Click here to switch to the map view.

The map label for this gene is rutC

Identifier: 146283916

GI number: 146283916

Start: 3887436

End: 3887891

Strand: Direct

Name: rutC

Synonym: PST_3599

Alternate gene names: 146283916

Gene position: 3887436-3887891 (Clockwise)

Preceding gene: 146283915

Following gene: 146283917

Centisome position: 85.11

GC content: 65.57

Gene sequence:

>456_bases
GTGCCCGACCGCGGCGCCCGCAGAGGCGCCCGCCGGGTTCGCCTGAATGCCTTGCAAGGAATCAACGACATGCCCAAGCA
ATCCATCATCCCCGCCGGCACCGGCAAACCGCTCGCCCCCTACGTGCCCGGCTCCATGGCCGATGGCGTGGTCTACGTCT
CCGGCACCCTGCCGTTCGACAAGGACAACAACGTGGTCCACGTCGGCGACGCCGCCGCCCAGACCCGCCATGTGCTGGAA
ACCATCAAGGGCGTCGTCGAGGCTGCCGGCGGCAGCATGCACGACGTCACCTTCAACATGATCATGCTCACCGACTGGGC
CAACTACGCCAAGGTCAACGAGGTGTACGCCGAGTACTTCCCCGGCGAGAAGCCCGCGCGCTACTGCATTCAATGCGGGC
TGGTAAAGCCCGATGCGCTGATCGAGATCGCCAGCATCGCCCACGTCGGCCAATAG

Upstream 100 bases:

>100_bases
CAACATCGAAACGTTCTTCGGCTGGGTCTCCAGCGTCGACGCCTTCTGCCAGAGCTTCGCGGCCGCGCCAGAGGTGGCGG
TCGCCAGCTGATTACCCCAA

Downstream 100 bases:

>100_bases
CGCCTACCAGAGCGGGTCAGCCGGCACGCCGGCGGCCCGCTGGTCGACCTCGCGGAGGGAGTGACATGCACTACGAACTT
CATGGTCGCATGGAGCCGGA

Product: endoribonuclease L-PSP family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 151; Mature: 150

Protein sequence:

>151_residues
MPDRGARRGARRVRLNALQGINDMPKQSIIPAGTGKPLAPYVPGSMADGVVYVSGTLPFDKDNNVVHVGDAAAQTRHVLE
TIKGVVEAAGGSMHDVTFNMIMLTDWANYAKVNEVYAEYFPGEKPARYCIQCGLVKPDALIEIASIAHVGQ

Sequences:

>Translated_151_residues
MPDRGARRGARRVRLNALQGINDMPKQSIIPAGTGKPLAPYVPGSMADGVVYVSGTLPFDKDNNVVHVGDAAAQTRHVLE
TIKGVVEAAGGSMHDVTFNMIMLTDWANYAKVNEVYAEYFPGEKPARYCIQCGLVKPDALIEIASIAHVGQ
>Mature_150_residues
PDRGARRGARRVRLNALQGINDMPKQSIIPAGTGKPLAPYVPGSMADGVVYVSGTLPFDKDNNVVHVGDAAAQTRHVLET
IKGVVEAAGGSMHDVTFNMIMLTDWANYAKVNEVYAEYFPGEKPARYCIQCGLVKPDALIEIASIAHVGQ

Specific function: May reduce aminoacrylate peracid to aminoacrylate. Required to remove a toxic intermediate produce by the pyrimidine nitrogen degradation

COG id: COG0251

COG function: function code J; Putative translation initiation inhibitor, yjgF family

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RutC family

Homologues:

Organism=Escherichia coli, GI1787245, Length=128, Percent_Identity=70.3125, Blast_Score=204, Evalue=2e-54,
Organism=Escherichia coli, GI87082213, Length=113, Percent_Identity=32.7433628318584, Blast_Score=66, Evalue=1e-12,
Organism=Escherichia coli, GI87082396, Length=113, Percent_Identity=32.7433628318584, Blast_Score=65, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI25148896, Length=139, Percent_Identity=29.4964028776978, Blast_Score=66, Evalue=8e-12,
Organism=Caenorhabditis elegans, GI71982068, Length=138, Percent_Identity=29.7101449275362, Blast_Score=65, Evalue=9e-12,
Organism=Caenorhabditis elegans, GI71982075, Length=128, Percent_Identity=30.46875, Blast_Score=64, Evalue=2e-11,
Organism=Saccharomyces cerevisiae, GI6322138, Length=109, Percent_Identity=30.2752293577982, Blast_Score=65, Evalue=4e-12,
Organism=Saccharomyces cerevisiae, GI6320899, Length=100, Percent_Identity=34, Blast_Score=65, Evalue=6e-12,
Organism=Drosophila melanogaster, GI19921376, Length=125, Percent_Identity=38.4, Blast_Score=87, Evalue=6e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RUTC_PSEU5 (A4VQH6)

Other databases:

- EMBL:   CP000304
- RefSeq:   YP_001174069.1
- ProteinModelPortal:   A4VQH6
- STRING:   A4VQH6
- GeneID:   5096560
- GenomeReviews:   CP000304_GR
- KEGG:   psa:PST_3599
- eggNOG:   COG0251
- HOGENOM:   HBG695954
- OMA:   VYAEYFP
- PhylomeDB:   A4VQH6
- ProtClustDB:   CLSK879923
- BioCyc:   PSTU379731:PST_3599-MONOMER
- HAMAP:   MF_00831
- InterPro:   IPR013813
- InterPro:   IPR006175
- InterPro:   IPR019898
- Gene3D:   G3DSA:3.30.1330.40
- PANTHER:   PTHR11803
- TIGRFAMs:   TIGR03610

Pfam domain/function: PF01042 Ribonuc_L-PSP; SSF55298 YjgF/chorismate_mutase-like

EC number: NA

Molecular weight: Translated: 16222; Mature: 16091

Theoretical pI: Translated: 7.57; Mature: 7.57

Prosite motif: PS01094 UPF0076

Important sites: ACT_SITE 129-129

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPDRGARRGARRVRLNALQGINDMPKQSIIPAGTGKPLAPYVPGSMADGVVYVSGTLPFD
CCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCC
KDNNVVHVGDAAAQTRHVLETIKGVVEAAGGSMHDVTFNMIMLTDWANYAKVNEVYAEYF
CCCCEEEECCHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEEEECCCCHHHHHHHHHHHC
PGEKPARYCIQCGLVKPDALIEIASIAHVGQ
CCCCCHHHHHHCCCCCCHHHHHHHHHHHCCC
>Mature Secondary Structure 
PDRGARRGARRVRLNALQGINDMPKQSIIPAGTGKPLAPYVPGSMADGVVYVSGTLPFD
CCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCC
KDNNVVHVGDAAAQTRHVLETIKGVVEAAGGSMHDVTFNMIMLTDWANYAKVNEVYAEYF
CCCCEEEECCHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEEEECCCCHHHHHHHHHHHC
PGEKPARYCIQCGLVKPDALIEIASIAHVGQ
CCCCCHHHHHHCCCCCCHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA