATAATAGTACCGAGGATACTACACAAAATTAAAAACTAT TAAATTGAAATTAAAAGAAT
Downstream 100 bases:
>100_bases GAAGTTGTCTAATTATTTTTATGAATATCTTTTTTATATCGTGTAACAATGAATTAAAATATGGGTATGTATACGATATA AAAATGAATGTTCCAATTGA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 506; Mature: 505
Protein sequence:
>506_residues MSRTRIVKGKITEITGGTSRIFAKSIKINSGRSINYYAKNYTYGEPQDPPASKYAEFDIDFELNMDENTMVPFGILDCEN NIENPYFSFKYALRNDDIDSLGFKITDEENEIIYQMGYLKPVIIQARKKPLVLFEAKKTTEGPLISKTWEYQKIFEPYVL TEPDYTKKGEYHLNWDGFDNDEIYDSTRFAGKKLKATITATKGDIVKAKEIELEVSYSEVDWVDIKIDKTAKRIDVTLRV NLTDGGEIGLTCQTINANMYGTPARTVCDWDKIPTPIINPSDPIIKSRTRSFSDLEKLALDGLNYHWGRNKNHAVAKNVN IGSDVFELYIKAVNTKKYTMNAVKLTYNTNSDWMRSGNPSEAKDVVSTFGKVISGQRIAYNIGYLNNVDWYEISKQNWYY EDEKKYKVDENFSDTSAHEIGHTILQAYGGTEYSYTHAGTSYITQEVIKISNGGKSYFHELKTKGEIDLMYYYEDEPWPG NRDYAKYVASEKDALSLLWLTKIKIS
Sequences:
>Translated_506_residues MSRTRIVKGKITEITGGTSRIFAKSIKINSGRSINYYAKNYTYGEPQDPPASKYAEFDIDFELNMDENTMVPFGILDCEN NIENPYFSFKYALRNDDIDSLGFKITDEENEIIYQMGYLKPVIIQARKKPLVLFEAKKTTEGPLISKTWEYQKIFEPYVL TEPDYTKKGEYHLNWDGFDNDEIYDSTRFAGKKLKATITATKGDIVKAKEIELEVSYSEVDWVDIKIDKTAKRIDVTLRV NLTDGGEIGLTCQTINANMYGTPARTVCDWDKIPTPIINPSDPIIKSRTRSFSDLEKLALDGLNYHWGRNKNHAVAKNVN IGSDVFELYIKAVNTKKYTMNAVKLTYNTNSDWMRSGNPSEAKDVVSTFGKVISGQRIAYNIGYLNNVDWYEISKQNWYY EDEKKYKVDENFSDTSAHEIGHTILQAYGGTEYSYTHAGTSYITQEVIKISNGGKSYFHELKTKGEIDLMYYYEDEPWPG NRDYAKYVASEKDALSLLWLTKIKIS >Mature_505_residues SRTRIVKGKITEITGGTSRIFAKSIKINSGRSINYYAKNYTYGEPQDPPASKYAEFDIDFELNMDENTMVPFGILDCENN IENPYFSFKYALRNDDIDSLGFKITDEENEIIYQMGYLKPVIIQARKKPLVLFEAKKTTEGPLISKTWEYQKIFEPYVLT EPDYTKKGEYHLNWDGFDNDEIYDSTRFAGKKLKATITATKGDIVKAKEIELEVSYSEVDWVDIKIDKTAKRIDVTLRVN LTDGGEIGLTCQTINANMYGTPARTVCDWDKIPTPIINPSDPIIKSRTRSFSDLEKLALDGLNYHWGRNKNHAVAKNVNI GSDVFELYIKAVNTKKYTMNAVKLTYNTNSDWMRSGNPSEAKDVVSTFGKVISGQRIAYNIGYLNNVDWYEISKQNWYYE DEKKYKVDENFSDTSAHEIGHTILQAYGGTEYSYTHAGTSYITQEVIKISNGGKSYFHELKTKGEIDLMYYYEDEPWPGN RDYAKYVASEKDALSLLWLTKIKIS
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 58035; Mature: 57904
Theoretical pI: Translated: 5.61; Mature: 5.61
Prosite motif: PS00142 ZINC_PROTEASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSRTRIVKGKITEITGGTSRIFAKSIKINSGRSINYYAKNYTYGEPQDPPASKYAEFDID CCCCEEEECEEEEECCCCCEEEEEEEEECCCCEEEEEEECCCCCCCCCCCCCCCEEEEEE FELNMDENTMVPFGILDCENNIENPYFSFKYALRNDDIDSLGFKITDEENEIIYQMGYLK EEECCCCCCCCEEEEEECCCCCCCCEEEEEEEECCCCHHHCCEEEECCCCCEEEEECCCC PVIIQARKKPLVLFEAKKTTEGPLISKTWEYQKIFEPYVLTEPDYTKKGEYHLNWDGFDN EEEEECCCCCEEEEEECCCCCCCCCCCCCCHHHHCCCEEECCCCCCCCCCEEEECCCCCC DEIYDSTRFAGKKLKATITATKGDIVKAKEIELEVSYSEVDWVDIKIDKTAKRIDVTLRV CCCCCCHHHCCCEEEEEEEECCCCEEEEEEEEEEEEECCEEEEEEEECCCCEEEEEEEEE NLTDGGEIGLTCQTINANMYGTPARTVCDWDKIPTPIINPSDPIIKSRTRSFSDLEKLAL EECCCCCEEEEEEEECCCCCCCCCCCEECCCCCCCCCCCCCCCHHHHHCCCHHHHHHHHH DGLNYHWGRNKNHAVAKNVNIGSDVFELYIKAVNTKKYTMNAVKLTYNTNSDWMRSGNPS CCCCCCCCCCCCCEEEECCCCCHHHHHHHHHHCCCCEEEEEEEEEEEECCCCHHCCCCCH EAKDVVSTFGKVISGQRIAYNIGYLNNVDWYEISKQNWYYEDEKKYKVDENFSDTSAHEI HHHHHHHHHHHHHCCCEEEEEECCCCCCCEEEECCCCCEECCCCCEECCCCCCCCHHHHH GHTILQAYGGTEYSYTHAGTSYITQEVIKISNGGKSYFHELKTKGEIDLMYYYEDEPWPG HHHHHHHHCCCCEEEECCCHHHHHHHHHEECCCCHHHHHHHCCCCCEEEEEEECCCCCCC NRDYAKYVASEKDALSLLWLTKIKIS CCHHHHHHCCCCCCEEEEEEEEEEEC >Mature Secondary Structure SRTRIVKGKITEITGGTSRIFAKSIKINSGRSINYYAKNYTYGEPQDPPASKYAEFDID CCCEEEECEEEEECCCCCEEEEEEEEECCCCEEEEEEECCCCCCCCCCCCCCCEEEEEE FELNMDENTMVPFGILDCENNIENPYFSFKYALRNDDIDSLGFKITDEENEIIYQMGYLK EEECCCCCCCCEEEEEECCCCCCCCEEEEEEEECCCCHHHCCEEEECCCCCEEEEECCCC PVIIQARKKPLVLFEAKKTTEGPLISKTWEYQKIFEPYVLTEPDYTKKGEYHLNWDGFDN EEEEECCCCCEEEEEECCCCCCCCCCCCCCHHHHCCCEEECCCCCCCCCCEEEECCCCCC DEIYDSTRFAGKKLKATITATKGDIVKAKEIELEVSYSEVDWVDIKIDKTAKRIDVTLRV CCCCCCHHHCCCEEEEEEEECCCCEEEEEEEEEEEEECCEEEEEEEECCCCEEEEEEEEE NLTDGGEIGLTCQTINANMYGTPARTVCDWDKIPTPIINPSDPIIKSRTRSFSDLEKLAL EECCCCCEEEEEEEECCCCCCCCCCCEECCCCCCCCCCCCCCCHHHHHCCCHHHHHHHHH DGLNYHWGRNKNHAVAKNVNIGSDVFELYIKAVNTKKYTMNAVKLTYNTNSDWMRSGNPS CCCCCCCCCCCCCEEEECCCCCHHHHHHHHHHCCCCEEEEEEEEEEEECCCCHHCCCCCH EAKDVVSTFGKVISGQRIAYNIGYLNNVDWYEISKQNWYYEDEKKYKVDENFSDTSAHEI HHHHHHHHHHHHHCCCEEEEEECCCCCCCEEEECCCCCEECCCCCEECCCCCCCCHHHHH GHTILQAYGGTEYSYTHAGTSYITQEVIKISNGGKSYFHELKTKGEIDLMYYYEDEPWPG HHHHHHHHCCCCEEEECCCHHHHHHHHHEECCCCHHHHHHHCCCCCEEEEEEECCCCCCC NRDYAKYVASEKDALSLLWLTKIKIS CCHHHHHHCCCCCCEEEEEEEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA