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The map label for this gene is yfjP [H]

Identifier: 146299237

GI number: 146299237

Start: 1692672

End: 1693271

Strand: Direct

Name: yfjP [H]

Synonym: Fjoh_1477

Alternate gene names: 146299237

Gene position: 1692672-1693271 (Clockwise)

Preceding gene: 146299236

Following gene: 146299238

Centisome position: 27.76

GC content: 34.17

Gene sequence:

>600_bases
ATGCAGGAAGCTATCGATTTTCTAACCAATAAAAATCCAATCTTTCGGGAGATAATCGAAAAATATGGATTGCCGCCCAT
TCCAAAACGGCCTCAGGGGTTTGAAACTTTGGTGTTATTAATTTTGGAACAGCAGGTTTCTATAGATTCGGCGAAAGCCA
CATTCTTAAAAATAAAAGAATATACAACCTGCAATCCTGAAACGATGGTCATTTTACCTGATGAAGAATATCGAAATCTT
GGAGTGAGCCGTCAAAAAACAAAATACATTAAAATTTTAGCCGAAGCAATTTTGAACAAAGAGTTAGATGTTGAAAGTTT
AGCTTCAAAACCAGCAAAGCAGGTTCGTGAAGAACTTATTAAATTGAAAGGAATTGGAAACTGGACAATTGATATTTATT
TAATGTTTTGTCTTCAGGAACCGGATTTGATTCCGTTAGGCGATATTGCAGTTGTAAATACCATTAAAGAACTGCTGGAT
ATTCATGATAAACAAGAAATGGAAATACATGCAGAACAGTGGAGTCCTTATAGATCTTATGCGACCTATTTGCTCTGGCA
TTATTATTTAAATAAGCGAAATAGGAAAATTACATATTAA

Upstream 100 bases:

>100_bases
AGCTTATCAGTCTAAATCTGTAAAATCTGCGGGCAAAAAAACTTTACAAGAATTAATTTCATTTTTAATTAATTTTGAAA
TTGACTTAAAAGTAAAAGTT

Downstream 100 bases:

>100_bases
CTGTCTGTTATATAAAAAGAAAAGTATATTAATTAATGTATATATATACAGATTAATATACTTTTTTCATTGTAAAAAAG
GATTGTTTGGTTACTTTTGC

Product: HhH-GPD family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 199; Mature: 199

Protein sequence:

>199_residues
MQEAIDFLTNKNPIFREIIEKYGLPPIPKRPQGFETLVLLILEQQVSIDSAKATFLKIKEYTTCNPETMVILPDEEYRNL
GVSRQKTKYIKILAEAILNKELDVESLASKPAKQVREELIKLKGIGNWTIDIYLMFCLQEPDLIPLGDIAVVNTIKELLD
IHDKQEMEIHAEQWSPYRSYATYLLWHYYLNKRNRKITY

Sequences:

>Translated_199_residues
MQEAIDFLTNKNPIFREIIEKYGLPPIPKRPQGFETLVLLILEQQVSIDSAKATFLKIKEYTTCNPETMVILPDEEYRNL
GVSRQKTKYIKILAEAILNKELDVESLASKPAKQVREELIKLKGIGNWTIDIYLMFCLQEPDLIPLGDIAVVNTIKELLD
IHDKQEMEIHAEQWSPYRSYATYLLWHYYLNKRNRKITY
>Mature_199_residues
MQEAIDFLTNKNPIFREIIEKYGLPPIPKRPQGFETLVLLILEQQVSIDSAKATFLKIKEYTTCNPETMVILPDEEYRNL
GVSRQKTKYIKILAEAILNKELDVESLASKPAKQVREELIKLKGIGNWTIDIYLMFCLQEPDLIPLGDIAVVNTIKELLD
IHDKQEMEIHAEQWSPYRSYATYLLWHYYLNKRNRKITY

Specific function: Hydrolysis of the deoxyribose N-glycosidic bond to excise 3-methyladenine, 3-methylguanine, 7-methylguanine, O2- methylthymine, and O2-methylcytosine from the damaged DNA polymer formed by alkylation lesions [H]

COG id: COG0122

COG function: function code L; 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the alkylbase DNA glycosidase alkA family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011257
- InterPro:   IPR003265
- InterPro:   IPR003583
- InterPro:   IPR023170 [H]

Pfam domain/function: PF00730 HhH-GPD [H]

EC number: =3.2.2.21 [H]

Molecular weight: Translated: 23317; Mature: 23317

Theoretical pI: Translated: 6.29; Mature: 6.29

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQEAIDFLTNKNPIFREIIEKYGLPPIPKRPQGFETLVLLILEQQVSIDSAKATFLKIKE
CCHHHHHHCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHEEEEEC
YTTCNPETMVILPDEEYRNLGVSRQKTKYIKILAEAILNKELDVESLASKPAKQVREELI
CCCCCCCEEEEECCHHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHCCHHHHHHHHHH
KLKGIGNWTIDIYLMFCLQEPDLIPLGDIAVVNTIKELLDIHDKQEMEIHAEQWSPYRSY
HHHCCCCHHHHHHHEEHHCCCCCCCCCHHHHHHHHHHHHHCCCCHHHEEEHHHCCCHHHH
ATYLLWHYYLNKRNRKITY
HHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MQEAIDFLTNKNPIFREIIEKYGLPPIPKRPQGFETLVLLILEQQVSIDSAKATFLKIKE
CCHHHHHHCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHEEEEEC
YTTCNPETMVILPDEEYRNLGVSRQKTKYIKILAEAILNKELDVESLASKPAKQVREELI
CCCCCCCEEEEECCHHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHCCHHHHHHHHHH
KLKGIGNWTIDIYLMFCLQEPDLIPLGDIAVVNTIKELLDIHDKQEMEIHAEQWSPYRSY
HHHCCCCHHHHHHHEEHHCCCCCCCCCHHHHHHHHHHHHHCCCCHHHEEEHHHCCCHHHH
ATYLLWHYYLNKRNRKITY
HHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969503; 9384377 [H]