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The map label for this gene is ycdI [C]

Identifier: 146283918

GI number: 146283918

Start: 3888765

End: 3889355

Strand: Direct

Name: ycdI [C]

Synonym: PST_3601

Alternate gene names: 146283918

Gene position: 3888765-3889355 (Clockwise)

Preceding gene: 146283917

Following gene: 146283919

Centisome position: 85.14

GC content: 67.34

Gene sequence:

>591_bases
ATGCACGCCCCCATCGACTCGAATGCCCTCGCGACGCTGTTCAGCGAGGCCCGCACCCACAGCGCCTGGTTGGACAAAGC
GGTACCGGATGCCCTGCTCGAACAGCTCTACGAACACGTCCGCCTCGGTCCGACCGCGGTCAACAGCTGCCCGGCGCGCT
TCGTCTTCGTGCGCAGCGCCGAGGGCAAGCAGAAGCTCGCGCCCTGCCTGTCCAAGGGCAACCTGGACAAGACCCTGGCC
GCGCCGGTGACGGTGGTCGTCGCCTATGACGAGGACTTCCCGGAAACCCTGCCCGAGCTGTTCCCGCACGCCGACGCGCG
CAGCTGGTACGCCGGGCAGCCGGCACTGATCACCGAGAACGCACTGCGCAACAGCTCGCTGCAGGCCGGTTATCTGATCC
TCGCTGCCCGAGCTTTGGGGCTCGATTGCGGACCGATGTCCGGCTTCGACGGCAAGGCACTGGATGCGGCCTTCTTCGCC
GGCACGAGCTGGAAATCCAATCTGCTGATCAACCTCGGCTACGGCGATGCCAGCAAGCTGCGCGACCGCCTGCCACGCCT
GCCCTTCGACCGCGCCTGCGTCCTCGCCTGA

Upstream 100 bases:

>100_bases
CACGCGTCCAGCGTCAGCGACAGCGAACCCTTCAACCAGATCCTGCTGGACCATCTTGCCGAGCAATGCGGCCAGGTCGC
AGCAGCCTGAGGACCCGAAC

Downstream 100 bases:

>100_bases
TGGAGAACCGACCATGCAACTGGCTCAATGCGAAACCACCAGTCAATTCAGCGCTCCAGTGATTCGTGAGGATTATCGTG
ATGCCATGGCGCGCCTGGCC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 196; Mature: 196

Protein sequence:

>196_residues
MHAPIDSNALATLFSEARTHSAWLDKAVPDALLEQLYEHVRLGPTAVNSCPARFVFVRSAEGKQKLAPCLSKGNLDKTLA
APVTVVVAYDEDFPETLPELFPHADARSWYAGQPALITENALRNSSLQAGYLILAARALGLDCGPMSGFDGKALDAAFFA
GTSWKSNLLINLGYGDASKLRDRLPRLPFDRACVLA

Sequences:

>Translated_196_residues
MHAPIDSNALATLFSEARTHSAWLDKAVPDALLEQLYEHVRLGPTAVNSCPARFVFVRSAEGKQKLAPCLSKGNLDKTLA
APVTVVVAYDEDFPETLPELFPHADARSWYAGQPALITENALRNSSLQAGYLILAARALGLDCGPMSGFDGKALDAAFFA
GTSWKSNLLINLGYGDASKLRDRLPRLPFDRACVLA
>Mature_196_residues
MHAPIDSNALATLFSEARTHSAWLDKAVPDALLEQLYEHVRLGPTAVNSCPARFVFVRSAEGKQKLAPCLSKGNLDKTLA
APVTVVVAYDEDFPETLPELFPHADARSWYAGQPALITENALRNSSLQAGYLILAARALGLDCGPMSGFDGKALDAAFFA
GTSWKSNLLINLGYGDASKLRDRLPRLPFDRACVLA

Specific function: Unknown

COG id: COG0778

COG function: function code C; Nitroreductase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nitroreductase family. HadB/RutE subfamily

Homologues:

Organism=Escherichia coli, GI1787243, Length=195, Percent_Identity=58.4615384615385, Blast_Score=241, Evalue=3e-65,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y3601_PSEU5 (A4VQH8)

Other databases:

- EMBL:   CP000304
- RefSeq:   YP_001174071.1
- ProteinModelPortal:   A4VQH8
- SMR:   A4VQH8
- STRING:   A4VQH8
- GeneID:   5096562
- GenomeReviews:   CP000304_GR
- KEGG:   psa:PST_3601
- eggNOG:   COG0778
- HOGENOM:   HBG322534
- OMA:   FSEARTH
- PhylomeDB:   A4VQH8
- ProtClustDB:   PRK05365
- BioCyc:   PSTU379731:PST_3601-MONOMER
- HAMAP:   MF_01204
- InterPro:   IPR000415

Pfam domain/function: PF00881 Nitroreductase; SSF55469 Nitroreductase

EC number: 1.-.-.- [C]

Molecular weight: Translated: 21157; Mature: 21157

Theoretical pI: Translated: 6.50; Mature: 6.50

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHAPIDSNALATLFSEARTHSAWLDKAVPDALLEQLYEHVRLGPTAVNSCPARFVFVRSA
CCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCHHHCCCCCEEEEEECC
EGKQKLAPCLSKGNLDKTLAAPVTVVVAYDEDFPETLPELFPHADARSWYAGQPALITEN
CCHHHHHHHHHCCCCCCCCCCCEEEEEEECCCCHHHHHHHCCCCCCCCCCCCCCCEEEHH
ALRNSSLQAGYLILAARALGLDCGPMSGFDGKALDAAFFAGTSWKSNLLINLGYGDASKL
HHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHCCCCCCCCEEEEECCCCHHHH
RDRLPRLPFDRACVLA
HHHCCCCCCCCCCCCC
>Mature Secondary Structure
MHAPIDSNALATLFSEARTHSAWLDKAVPDALLEQLYEHVRLGPTAVNSCPARFVFVRSA
CCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCHHHCCCCCEEEEEECC
EGKQKLAPCLSKGNLDKTLAAPVTVVVAYDEDFPETLPELFPHADARSWYAGQPALITEN
CCHHHHHHHHHCCCCCCCCCCCEEEEEEECCCCHHHHHHHCCCCCCCCCCCCCCCEEEHH
ALRNSSLQAGYLILAARALGLDCGPMSGFDGKALDAAFFAGTSWKSNLLINLGYGDASKL
HHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHCCCCCCCCEEEEECCCCHHHH
RDRLPRLPFDRACVLA
HHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: Fmn (Potential) [C]

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA