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The map label for this gene is yrdC [H]

Identifier: 146300285

GI number: 146300285

Start: 3012944

End: 3013516

Strand: Direct

Name: yrdC [H]

Synonym: Fjoh_2530

Alternate gene names: 146300285

Gene position: 3012944-3013516 (Clockwise)

Preceding gene: 146300284

Following gene: 146300287

Centisome position: 49.42

GC content: 32.29

Gene sequence:

>573_bases
ATGGCACTTTCAAAAACAAACAATCCGGCATTAATTTTAATCGATATTCAAAAAGGATTTGATGATATTGATTATTGGGG
CGGACAGAGAAATAATGTAAATGCAGAAGAAAACGCTGCTGAAATTTTAAATCTGTGGAGACAAAATAATCTGCCAGTTT
TTCATATTCAGCATTGTTCTTCAAATCCAAATTCTTTGCTCAACGAAAATAATGCGGGGAATGAGTTTAAAGATGTGGTA
AAACCAAATGAAGGAGAAATCGTTATTAAAAAGAATGTAAACAGCGCTTTTATAGGTACAAATTTAAAAGAAAAATTGGA
TAATGCTAAAATAACGACATTGGTAATTGTAGGTTTAACAACAGATCACTGTGTGTCGACAACAACAAGAATGGCAGGAA
ATTTTGGTTTTGATACTTTTATCGTTTCAGATGCGACAGCAACCTTTAATAAAAAAGGAGTGGACGGACAGAATTTTTCG
GCAGAACTAATTCATGAAACCGCTTTGGCAAGTTTAAACAATGAATTTGCAGCTGTTGTAACAACTGATTTTGTAAAACA
AAATATCAAATAA

Upstream 100 bases:

>100_bases
GTTTTAAAAATTAAATAATTAAAATTTCGAAATGTAAATAATACCCAAGGACTTAGTTTGTAAATAACTGAGTCCTTTTT
TAATTTTAACCAAAAAGAAT

Downstream 100 bases:

>100_bases
AAACAAAGAAAATAAAAGAATTAAAAGCCTTAATCGTTCTTTACGGCTTTTAATTCTTTTGTTATTTTTAAAATTTTCTC
GGCAAGATTGCTCATCCAGA

Product: isochorismatase hydrolase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 190; Mature: 189

Protein sequence:

>190_residues
MALSKTNNPALILIDIQKGFDDIDYWGGQRNNVNAEENAAEILNLWRQNNLPVFHIQHCSSNPNSLLNENNAGNEFKDVV
KPNEGEIVIKKNVNSAFIGTNLKEKLDNAKITTLVIVGLTTDHCVSTTTRMAGNFGFDTFIVSDATATFNKKGVDGQNFS
AELIHETALASLNNEFAAVVTTDFVKQNIK

Sequences:

>Translated_190_residues
MALSKTNNPALILIDIQKGFDDIDYWGGQRNNVNAEENAAEILNLWRQNNLPVFHIQHCSSNPNSLLNENNAGNEFKDVV
KPNEGEIVIKKNVNSAFIGTNLKEKLDNAKITTLVIVGLTTDHCVSTTTRMAGNFGFDTFIVSDATATFNKKGVDGQNFS
AELIHETALASLNNEFAAVVTTDFVKQNIK
>Mature_189_residues
ALSKTNNPALILIDIQKGFDDIDYWGGQRNNVNAEENAAEILNLWRQNNLPVFHIQHCSSNPNSLLNENNAGNEFKDVVK
PNEGEIVIKKNVNSAFIGTNLKEKLDNAKITTLVIVGLTTDHCVSTTTRMAGNFGFDTFIVSDATATFNKKGVDGQNFSA
ELIHETALASLNNEFAAVVTTDFVKQNIK

Specific function: Unknown

COG id: COG1335

COG function: function code Q; Amidases related to nicotinamidase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the isochorismatase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000868 [H]

Pfam domain/function: PF00857 Isochorismatase [H]

EC number: NA

Molecular weight: Translated: 20870; Mature: 20738

Theoretical pI: Translated: 4.99; Mature: 4.99

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MALSKTNNPALILIDIQKGFDDIDYWGGQRNNVNAEENAAEILNLWRQNNLPVFHIQHCS
CCCCCCCCCEEEEEECCCCCCCHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECC
SNPNSLLNENNAGNEFKDVVKPNEGEIVIKKNVNSAFIGTNLKEKLDNAKITTLVIVGLT
CCCHHHHCCCCCCCHHHHHCCCCCCCEEEEECCCCEEECCCHHHHHCCCEEEEEEEEECC
TDHCVSTTTRMAGNFGFDTFIVSDATATFNKKGVDGQNFSAELIHETALASLNNEFAAVV
CCHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEE
TTDFVKQNIK
EHHHHHHCCC
>Mature Secondary Structure 
ALSKTNNPALILIDIQKGFDDIDYWGGQRNNVNAEENAAEILNLWRQNNLPVFHIQHCS
CCCCCCCCEEEEEECCCCCCCHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECC
SNPNSLLNENNAGNEFKDVVKPNEGEIVIKKNVNSAFIGTNLKEKLDNAKITTLVIVGLT
CCCHHHHCCCCCCCHHHHHCCCCCCCEEEEECCCCEEECCCHHHHHCCCEEEEEEEEECC
TDHCVSTTTRMAGNFGFDTFIVSDATATFNKKGVDGQNFSAELIHETALASLNNEFAAVV
CCHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEE
TTDFVKQNIK
EHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9308178; 9384377; 9287000 [H]