Click here to switch to the map view.

The map label for this gene is yccS [H]

Identifier: 146284218

GI number: 146284218

Start: 4236258

End: 4238516

Strand: Direct

Name: yccS [H]

Synonym: PST_3906

Alternate gene names: 146284218

Gene position: 4236258-4238516 (Clockwise)

Preceding gene: 146284217

Following gene: 146284220

Centisome position: 92.75

GC content: 67.51

Gene sequence:

>2259_bases
TTGAGCCCCGGCCGCGGCCGTGACAGCGTATGCACTGGCGCTGCCCTATCTGCCCGTCCCCAACCGGATCGCTCCATGCC
GCAACCCTCGCTCAGCCAGTACTTACGCCGCCTCTGGGCGCTGGAGAAGTTCGGCTACAGCCTGCGCGTGCTGATCGCCA
TGGCCGGCAGCATGGGCCTGGCCTGGTACCTCGGGCAGCCATCGCTGATCATTCCGCTGTTCCTCGGCATCATCGCCAGC
GCCCTGGCGGAGACCGACGACAGCTGGCTGGGCCGGCTCAGCGCCCTGCTGGTGACCCTACTGTGCTTCAGCATCGCCGC
GGTAGCCGTCGAGTTGCTGTTTCCCTATCCGTGGCTGTTCGTTGCCGGCCTGGCGTTGTCCACCTTCGCCCTGGTCATGC
TCGGCGCGCTCGGCGAACGCTACGGCGCGATCGCCCAGGCCACGCTGATCCTCGCCATCTACAGCATGATCGCCGCCGAC
CAGCGCAACGGCGAGCTGCAGCAGTTCTGGCGCGACCCACTGCTGCTGGTGACCGGCGCCGCCTGGTATGGCCTGCTGTC
GGTATGCTGGAACGCGCTGTTCGCGCACCAGCCGGTGCAGCAGAGCCTGGCGCGGTTGTATCGCGAGCTGGGCCTGTACT
TCCGCTACAAGGCAGCGCTGTTCGAACCGGTGCGCCAGCTGGACGTCGAACAGCGCCGGCTCGAGCTGGCGCAGCAGAAC
GGCCGGGTGGTCAGCGCCCTGAATGCGGCCAAGGAAACCCTGCTGCACCGCCTGGGCAGCGGCCGCCCCGGCAGCAAGAT
CAATCACTACCTGAAGCTTTACTTCCTCGCCCAGGACCTGCACGAGCGTGTCAGCTCTTCGCACTACCCTTACCAGGCCC
TCGCCGAAGCCTTCTTCCACAGCGACGTGCTGTTTCGCTGCCAGCGCCTGCTGCGCCTGCAGGCCAGCGCCTGCGCCGAA
CTCGGCGAGGCCATTCAGCTGCGCCAGACGTTTCGCTACAGCGATGCCAATGCCCAGGCACTGGAGGACCTGCAGGCGTC
GCTGGAGCACCTGCGCGAGCAGAACAACCCGGCCTGGCGCGGCCTGCTGCGCTCGCTGCGGGCGCTGTCGAGCAACCTCT
CCACCCTGCAGCGCCAGCTCGCCAGTGCCAGCGATCCCGCCGCGCTGGAAGGCACGCAGGACAGCAGCCTGCTGGATCGC
CAGCCGCAGACGCTGCGCGAGGCGTTCAACCGCATCCGCCTGCAGCTGACGCCGACGTCCCTGCTGTTCCGCCACGCCTT
GCGCATGGCCATCGCCCTGGTCGCGGGTTACGCCGCGCTGCACGCCATCCACCCCGAGCAGGGCTACTGGGTGCTGCTGA
CCACCGTATTCGTCTGCCAACCCAACTATGGCGCCACCCGGATCAAGCTGGTGCAGCGGATCAGCGGCACCGTGCTCGGC
CTGGTGGTCGGCTGGGCGCTGTTCGATCTGTTCCCCAGCCAGCCGGTGCAGGCACTGTTCGCCGTGGTCGCCGGAGTGGT
GTTCTTCGCCACCCGCAGCACGCGCTACACCCTGGCCACGGCCGCGATCACGCTGATGGTGCTGTTCTGCTTCAACCAGG
TCGGCGATGGCTACGGGCTGATCTGGCCGCGCCTGTTCGATACCCTGCTCGGCAGCCTGATCGCCGCCGCCGCGGTGTTC
CTGATCCTGCCGGATTGGCAGGGCCGGCGTCTGAACCAGGTGGTCGCCAACACCCTCAGCTGCAACAGCGACTACCTGCG
CCAGATCATGCGCCAGTACGACAGTGGCAAGCACGACGACCTGGCCTACCGCCTGGCCCGGCGCAACGCCCACAACGCCG
ATGCCGCGCTGTCGACCACCCTCTCGAACATGCTTCTGGAGCCCGGCCACTTCCGCAAGGATGCCGAGACCGGCTTTCGC
TTTCTGATCCTCTCGCACACCCTGCTGAACTACCTGTCCGGCCTCGGCGCCCATCGCGAAAGCCTGCCTGACGATGCCAG
CGATGCGCTGCTCGAGCGCGCCGCGGAGCAGCTGGCGGCGAGCCTCGACGATCTGGCCACGGCGCTGGCACAGAACAAGC
CGGTGGCCATCTACAGCGAAGAGGAAGAAGCGCTGGCGCAGCAGCTCGAACAGATTCCGGAGGAGATGGACGATGCCCAT
CGCCTGGTGCAGACCCAGCTCGGGTTGATCTGCCGTCAGCTGGCACCGCTGCGCAGCATGGCCGCGCACCTGATCAAGCA
GCAGCCGGTCCAGCGCTAG

Upstream 100 bases:

>100_bases
AGGTAAGATCAAGGGCCGCTCGCTGAAGGTCCGCGTGCTGCGCTGAAGCCAGCCGCCGCCAAGCCGATAGCAAGCAGGCC
AGCATCAGGCGGCCGGAGGG

Downstream 100 bases:

>100_bases
TACTGGGGCAACGCGTCCGGGGCGGGCATGGCGTGGCGGCGAAAGATCGCCGCGTAGCTGCCGTCCTCGAGCATCGCGGC
GATCTCGCGCTCGAAGGTCG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 752; Mature: 751

Protein sequence:

>752_residues
MSPGRGRDSVCTGAALSARPQPDRSMPQPSLSQYLRRLWALEKFGYSLRVLIAMAGSMGLAWYLGQPSLIIPLFLGIIAS
ALAETDDSWLGRLSALLVTLLCFSIAAVAVELLFPYPWLFVAGLALSTFALVMLGALGERYGAIAQATLILAIYSMIAAD
QRNGELQQFWRDPLLLVTGAAWYGLLSVCWNALFAHQPVQQSLARLYRELGLYFRYKAALFEPVRQLDVEQRRLELAQQN
GRVVSALNAAKETLLHRLGSGRPGSKINHYLKLYFLAQDLHERVSSSHYPYQALAEAFFHSDVLFRCQRLLRLQASACAE
LGEAIQLRQTFRYSDANAQALEDLQASLEHLREQNNPAWRGLLRSLRALSSNLSTLQRQLASASDPAALEGTQDSSLLDR
QPQTLREAFNRIRLQLTPTSLLFRHALRMAIALVAGYAALHAIHPEQGYWVLLTTVFVCQPNYGATRIKLVQRISGTVLG
LVVGWALFDLFPSQPVQALFAVVAGVVFFATRSTRYTLATAAITLMVLFCFNQVGDGYGLIWPRLFDTLLGSLIAAAAVF
LILPDWQGRRLNQVVANTLSCNSDYLRQIMRQYDSGKHDDLAYRLARRNAHNADAALSTTLSNMLLEPGHFRKDAETGFR
FLILSHTLLNYLSGLGAHRESLPDDASDALLERAAEQLAASLDDLATALAQNKPVAIYSEEEEALAQQLEQIPEEMDDAH
RLVQTQLGLICRQLAPLRSMAAHLIKQQPVQR

Sequences:

>Translated_752_residues
MSPGRGRDSVCTGAALSARPQPDRSMPQPSLSQYLRRLWALEKFGYSLRVLIAMAGSMGLAWYLGQPSLIIPLFLGIIAS
ALAETDDSWLGRLSALLVTLLCFSIAAVAVELLFPYPWLFVAGLALSTFALVMLGALGERYGAIAQATLILAIYSMIAAD
QRNGELQQFWRDPLLLVTGAAWYGLLSVCWNALFAHQPVQQSLARLYRELGLYFRYKAALFEPVRQLDVEQRRLELAQQN
GRVVSALNAAKETLLHRLGSGRPGSKINHYLKLYFLAQDLHERVSSSHYPYQALAEAFFHSDVLFRCQRLLRLQASACAE
LGEAIQLRQTFRYSDANAQALEDLQASLEHLREQNNPAWRGLLRSLRALSSNLSTLQRQLASASDPAALEGTQDSSLLDR
QPQTLREAFNRIRLQLTPTSLLFRHALRMAIALVAGYAALHAIHPEQGYWVLLTTVFVCQPNYGATRIKLVQRISGTVLG
LVVGWALFDLFPSQPVQALFAVVAGVVFFATRSTRYTLATAAITLMVLFCFNQVGDGYGLIWPRLFDTLLGSLIAAAAVF
LILPDWQGRRLNQVVANTLSCNSDYLRQIMRQYDSGKHDDLAYRLARRNAHNADAALSTTLSNMLLEPGHFRKDAETGFR
FLILSHTLLNYLSGLGAHRESLPDDASDALLERAAEQLAASLDDLATALAQNKPVAIYSEEEEALAQQLEQIPEEMDDAH
RLVQTQLGLICRQLAPLRSMAAHLIKQQPVQR
>Mature_751_residues
SPGRGRDSVCTGAALSARPQPDRSMPQPSLSQYLRRLWALEKFGYSLRVLIAMAGSMGLAWYLGQPSLIIPLFLGIIASA
LAETDDSWLGRLSALLVTLLCFSIAAVAVELLFPYPWLFVAGLALSTFALVMLGALGERYGAIAQATLILAIYSMIAADQ
RNGELQQFWRDPLLLVTGAAWYGLLSVCWNALFAHQPVQQSLARLYRELGLYFRYKAALFEPVRQLDVEQRRLELAQQNG
RVVSALNAAKETLLHRLGSGRPGSKINHYLKLYFLAQDLHERVSSSHYPYQALAEAFFHSDVLFRCQRLLRLQASACAEL
GEAIQLRQTFRYSDANAQALEDLQASLEHLREQNNPAWRGLLRSLRALSSNLSTLQRQLASASDPAALEGTQDSSLLDRQ
PQTLREAFNRIRLQLTPTSLLFRHALRMAIALVAGYAALHAIHPEQGYWVLLTTVFVCQPNYGATRIKLVQRISGTVLGL
VVGWALFDLFPSQPVQALFAVVAGVVFFATRSTRYTLATAAITLMVLFCFNQVGDGYGLIWPRLFDTLLGSLIAAAAVFL
ILPDWQGRRLNQVVANTLSCNSDYLRQIMRQYDSGKHDDLAYRLARRNAHNADAALSTTLSNMLLEPGHFRKDAETGFRF
LILSHTLLNYLSGLGAHRESLPDDASDALLERAAEQLAASLDDLATALAQNKPVAIYSEEEEALAQQLEQIPEEMDDAHR
LVQTQLGLICRQLAPLRSMAAHLIKQQPVQR

Specific function: Unknown

COG id: COG1289

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the yccS/yhfK family [H]

Homologues:

Organism=Escherichia coli, GI87081808, Length=704, Percent_Identity=40.9090909090909, Blast_Score=489, Evalue=1e-139,
Organism=Escherichia coli, GI87082248, Length=554, Percent_Identity=25.2707581227437, Blast_Score=110, Evalue=3e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010019
- InterPro:   IPR010020 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 83511; Mature: 83380

Theoretical pI: Translated: 8.30; Mature: 8.30

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSPGRGRDSVCTGAALSARPQPDRSMPQPSLSQYLRRLWALEKFGYSLRVLIAMAGSMGL
CCCCCCCCCHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHCCCCE
AWYLGQPSLIIPLFLGIIASALAETDDSWLGRLSALLVTLLCFSIAAVAVELLFPYPWLF
EEECCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH
VAGLALSTFALVMLGALGERYGAIAQATLILAIYSMIAADQRNGELQQFWRDPLLLVTGA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCHHHHHHH
AWYGLLSVCWNALFAHQPVQQSLARLYRELGLYFRYKAALFEPVRQLDVEQRRLELAQQN
HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
GRVVSALNAAKETLLHRLGSGRPGSKINHYLKLYFLAQDLHERVSSSHYPYQALAEAFFH
CCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
SDVLFRCQRLLRLQASACAELGEAIQLRQTFRYSDANAQALEDLQASLEHLREQNNPAWR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHH
GLLRSLRALSSNLSTLQRQLASASDPAALEGTQDSSLLDRQPQTLREAFNRIRLQLTPTS
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHCCCHHHHHHHHHHEEEECHHH
LLFRHALRMAIALVAGYAALHAIHPEQGYWVLLTTVFVCQPNYGATRIKLVQRISGTVLG
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
LVVGWALFDLFPSQPVQALFAVVAGVVFFATRSTRYTLATAAITLMVLFCFNQVGDGYGL
HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCC
IWPRLFDTLLGSLIAAAAVFLILPDWQGRRLNQVVANTLSCNSDYLRQIMRQYDSGKHDD
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHCCCCCHH
LAYRLARRNAHNADAALSTTLSNMLLEPGHFRKDAETGFRFLILSHTLLNYLSGLGAHRE
HHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHH
SLPDDASDALLERAAEQLAASLDDLATALAQNKPVAIYSEEEEALAQQLEQIPEEMDDAH
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHHHHHHHH
RLVQTQLGLICRQLAPLRSMAAHLIKQQPVQR
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
SPGRGRDSVCTGAALSARPQPDRSMPQPSLSQYLRRLWALEKFGYSLRVLIAMAGSMGL
CCCCCCCCHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHCCCCE
AWYLGQPSLIIPLFLGIIASALAETDDSWLGRLSALLVTLLCFSIAAVAVELLFPYPWLF
EEECCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH
VAGLALSTFALVMLGALGERYGAIAQATLILAIYSMIAADQRNGELQQFWRDPLLLVTGA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCHHHHHHH
AWYGLLSVCWNALFAHQPVQQSLARLYRELGLYFRYKAALFEPVRQLDVEQRRLELAQQN
HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
GRVVSALNAAKETLLHRLGSGRPGSKINHYLKLYFLAQDLHERVSSSHYPYQALAEAFFH
CCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
SDVLFRCQRLLRLQASACAELGEAIQLRQTFRYSDANAQALEDLQASLEHLREQNNPAWR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHH
GLLRSLRALSSNLSTLQRQLASASDPAALEGTQDSSLLDRQPQTLREAFNRIRLQLTPTS
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHCCCHHHHHHHHHHEEEECHHH
LLFRHALRMAIALVAGYAALHAIHPEQGYWVLLTTVFVCQPNYGATRIKLVQRISGTVLG
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
LVVGWALFDLFPSQPVQALFAVVAGVVFFATRSTRYTLATAAITLMVLFCFNQVGDGYGL
HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCC
IWPRLFDTLLGSLIAAAAVFLILPDWQGRRLNQVVANTLSCNSDYLRQIMRQYDSGKHDD
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHCCCCCHH
LAYRLARRNAHNADAALSTTLSNMLLEPGHFRKDAETGFRFLILSHTLLNYLSGLGAHRE
HHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHH
SLPDDASDALLERAAEQLAASLDDLATALAQNKPVAIYSEEEEALAQQLEQIPEEMDDAH
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHHHHHHHH
RLVQTQLGLICRQLAPLRSMAAHLIKQQPVQR
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]