Definition Pseudomonas stutzeri A1501, complete genome.
Accession NC_009434
Length 4,567,418

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The map label for this gene is yejA [H]

Identifier: 146282605

GI number: 146282605

Start: 2461061

End: 2462890

Strand: Direct

Name: yejA [H]

Synonym: PST_2256

Alternate gene names: 146282605

Gene position: 2461061-2462890 (Clockwise)

Preceding gene: 146282603

Following gene: 146282606

Centisome position: 53.88

GC content: 63.17

Gene sequence:

>1830_bases
ATGCGAGCCCTGCTACTGTTACTGACCTGTCTGGCCTTGAGCTTTCCCGCCCTCGCCACCATCAGCGAAAGCCATGGTTA
TGCGCAGTTCGGCACTCTTAAGTACCCAGCCTCCTTTACCCATTTCGACTGGGTGAACCCGCGCGCGCCCAAGGGCGGCC
GGATCAAGCTGATGGCGTCAGGCACCTTCGACACGCTCAACCCCTACACCTTCAAAGGCACCAGCCCGAGCGCCTCGCCC
GGTTTCCTGCAGTACGGCATCAGTGAGCTCAACGAACCGCTGATGGTCGGCACCGGACTGTACGACCCATCCGGCGACGA
ACCCGCGTCCAGTTATGGACTGATTGCCGAATCGGTGGAGTACAGCGACAACAACAGCTGGGTGGTATTCAACCTGCGCA
AGGAAGCCCGCTTCCATGACGGCAAGCCCATCACCGCATACGACGTCGCCTTCTCCTACCGCCTCCTGATCAAGGACGGC
CACCCGCAGTACCGCACCAACCTGCAGGGCGTGAAGCGCGTCGACATCCTCAACCGCCACCGCATCCGCTTCGTCTTCGA
GCAGCCGAACAATCCGCTGCTCATCATGCGCCTCGGCGAACTCCCGGTGCTGCCGCAGCACTACTGGAAGAATCGCGACT
TCAAGGCCACCACCTTCGAGCCGCCGCTGGGCAGCGGTCCCTACCGCATCACGCAGGTGCAACCCGGGCGCCAGGTGGTG
TTCGAACGCGTGCGCGACTGGTGGGGGGCGAAGCTGCCAGTCAACCAGGGCAAGTACAACTTCAACCGCGTCGAGGTCGA
GTTCTACCGCGACAACGTGGTGGCGTTCGAAGCGTTCAAGGTCGGTGAATTCGACTTCTACATCGAGCACCAGGCCAAGA
ACTGGGCCAACGGCTATCAATTCCCGGCCATGCTGCGGGGCGACATCATCCGCGCGGAGATTCCGCATCAGATTCCGACC
CAAACCCAGGCGCTGTTCATGAACGGGCGCCGCGCGACGTTCGCCGACCAGCGCGTGCGCGAGGCCCTCGGCCTGATGTT
CGATTTCGAGTGGACCAACCGCGCACTGTTCTATGGCGCCTATCGCCGCAGCGAAAGCTACTACCCCAACAGCGAGTTCA
GCGCCACCGGCAAGCCCGAAGGCGGTGAGTGGCTGCTGCTTTCACCCTATCGCAAGCAGCTTCCGGCCAAGCTGTTCAGC
GAGCCGTTCCAACTGCCGCAAACCGATGGCCGCGGCATCCCGCGGGATACCCTGCGCCGTGCCCTGGGCCTGCTCGCCGA
AGCGGGCTGGAAACCCTCCGATGCCGGCCTGTTGAACAGCGCCGGGCAACCGCTGCGGTTCGAGATACTGCTGGTCAATC
CGCGGCTGGAGCGCATTCTCCAGCCTTATGTGGAGAATCTCGCGCGCATCGGCATCCAGGCCAACCTGCGCACCGTTGAC
GGCGCGCAGTACAAGCAGCGGCTGGACCACTACGATTACGACATGATCCTGATGACGCTGGTGCAGAGCCTGAGCCCCGG
GATCGAGCAGCGCCTGTACTTCCATTCCAGCCAGGTGGACGTCAAGGGTGGACGCAACTATGCCGGCGTCGCCAACCCCA
TCGTCGACGACCTGATCGGCAAGCTGCTCGCCGCGCAGACCCGCGACGAGCAGGTCGCAGCCGCCCGCGCCATCGACCGG
GTGCTGCTGTGGAACCACTACACCATTCCGAACTGGTTCATCAGTAACCATCGCCTGGCGTACCGAAATCGGTTCGCCCA
CGTCACCACGCCGCCCTACACGCTGGGTCTGCGCGCCTGGTGGCTGAAGAGCCTGGAGAAGAGCAAATGA

Upstream 100 bases:

>100_bases
GCAGTTTGCCCGAGGTGACCGGCCTTTTTCCAGCGCATACAAGCTGTTACTGTACCGGCCCGAGAAGCCCGTAAGCGCCA
AGGATCGGATCCCCCGTCTG

Downstream 100 bases:

>100_bases
ACAATCGCGTGCGCCATTCGCTGTTTCGCGCCGGCCTGCTGAGTCTGCTCTGCATGGCAACCCTGGCCGAGGCCGCCCCC
CGCCATGCCCTGACGCTGTA

Product: ABC transporter, periplasmic substrate-binding protein

Products: ADP; phosphate; oligopeptides [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 609; Mature: 609

Protein sequence:

>609_residues
MRALLLLLTCLALSFPALATISESHGYAQFGTLKYPASFTHFDWVNPRAPKGGRIKLMASGTFDTLNPYTFKGTSPSASP
GFLQYGISELNEPLMVGTGLYDPSGDEPASSYGLIAESVEYSDNNSWVVFNLRKEARFHDGKPITAYDVAFSYRLLIKDG
HPQYRTNLQGVKRVDILNRHRIRFVFEQPNNPLLIMRLGELPVLPQHYWKNRDFKATTFEPPLGSGPYRITQVQPGRQVV
FERVRDWWGAKLPVNQGKYNFNRVEVEFYRDNVVAFEAFKVGEFDFYIEHQAKNWANGYQFPAMLRGDIIRAEIPHQIPT
QTQALFMNGRRATFADQRVREALGLMFDFEWTNRALFYGAYRRSESYYPNSEFSATGKPEGGEWLLLSPYRKQLPAKLFS
EPFQLPQTDGRGIPRDTLRRALGLLAEAGWKPSDAGLLNSAGQPLRFEILLVNPRLERILQPYVENLARIGIQANLRTVD
GAQYKQRLDHYDYDMILMTLVQSLSPGIEQRLYFHSSQVDVKGGRNYAGVANPIVDDLIGKLLAAQTRDEQVAAARAIDR
VLLWNHYTIPNWFISNHRLAYRNRFAHVTTPPYTLGLRAWWLKSLEKSK

Sequences:

>Translated_609_residues
MRALLLLLTCLALSFPALATISESHGYAQFGTLKYPASFTHFDWVNPRAPKGGRIKLMASGTFDTLNPYTFKGTSPSASP
GFLQYGISELNEPLMVGTGLYDPSGDEPASSYGLIAESVEYSDNNSWVVFNLRKEARFHDGKPITAYDVAFSYRLLIKDG
HPQYRTNLQGVKRVDILNRHRIRFVFEQPNNPLLIMRLGELPVLPQHYWKNRDFKATTFEPPLGSGPYRITQVQPGRQVV
FERVRDWWGAKLPVNQGKYNFNRVEVEFYRDNVVAFEAFKVGEFDFYIEHQAKNWANGYQFPAMLRGDIIRAEIPHQIPT
QTQALFMNGRRATFADQRVREALGLMFDFEWTNRALFYGAYRRSESYYPNSEFSATGKPEGGEWLLLSPYRKQLPAKLFS
EPFQLPQTDGRGIPRDTLRRALGLLAEAGWKPSDAGLLNSAGQPLRFEILLVNPRLERILQPYVENLARIGIQANLRTVD
GAQYKQRLDHYDYDMILMTLVQSLSPGIEQRLYFHSSQVDVKGGRNYAGVANPIVDDLIGKLLAAQTRDEQVAAARAIDR
VLLWNHYTIPNWFISNHRLAYRNRFAHVTTPPYTLGLRAWWLKSLEKSK
>Mature_609_residues
MRALLLLLTCLALSFPALATISESHGYAQFGTLKYPASFTHFDWVNPRAPKGGRIKLMASGTFDTLNPYTFKGTSPSASP
GFLQYGISELNEPLMVGTGLYDPSGDEPASSYGLIAESVEYSDNNSWVVFNLRKEARFHDGKPITAYDVAFSYRLLIKDG
HPQYRTNLQGVKRVDILNRHRIRFVFEQPNNPLLIMRLGELPVLPQHYWKNRDFKATTFEPPLGSGPYRITQVQPGRQVV
FERVRDWWGAKLPVNQGKYNFNRVEVEFYRDNVVAFEAFKVGEFDFYIEHQAKNWANGYQFPAMLRGDIIRAEIPHQIPT
QTQALFMNGRRATFADQRVREALGLMFDFEWTNRALFYGAYRRSESYYPNSEFSATGKPEGGEWLLLSPYRKQLPAKLFS
EPFQLPQTDGRGIPRDTLRRALGLLAEAGWKPSDAGLLNSAGQPLRFEILLVNPRLERILQPYVENLARIGIQANLRTVD
GAQYKQRLDHYDYDMILMTLVQSLSPGIEQRLYFHSSQVDVKGGRNYAGVANPIVDDLIGKLLAAQTRDEQVAAARAIDR
VLLWNHYTIPNWFISNHRLAYRNRFAHVTTPPYTLGLRAWWLKSLEKSK

Specific function: Unknown

COG id: COG4166

COG function: function code E; ABC-type oligopeptide transport system, periplasmic component

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To H.influenzae hbpA [H]

Homologues:

Organism=Escherichia coli, GI87082063, Length=604, Percent_Identity=39.5695364238411, Blast_Score=436, Evalue=1e-123,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000914 [H]

Pfam domain/function: PF00496 SBP_bac_5 [H]

EC number: NA

Molecular weight: Translated: 69647; Mature: 69647

Theoretical pI: Translated: 9.74; Mature: 9.74

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRALLLLLTCLALSFPALATISESHGYAQFGTLKYPASFTHFDWVNPRAPKGGRIKLMAS
CHHHHHHHHHHHHCCCHHEEECCCCCCEEECEEECCCCCCCCCCCCCCCCCCCEEEEEEC
GTFDTLNPYTFKGTSPSASPGFLQYGISELNEPLMVGTGLYDPSGDEPASSYGLIAESVE
CCCCCCCCEEECCCCCCCCCCHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCEEEEEEE
YSDNNSWVVFNLRKEARFHDGKPITAYDVAFSYRLLIKDGHPQYRTNLQGVKRVDILNRH
ECCCCCEEEEEEHHCCCCCCCCCEEEEEEEEEEEEEEECCCCHHHHCCCHHHHHHHHCCC
RIRFVFEQPNNPLLIMRLGELPVLPQHYWKNRDFKATTFEPPLGSGPYRITQVQPGRQVV
EEEEEEECCCCCEEEEEECCCCCCCHHHHCCCCCEEEECCCCCCCCCEEEEEECCCHHHH
FERVRDWWGAKLPVNQGKYNFNRVEVEFYRDNVVAFEAFKVGEFDFYIEHQAKNWANGYQ
HHHHHHHCCCCCCCCCCCCCCEEEEEEEEECCEEEEEEEEECCEEEEEEECCCCCCCCCC
FPAMLRGDIIRAEIPHQIPTQTQALFMNGRRATFADQRVREALGLMFDFEWTNRALFYGA
CCHHHCCCEEEECCCCCCCCCCHHEEECCCCCHHHHHHHHHHHCCEEEEECCCCEEEEEE
YRRSESYYPNSEFSATGKPEGGEWLLLSPYRKQLPAKLFSEPFQLPQTDGRGIPRDTLRR
HHCCCCCCCCCCCCCCCCCCCCCEEEECCHHHHCCHHHHCCCCCCCCCCCCCCCHHHHHH
ALGLLAEAGWKPSDAGLLNSAGQPLRFEILLVNPRLERILQPYVENLARIGIQANLRTVD
HHHHHHHCCCCCCCCCHHHCCCCCEEEEEEEECHHHHHHHHHHHHHHHHCCCEEEEEECC
GAQYKQRLDHYDYDMILMTLVQSLSPGIEQRLYFHSSQVDVKGGRNYAGVANPIVDDLIG
CHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHEEECCEEEECCCCCCCCCCHHHHHHHHH
KLLAAQTRDEQVAAARAIDRVLLWNHYTIPNWFISNHRLAYRNRFAHVTTPPYTLGLRAW
HHHHHCCCCHHHHHHHHHHHHHEECCCCCCCEEECCCEEEECCCEEEECCCCHHHHHHHH
WLKSLEKSK
HHHHHHCCC
>Mature Secondary Structure
MRALLLLLTCLALSFPALATISESHGYAQFGTLKYPASFTHFDWVNPRAPKGGRIKLMAS
CHHHHHHHHHHHHCCCHHEEECCCCCCEEECEEECCCCCCCCCCCCCCCCCCCEEEEEEC
GTFDTLNPYTFKGTSPSASPGFLQYGISELNEPLMVGTGLYDPSGDEPASSYGLIAESVE
CCCCCCCCEEECCCCCCCCCCHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCEEEEEEE
YSDNNSWVVFNLRKEARFHDGKPITAYDVAFSYRLLIKDGHPQYRTNLQGVKRVDILNRH
ECCCCCEEEEEEHHCCCCCCCCCEEEEEEEEEEEEEEECCCCHHHHCCCHHHHHHHHCCC
RIRFVFEQPNNPLLIMRLGELPVLPQHYWKNRDFKATTFEPPLGSGPYRITQVQPGRQVV
EEEEEEECCCCCEEEEEECCCCCCCHHHHCCCCCEEEECCCCCCCCCEEEEEECCCHHHH
FERVRDWWGAKLPVNQGKYNFNRVEVEFYRDNVVAFEAFKVGEFDFYIEHQAKNWANGYQ
HHHHHHHCCCCCCCCCCCCCCEEEEEEEEECCEEEEEEEEECCEEEEEEECCCCCCCCCC
FPAMLRGDIIRAEIPHQIPTQTQALFMNGRRATFADQRVREALGLMFDFEWTNRALFYGA
CCHHHCCCEEEECCCCCCCCCCHHEEECCCCCHHHHHHHHHHHCCEEEEECCCCEEEEEE
YRRSESYYPNSEFSATGKPEGGEWLLLSPYRKQLPAKLFSEPFQLPQTDGRGIPRDTLRR
HHCCCCCCCCCCCCCCCCCCCCCEEEECCHHHHCCHHHHCCCCCCCCCCCCCCCHHHHHH
ALGLLAEAGWKPSDAGLLNSAGQPLRFEILLVNPRLERILQPYVENLARIGIQANLRTVD
HHHHHHHCCCCCCCCCHHHCCCCCEEEEEEEECHHHHHHHHHHHHHHHHCCCEEEEEECC
GAQYKQRLDHYDYDMILMTLVQSLSPGIEQRLYFHSSQVDVKGGRNYAGVANPIVDDLIG
CHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHEEECCEEEECCCCCCCCCCHHHHHHHHH
KLLAAQTRDEQVAAARAIDRVLLWNHYTIPNWFISNHRLAYRNRFAHVTTPPYTLGLRAW
HHHHHCCCCHHHHHHHHHHHHHEECCCCCCCEEECCCEEEECCCEEEECCCCHHHHHHHH
WLKSLEKSK
HHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; oligopeptides [Periplasm]; H2O [C]

Specific reaction: ATP + oligopeptides [Periplasm] + H2O = ADP + phosphate + oligopeptides [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503; 9097040 [H]