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The map label for this gene is ysdC [H]

Identifier: 146300486

GI number: 146300486

Start: 3261103

End: 3262191

Strand: Reverse

Name: ysdC [H]

Synonym: Fjoh_2736

Alternate gene names: 146300486

Gene position: 3262191-3261103 (Counterclockwise)

Preceding gene: 146300490

Following gene: 146300485

Centisome position: 53.51

GC content: 34.53

Gene sequence:

>1089_bases
ATGAGTACAAAATCTATCTTAAATGATACCTCTATAGCTTTTTTAGAAAGCTATCTAAATAATGCTTCGCCGACTGGTTA
CGAAAGTGAAGGGCAAAAACTTTGGATGAATTATTTAAAACCTTATGTAGATACTTTTATCACTGATACATATGGTACAG
CGGTTGGAGTTATTAATCCTGATGCTCCTTTTAAGGTTGTTATTGAAGGTCATGCTGATGAAATTTCATGGTATGTAAAC
TATATTACAGATGATGGTTTATTATATGTAATTAGAAACGGTGGATCTGATCACCAGATTGCACCTTCAAAAAGAGTAAA
TATTCATACCAAAAAAGGGATCGTAAAGGGTGTCTTTGGATGGCCTGCAATTCATACACGTTTAAGAGACAAGGAAGAAA
TCCCAAAATTAAGCAACATATTTATTGATTTAGGATGCGAAACTAAGGAACAAGTTGAAGCAATGGGAGTTCATGTAGGC
TGTGTAATTACCTATCCTGATGAATTTATGATTTTGAATGAAAACAAATTTGTGTGCCGTGCGATAGACAACAGAATGGG
CGGTTTTATGATTGCCGAAGTTGCTCGTTTATTAAAGGAAAACAAAAAAACACTTCCTTTTGGTTTGTATATAGTAAATT
CTGTTCAGGAAGAAATTGGTCTTCGCGGTGCAGAAATGATCGCTCATACAATTAAACCAAATGTTGCTATTGTTACTGAT
GTCTGTCACGATACCACTACTCCTATGATTGATAAAAAAGTCGAAGGTGATTTAAAAATGGGTAAAGGACCAGTTATTGC
ATATTCGCCGGCAATCCAAAATAAACTTCGCGATTTAATTGTAGACATTGCAGAAGAAAAGAAAATACCTTTCCAGCGTC
ATGCTACTTCTCGTGCAACGGGTACAGATACTGATGCTTTTGCATATAGCAATGGTGGTGTAGCTTCAGCATTAATTTCT
CTTCCTTTAAGATACATGCATACTACTGTAGAAATGGTGCATAGAGATGATGTTGAAAATGTAATTCAATTGATTTATGA
GTCCTTATTGAAAATTGAGAATAACGAAACATTCTCTTATTTCAAATAA

Upstream 100 bases:

>100_bases
TACAGCAGGTAAATCTCATGGAGTCTTAATTTAGATGTAAAATTATATATTTATACACAACTCTGATACCAAATTTATAA
ATTAGCGCAAAAATATTTTT

Downstream 100 bases:

>100_bases
AAGCACTTTCATACTAAATTCGGCTGTTTATAAAATAATAGCCGAATTTACTAATTCCTCAAAGAATGAAAATATTACTG
CTCGAAGACGATTTTACTTT

Product: peptidase M42 family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 362; Mature: 361

Protein sequence:

>362_residues
MSTKSILNDTSIAFLESYLNNASPTGYESEGQKLWMNYLKPYVDTFITDTYGTAVGVINPDAPFKVVIEGHADEISWYVN
YITDDGLLYVIRNGGSDHQIAPSKRVNIHTKKGIVKGVFGWPAIHTRLRDKEEIPKLSNIFIDLGCETKEQVEAMGVHVG
CVITYPDEFMILNENKFVCRAIDNRMGGFMIAEVARLLKENKKTLPFGLYIVNSVQEEIGLRGAEMIAHTIKPNVAIVTD
VCHDTTTPMIDKKVEGDLKMGKGPVIAYSPAIQNKLRDLIVDIAEEKKIPFQRHATSRATGTDTDAFAYSNGGVASALIS
LPLRYMHTTVEMVHRDDVENVIQLIYESLLKIENNETFSYFK

Sequences:

>Translated_362_residues
MSTKSILNDTSIAFLESYLNNASPTGYESEGQKLWMNYLKPYVDTFITDTYGTAVGVINPDAPFKVVIEGHADEISWYVN
YITDDGLLYVIRNGGSDHQIAPSKRVNIHTKKGIVKGVFGWPAIHTRLRDKEEIPKLSNIFIDLGCETKEQVEAMGVHVG
CVITYPDEFMILNENKFVCRAIDNRMGGFMIAEVARLLKENKKTLPFGLYIVNSVQEEIGLRGAEMIAHTIKPNVAIVTD
VCHDTTTPMIDKKVEGDLKMGKGPVIAYSPAIQNKLRDLIVDIAEEKKIPFQRHATSRATGTDTDAFAYSNGGVASALIS
LPLRYMHTTVEMVHRDDVENVIQLIYESLLKIENNETFSYFK
>Mature_361_residues
STKSILNDTSIAFLESYLNNASPTGYESEGQKLWMNYLKPYVDTFITDTYGTAVGVINPDAPFKVVIEGHADEISWYVNY
ITDDGLLYVIRNGGSDHQIAPSKRVNIHTKKGIVKGVFGWPAIHTRLRDKEEIPKLSNIFIDLGCETKEQVEAMGVHVGC
VITYPDEFMILNENKFVCRAIDNRMGGFMIAEVARLLKENKKTLPFGLYIVNSVQEEIGLRGAEMIAHTIKPNVAIVTDV
CHDTTTPMIDKKVEGDLKMGKGPVIAYSPAIQNKLRDLIVDIAEEKKIPFQRHATSRATGTDTDAFAYSNGGVASALISL
PLRYMHTTVEMVHRDDVENVIQLIYESLLKIENNETFSYFK

Specific function: Putative aminopeptidase [H]

COG id: COG1363

COG function: function code G; Cellulase M and related proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M42 family [H]

Homologues:

Organism=Escherichia coli, GI1790332, Length=361, Percent_Identity=32.409972299169, Blast_Score=165, Evalue=4e-42,
Organism=Escherichia coli, GI87082417, Length=351, Percent_Identity=25.0712250712251, Blast_Score=108, Evalue=4e-25,
Organism=Escherichia coli, GI1788727, Length=312, Percent_Identity=24.3589743589744, Blast_Score=88, Evalue=8e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008007 [H]

Pfam domain/function: PF05343 Peptidase_M42 [H]

EC number: NA

Molecular weight: Translated: 40503; Mature: 40372

Theoretical pI: Translated: 5.82; Mature: 5.82

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTKSILNDTSIAFLESYLNNASPTGYESEGQKLWMNYLKPYVDTFITDTYGTAVGVINP
CCCHHHHCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEECC
DAPFKVVIEGHADEISWYVNYITDDGLLYVIRNGGSDHQIAPSKRVNIHTKKGIVKGVFG
CCCEEEEEECCCCCEEEEEEEEECCCEEEEEECCCCCCCCCCCCCEEEEECCCCHHHHCC
WPAIHTRLRDKEEIPKLSNIFIDLGCETKEQVEAMGVHVGCVITYPDEFMILNENKFVCR
CHHHHHHHCCHHHCCCHHCEEEEECCCCHHHHHHHCEEEEEEEECCCCEEEECCCCEEEE
AIDNRMGGFMIAEVARLLKENKKTLPFGLYIVNSVQEEIGLRGAEMIAHTIKPNVAIVTD
EHHCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHCCCCEEEEEE
VCHDTTTPMIDKKVEGDLKMGKGPVIAYSPAIQNKLRDLIVDIAEEKKIPFQRHATSRAT
CCCCCCCCCCCCCCCCCCCCCCCCEEEECHHHHHHHHHHHHHHHHHCCCCHHHCCCCCCC
GTDTDAFAYSNGGVASALISLPLRYMHTTVEMVHRDDVENVIQLIYESLLKIENNETFSY
CCCCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCC
FK
CC
>Mature Secondary Structure 
STKSILNDTSIAFLESYLNNASPTGYESEGQKLWMNYLKPYVDTFITDTYGTAVGVINP
CCHHHHCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEECC
DAPFKVVIEGHADEISWYVNYITDDGLLYVIRNGGSDHQIAPSKRVNIHTKKGIVKGVFG
CCCEEEEEECCCCCEEEEEEEEECCCEEEEEECCCCCCCCCCCCCEEEEECCCCHHHHCC
WPAIHTRLRDKEEIPKLSNIFIDLGCETKEQVEAMGVHVGCVITYPDEFMILNENKFVCR
CHHHHHHHCCHHHCCCHHCEEEEECCCCHHHHHHHCEEEEEEEECCCCEEEECCCCEEEE
AIDNRMGGFMIAEVARLLKENKKTLPFGLYIVNSVQEEIGLRGAEMIAHTIKPNVAIVTD
EHHCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHCCCCEEEEEE
VCHDTTTPMIDKKVEGDLKMGKGPVIAYSPAIQNKLRDLIVDIAEEKKIPFQRHATSRAT
CCCCCCCCCCCCCCCCCCCCCCCCEEEECHHHHHHHHHHHHHHHHHCCCCHHHCCCCCCC
GTDTDAFAYSNGGVASALISLPLRYMHTTVEMVHRDDVENVIQLIYESLLKIENNETFSY
CCCCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCC
FK
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8969504; 9384377 [H]