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The map label for this gene is ydaL [C]

Identifier: 146282676

GI number: 146282676

Start: 2546382

End: 2546942

Strand: Direct

Name: ydaL [C]

Synonym: PST_2332

Alternate gene names: 146282676

Gene position: 2546382-2546942 (Clockwise)

Preceding gene: 146282675

Following gene: 146282677

Centisome position: 55.75

GC content: 63.46

Gene sequence:

>561_bases
ATGCAAGACGACGACGATTTTTCCCTCTTCCAATCGGCCGTGCGCGGTGTCAAGCCGATAACCCATGACCGTGCCGAAAC
CGGCAAGGTCCGCAGCAACCGCGAACAGATCGCGACCCGCCGCAGCAACGCCACGCTCAGCAACGACTCGACGCGCGTCG
ACGGACTGTCGGACCAGTTCGTCATCGACGTCGGCGCGGAGGATGAGCTCTACTGGGCGCGTGACGGCGTGCAGGACGCG
CAGATGCGCAAGCTCAAGGCCGGCCAGATAGCGTTCGAAGGCAGCCTGGACCTGCATGGCATGACAGTGGAAAAGGCCCG
CGAACAGCTATGGGACTTCATCGCCGAAGCAATCCGCCTCGAAGTCCGTTGCGTCCGCGTGACTCATGGCAAGGCCGCGC
GGCTGGATGGCAAGCGCCCATTGATCAAGAGCCACGTAAACACCTGGTTGCGGCAACACCCGCAGGTGCTTGGTTTCACG
TCCTGCCTGCCGCGCCATGGGGGGACCGGCGCACTCTACGTGGTGCTCAAGCGCACCATGCTGGAAGGGCGCGACGAATG
A

Upstream 100 bases:

>100_bases
TTTTGCGGTCTGCGTGCCGGACACAGCAGCCCTGAGCCGCTAGGACGCTTTCTGCGCGCGGCAGTGGCTGGGGTAAACTG
GCCTTCTGTTTGGAGGCCCC

Downstream 100 bases:

>100_bases
CTGCTCGGCTCACGCCAGTCGCTCGACAGGCTTGCCAGCAGAGCGGCAGCCCCCTACCCTTCGCGTTCGCGACCCTATGA
AGCCTGACAGGTAGCTCAAT

Product: Smr domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 186; Mature: 186

Protein sequence:

>186_residues
MQDDDDFSLFQSAVRGVKPITHDRAETGKVRSNREQIATRRSNATLSNDSTRVDGLSDQFVIDVGAEDELYWARDGVQDA
QMRKLKAGQIAFEGSLDLHGMTVEKAREQLWDFIAEAIRLEVRCVRVTHGKAARLDGKRPLIKSHVNTWLRQHPQVLGFT
SCLPRHGGTGALYVVLKRTMLEGRDE

Sequences:

>Translated_186_residues
MQDDDDFSLFQSAVRGVKPITHDRAETGKVRSNREQIATRRSNATLSNDSTRVDGLSDQFVIDVGAEDELYWARDGVQDA
QMRKLKAGQIAFEGSLDLHGMTVEKAREQLWDFIAEAIRLEVRCVRVTHGKAARLDGKRPLIKSHVNTWLRQHPQVLGFT
SCLPRHGGTGALYVVLKRTMLEGRDE
>Mature_186_residues
MQDDDDFSLFQSAVRGVKPITHDRAETGKVRSNREQIATRRSNATLSNDSTRVDGLSDQFVIDVGAEDELYWARDGVQDA
QMRKLKAGQIAFEGSLDLHGMTVEKAREQLWDFIAEAIRLEVRCVRVTHGKAARLDGKRPLIKSHVNTWLRQHPQVLGFT
SCLPRHGGTGALYVVLKRTMLEGRDE

Specific function: Unknown

COG id: COG2840

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Smr domain [H]

Homologues:

Organism=Escherichia coli, GI1787602, Length=175, Percent_Identity=32, Blast_Score=84, Evalue=6e-18,
Organism=Escherichia coli, GI1788671, Length=174, Percent_Identity=29.3103448275862, Blast_Score=74, Evalue=4e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002625
- InterPro:   IPR022990 [H]

Pfam domain/function: PF01713 Smr [H]

EC number: NA

Molecular weight: Translated: 20957; Mature: 20957

Theoretical pI: Translated: 8.26; Mature: 8.26

Prosite motif: PS50828 SMR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQDDDDFSLFQSAVRGVKPITHDRAETGKVRSNREQIATRRSNATLSNDSTRVDGLSDQF
CCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHCCHHHHHHHHCCCEECCCCCCCCCCCCCE
VIDVGAEDELYWARDGVQDAQMRKLKAGQIAFEGSLDLHGMTVEKAREQLWDFIAEAIRL
EEEECCCCCEEECCCCCCHHHHHHHHCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHH
EVRCVRVTHGKAARLDGKRPLIKSHVNTWLRQHPQVLGFTSCLPRHGGTGALYVVLKRTM
HHEEEEEECCCEECCCCCCCHHHHHHHHHHHHCCCHHHHHHHCCCCCCCHHHHHHHHHHH
LEGRDE
HCCCCC
>Mature Secondary Structure
MQDDDDFSLFQSAVRGVKPITHDRAETGKVRSNREQIATRRSNATLSNDSTRVDGLSDQF
CCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHCCHHHHHHHHCCCEECCCCCCCCCCCCCE
VIDVGAEDELYWARDGVQDAQMRKLKAGQIAFEGSLDLHGMTVEKAREQLWDFIAEAIRL
EEEECCCCCEEECCCCCCHHHHHHHHCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHH
EVRCVRVTHGKAARLDGKRPLIKSHVNTWLRQHPQVLGFTSCLPRHGGTGALYVVLKRTM
HHEEEEEECCCEECCCCCCCHHHHHHHHHHHHCCCHHHHHHHCCCCCCCHHHHHHHHHHH
LEGRDE
HCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12620739 [H]