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The map label for this gene is 146301048

Identifier: 146301048

GI number: 146301048

Start: 3948009

End: 3948788

Strand: Reverse

Name: 146301048

Synonym: Fjoh_3304

Alternate gene names: NA

Gene position: 3948788-3948009 (Counterclockwise)

Preceding gene: 146301049

Following gene: 146301043

Centisome position: 64.77

GC content: 34.62

Gene sequence:

>780_bases
ATGAGATCGATATGGACAGGTTCAGTGAGTTTTGGGTTAATTAATATTCCAATAAAAATGTTTTCGGCAGTTCAGGAAAG
CAGTCTTGATATGGATATGCTGGATAAAAAAGACAATGCAAACATTAAGTTTAAACGTGTCAATGAAAATACAGGCAAAG
AAGTCGATTTTGCCAATATTGTAAAAGGGTACATGCTGAATGATAAATATGTAATCCTAGACGATTCTGATTTTGAAGCG
GCAGATGCCATTAAAACCAAGACAATTGATATTGAAAGTTTTGTTTTAGAAAAAGAAATTGAAAGTATTTATTACGAACA
GCCGTATTATCTAGAACCAGACAAAGGCGCAATGAATGCCTACGGACTGCTTCGTGATGCACTGCAAGCTTCCGGAAAAG
TAGGAGTTACGCGTTTTGTTTTGCGAAACAAAGAAAGCCTTGCCATTTTAAAACCGTACAAAAATGTGATTGTATTAAAC
CGAATTCGATTTGAACAGGAAATACGAAGCACCGATGAATTAAACCTGCCTCCGATTTCTAAAAAAGCAACAAAAGAAAT
GGATATGGCCGAAAAACTAATCGACCAGCTTACTGAAAAGTTTGATATTACAGGTTTTAAAGACGAATATACAACCAAAC
TTTTGGATATTATTAAAAAGAAAGCCAAAGGGAAAGTTCAAAAAACGGCTCCTAAAATGAAAGTGGTTCATAAACAAGGC
GACGATTTAATGTCAATGTTAAAAGCCAGTTTAGAGACTAAGAAGAAAAAATCTTCTTAG

Upstream 100 bases:

>100_bases
GTTGATTTTGAGTTTGTATTTTATAAAACATTCCTATGATAGTATAAAGCAATATTGATTGATGTGATTTACTTTTAAGT
GAAATTTAAAGGAAAAAATT

Downstream 100 bases:

>100_bases
TCTTAGATTTTAATTTTCCAGTTGTTTTTCCTCTAATTTCTTGATAATCTTTTTGATATTGGCACCTTTTGACAAAACAG
GTTTCCATAAATCACCCTTT

Product: Ku domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 259; Mature: 259

Protein sequence:

>259_residues
MRSIWTGSVSFGLINIPIKMFSAVQESSLDMDMLDKKDNANIKFKRVNENTGKEVDFANIVKGYMLNDKYVILDDSDFEA
ADAIKTKTIDIESFVLEKEIESIYYEQPYYLEPDKGAMNAYGLLRDALQASGKVGVTRFVLRNKESLAILKPYKNVIVLN
RIRFEQEIRSTDELNLPPISKKATKEMDMAEKLIDQLTEKFDITGFKDEYTTKLLDIIKKKAKGKVQKTAPKMKVVHKQG
DDLMSMLKASLETKKKKSS

Sequences:

>Translated_259_residues
MRSIWTGSVSFGLINIPIKMFSAVQESSLDMDMLDKKDNANIKFKRVNENTGKEVDFANIVKGYMLNDKYVILDDSDFEA
ADAIKTKTIDIESFVLEKEIESIYYEQPYYLEPDKGAMNAYGLLRDALQASGKVGVTRFVLRNKESLAILKPYKNVIVLN
RIRFEQEIRSTDELNLPPISKKATKEMDMAEKLIDQLTEKFDITGFKDEYTTKLLDIIKKKAKGKVQKTAPKMKVVHKQG
DDLMSMLKASLETKKKKSS
>Mature_259_residues
MRSIWTGSVSFGLINIPIKMFSAVQESSLDMDMLDKKDNANIKFKRVNENTGKEVDFANIVKGYMLNDKYVILDDSDFEA
ADAIKTKTIDIESFVLEKEIESIYYEQPYYLEPDKGAMNAYGLLRDALQASGKVGVTRFVLRNKESLAILKPYKNVIVLN
RIRFEQEIRSTDELNLPPISKKATKEMDMAEKLIDQLTEKFDITGFKDEYTTKLLDIIKKKAKGKVQKTAPKMKVVHKQG
DDLMSMLKASLETKKKKSS

Specific function: Could be involved in DNA repair

COG id: COG1273

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Ku domain

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y3304_FLAJ1 (A5FEP6)

Other databases:

- EMBL:   CP000685
- RefSeq:   YP_001195639.1
- ProteinModelPortal:   A5FEP6
- STRING:   A5FEP6
- GeneID:   5093022
- GenomeReviews:   CP000685_GR
- KEGG:   fjo:Fjoh_3304
- eggNOG:   COG1273
- HOGENOM:   HBG492008
- OMA:   EAKGYAR
- BioCyc:   FJOH376686:FJOH_3304-MONOMER
- HAMAP:   MF_01875
- InterPro:   IPR006164
- InterPro:   IPR009187
- InterPro:   IPR016194
- PIRSF:   PIRSF006493
- TIGRFAMs:   TIGR02772

Pfam domain/function: PF02735 Ku; SSF100939 SPOC-like

EC number: NA

Molecular weight: Translated: 29559; Mature: 29559

Theoretical pI: Translated: 9.57; Mature: 9.57

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRSIWTGSVSFGLINIPIKMFSAVQESSLDMDMLDKKDNANIKFKRVNENTGKEVDFANI
CCCEECCCCEEEEEEHHHHHHHHHHHHCCCHHHHCCCCCCCEEEEECCCCCCCCCCHHHH
VKGYMLNDKYVILDDSDFEAADAIKTKTIDIESFVLEKEIESIYYEQPYYLEPDKGAMNA
HHHEEECCCEEEEECCCCCHHHHHHHEEECHHHHHHHHHHHHHHCCCCEEECCCCCCHHH
YGLLRDALQASGKVGVTRFVLRNKESLAILKPYKNVIVLNRIRFEQEIRSTDELNLPPIS
HHHHHHHHHCCCCCCHHHHHHCCCCCEEEECCCCCEEEHHHHHHHHHHCCCCCCCCCCCC
KKATKEMDMAEKLIDQLTEKFDITGFKDEYTTKLLDIIKKKAKGKVQKTAPKMKVVHKQG
HHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCHHHHCCHHHHHHCCC
DDLMSMLKASLETKKKKSS
HHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MRSIWTGSVSFGLINIPIKMFSAVQESSLDMDMLDKKDNANIKFKRVNENTGKEVDFANI
CCCEECCCCEEEEEEHHHHHHHHHHHHCCCHHHHCCCCCCCEEEEECCCCCCCCCCHHHH
VKGYMLNDKYVILDDSDFEAADAIKTKTIDIESFVLEKEIESIYYEQPYYLEPDKGAMNA
HHHEEECCCEEEEECCCCCHHHHHHHEEECHHHHHHHHHHHHHHCCCCEEECCCCCCHHH
YGLLRDALQASGKVGVTRFVLRNKESLAILKPYKNVIVLNRIRFEQEIRSTDELNLPPIS
HHHHHHHHHCCCCCCHHHHHHCCCCCEEEECCCCCEEEHHHHHHHHHHCCCCCCCCCCCC
KKATKEMDMAEKLIDQLTEKFDITGFKDEYTTKLLDIIKKKAKGKVQKTAPKMKVVHKQG
HHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCHHHHCCHHHHHHCCC
DDLMSMLKASLETKKKKSS
HHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA