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The map label for this gene is sdhB [H]

Identifier: 146301070

GI number: 146301070

Start: 3975635

End: 3976381

Strand: Direct

Name: sdhB [H]

Synonym: Fjoh_3326

Alternate gene names: 146301070

Gene position: 3975635-3976381 (Clockwise)

Preceding gene: 146301069

Following gene: 146301072

Centisome position: 65.21

GC content: 40.56

Gene sequence:

>747_bases
ATGAAACTCTTTCTAAAAATATGGCGTCAGTTTGATACTTCTTCTAAAGGAGAAATGGTAGATTATGAATTAGACGGTGT
TTCAGAACACATGTCTTTTCTCGAAATGCTGGATCTTTTAAACGAATCTTTAATTCAGAAAAAAGAACGTGTAATTGAAT
TCGATCACGACTGCCGTGAAGGAATCTGCGGTCAATGCGGCGTTATGATTAACGGAAGAGCCCACGGACCTTTAAAAAAC
ACTACAACCTGCCAGCTTCACATGAGAAGTTTTAAAGACGGCGAAACGATTTATATTGAACCTTTTAGAGCAAAAGCATT
TCCGGTTTTACGAGATTTAAAAATCGATCGAAGCGCTTTTGATGCCATTATCCGTTCCGGCGGTTTTATTGGCGCTTCAA
CCGGACAGGCGCCAGAAGCCAACAGTATTCCAATATCTTTTGAAACTGCTGAAGCTTCTTTTGATGCCGCCGCCTGCATT
GGATGCGGTGCGTGTGTAGCTTCTTGCAAAAATGCAAGTGCAGCTTTATTTGTCGGGGCTAAAATAACGCATTTGGCTTT
GCTTCCTCAGGGAAAAGTCGAAGCTTCAAAAAGAGCTATTACGATGGTAAAACAAATGGATGCAGAAGGTTTTGGGAATT
GTTCTGATACAAGAGCCTGCGAAATCGAATGCCCGCAGGGAATTTCGGTGCTTTCAATTGCTAAAATGAATTTAGAATAC
ATGAAAGCTTTGACTTTTAGAAAGTAA

Upstream 100 bases:

>100_bases
TGGTGAATGGTGAATTGTAAATTATTAATTAACAATCCACAAGTTCAATTTAAAACCCACCAGTAATTCATAATTAACAA
TTTATAATTAATAATTAGCT

Downstream 100 bases:

>100_bases
TTATGAAGTTAAAAAATGAATTTCTCGCAAAGACGCAGAGCCGCAAAGTTTTAAAACTTAAAAAAGAAGATCTTTGCGAA
TCTGCGTCTTTGCGAGATAA

Product: succinate dehydrogenase/fumarate reductase iron-sulfur subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 248; Mature: 248

Protein sequence:

>248_residues
MKLFLKIWRQFDTSSKGEMVDYELDGVSEHMSFLEMLDLLNESLIQKKERVIEFDHDCREGICGQCGVMINGRAHGPLKN
TTTCQLHMRSFKDGETIYIEPFRAKAFPVLRDLKIDRSAFDAIIRSGGFIGASTGQAPEANSIPISFETAEASFDAAACI
GCGACVASCKNASAALFVGAKITHLALLPQGKVEASKRAITMVKQMDAEGFGNCSDTRACEIECPQGISVLSIAKMNLEY
MKALTFRK

Sequences:

>Translated_248_residues
MKLFLKIWRQFDTSSKGEMVDYELDGVSEHMSFLEMLDLLNESLIQKKERVIEFDHDCREGICGQCGVMINGRAHGPLKN
TTTCQLHMRSFKDGETIYIEPFRAKAFPVLRDLKIDRSAFDAIIRSGGFIGASTGQAPEANSIPISFETAEASFDAAACI
GCGACVASCKNASAALFVGAKITHLALLPQGKVEASKRAITMVKQMDAEGFGNCSDTRACEIECPQGISVLSIAKMNLEY
MKALTFRK
>Mature_248_residues
MKLFLKIWRQFDTSSKGEMVDYELDGVSEHMSFLEMLDLLNESLIQKKERVIEFDHDCREGICGQCGVMINGRAHGPLKN
TTTCQLHMRSFKDGETIYIEPFRAKAFPVLRDLKIDRSAFDAIIRSGGFIGASTGQAPEANSIPISFETAEASFDAAACI
GCGACVASCKNASAALFVGAKITHLALLPQGKVEASKRAITMVKQMDAEGFGNCSDTRACEIECPQGISVLSIAKMNLEY
MKALTFRK

Specific function: Two Distinct, Membrane-Bound, FAD-Containing Enzymes Are Responsible For The Catalysis Of Fumarate And Succinate Interconversion; The Fumarate Reductase Is Used In Anaerobic Growth, And The Succinate Dehydrogenase Is Used In Aerobic Growth. [C]

COG id: COG0479

COG function: function code C; Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 4Fe-4S ferredoxin-type domain [H]

Homologues:

None

Paralogues:

None

Copy number: 480 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017896
- InterPro:   IPR017900
- InterPro:   IPR012675
- InterPro:   IPR001041
- InterPro:   IPR012285
- InterPro:   IPR009051
- InterPro:   IPR004489 [H]

Pfam domain/function: NA

EC number: =1.3.99.1 [H]

Molecular weight: Translated: 27167; Mature: 27167

Theoretical pI: Translated: 6.64; Mature: 6.64

Prosite motif: PS00197 2FE2S_FER_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

4.4 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
8.5 %Cys+Met (Translated Protein)
4.4 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
8.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLFLKIWRQFDTSSKGEMVDYELDGVSEHMSFLEMLDLLNESLIQKKERVIEFDHDCRE
CHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHC
GICGQCGVMINGRAHGPLKNTTTCQLHMRSFKDGETIYIEPFRAKAFPVLRDLKIDRSAF
CCCCCCCEEEECCCCCCCCCCEEEEEEECCCCCCCEEEEECCCCCCCHHHHHHCCCHHHH
DAIIRSGGFIGASTGQAPEANSIPISFETAEASFDAAACIGCGACVASCKNASAALFVGA
HHHHHCCCEEECCCCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHCCCCCEEEEECC
KITHLALLPQGKVEASKRAITMVKQMDAEGFGNCSDTRACEIECPQGISVLSIAKMNLEY
CEEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCEEHHHHHHHHH
MKALTFRK
HHHHHCCC
>Mature Secondary Structure
MKLFLKIWRQFDTSSKGEMVDYELDGVSEHMSFLEMLDLLNESLIQKKERVIEFDHDCRE
CHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHC
GICGQCGVMINGRAHGPLKNTTTCQLHMRSFKDGETIYIEPFRAKAFPVLRDLKIDRSAF
CCCCCCCEEEECCCCCCCCCCEEEEEEECCCCCCCEEEEECCCCCCCHHHHHHCCCHHHH
DAIIRSGGFIGASTGQAPEANSIPISFETAEASFDAAACIGCGACVASCKNASAALFVGA
HHHHHCCCEEECCCCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHCCCCCEEEEECC
KITHLALLPQGKVEASKRAITMVKQMDAEGFGNCSDTRACEIECPQGISVLSIAKMNLEY
CEEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCEEHHHHHHHHH
MKALTFRK
HHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 3027051; 8969504; 9384377; 3114423 [H]