| Definition | Aeromonas salmonicida subsp. salmonicida A449, complete genome. |
|---|---|
| Accession | NC_009348 |
| Length | 4,702,402 |
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The map label for this gene is purR [H]
Identifier: 145300955
GI number: 145300955
Start: 4395093
End: 4396100
Strand: Direct
Name: purR [H]
Synonym: ASA_4107
Alternate gene names: 145300955
Gene position: 4395093-4396100 (Clockwise)
Preceding gene: 145300953
Following gene: 145300959
Centisome position: 93.46
GC content: 64.68
Gene sequence:
>1008_bases ATGAACGACACCCGCAAACGCCGCCCTACACTGCAGGACATAGCCGACCTGACCGGGGTCACCAAGATGACCGTCAGCCG CTATCTGCGCGATCCCCATGCCGTGGCCGAGGGCACCCGTGAGCGGATCGCCGCCGCAGTGGAAGAGCTGGGCTATATCC CCAACCGGGCGCCGGACATTCTCTCCAACGCCACCAGCAAGGCGATCGGCATCCTGATCCCCTCCCTCTCCAACCAGGTC TTCTCCGCCGTGGTGCACGGCATAGAGTCGGTGACCCGGCCTGCCGGCTACCAGACCCTGCTCGCTCACTACGGCTACAG CCCGGAGCGGGAAGAGGAGCAGGTGGCCTCCCTGCTCTCCTATCACGTGGACGGCCTGATCCTCTCCGACAGCCAGCACA CGGAGCGCACCCGCAAGATGATCGCCACCGCCGGCATTCCTGTGGTGGAAACCATGGATCTGCCGCAAGCCCCCATCGAC ATGGTAGTGGGGATGGATCACAGGGCCGCCGCCCGGGCCATGGTAACAGAGATGCTGCGCCGGGGCCGACGCAAGCTGGT TTACCTGGGGGCGCGGCTCGACGTGCGCACCCAGCTGAGGATGGAGGGTTACTACCAGGCGATGGCCGATTTCGGCCTGA CAGGTCAGCACCTGCTGACCGAGCAATCCTCCAGCTTCACCCTGGGTGGTCAACTGCTGGATCAGGCGCTGGTGCGCTAT CCCGACCTCGATGGCCTCTTCTGTACCAATGACGACTTGGCGGTTGGCGCCCTGCTGCAGTGTCAGGCAAAGTGGATACC CGTCCCCCAGCAGATCGCCATCGCTGGCAGCAACGCCCTCGACATAGGCCATGCCATGACCCCCAAGCTGGCCAGTATCG TCACACCACGCAAGGAGATAGGCAGTGAGGCGGCGACCATGCTGCTGGCCCGACTCAGCGGCCAGCCACTGCCCGACACC CGCAAGGATATGGGCTTCTCCCTCTATGTCGGGGAGAGCCTGGGCTGA
Upstream 100 bases:
>100_bases CCCTTGATCATCCGAGTCATCCTCTACTGATGGCGTCATATGCTGACTTTGTTAAACAAAAACGGTAATGTTACGTGTAA CATTCCTGCCGGATCCCCAG
Downstream 100 bases:
>100_bases CGCTTGCGCGAAGGGAGGGTCAAAGCCTGACGGTACGCACGCGAAGCAGTCTGATCCGAAACGCCAGCCGATTTATCCTC CTGATTCAAAGGCAAAAAAA
Product: Pur operon repressor
Products: NA
Alternate protein names: Gluconate utilization system GNT-I transcriptional repressor [H]
Number of amino acids: Translated: 335; Mature: 335
Protein sequence:
>335_residues MNDTRKRRPTLQDIADLTGVTKMTVSRYLRDPHAVAEGTRERIAAAVEELGYIPNRAPDILSNATSKAIGILIPSLSNQV FSAVVHGIESVTRPAGYQTLLAHYGYSPEREEEQVASLLSYHVDGLILSDSQHTERTRKMIATAGIPVVETMDLPQAPID MVVGMDHRAAARAMVTEMLRRGRRKLVYLGARLDVRTQLRMEGYYQAMADFGLTGQHLLTEQSSSFTLGGQLLDQALVRY PDLDGLFCTNDDLAVGALLQCQAKWIPVPQQIAIAGSNALDIGHAMTPKLASIVTPRKEIGSEAATMLLARLSGQPLPDT RKDMGFSLYVGESLG
Sequences:
>Translated_335_residues MNDTRKRRPTLQDIADLTGVTKMTVSRYLRDPHAVAEGTRERIAAAVEELGYIPNRAPDILSNATSKAIGILIPSLSNQV FSAVVHGIESVTRPAGYQTLLAHYGYSPEREEEQVASLLSYHVDGLILSDSQHTERTRKMIATAGIPVVETMDLPQAPID MVVGMDHRAAARAMVTEMLRRGRRKLVYLGARLDVRTQLRMEGYYQAMADFGLTGQHLLTEQSSSFTLGGQLLDQALVRY PDLDGLFCTNDDLAVGALLQCQAKWIPVPQQIAIAGSNALDIGHAMTPKLASIVTPRKEIGSEAATMLLARLSGQPLPDT RKDMGFSLYVGESLG >Mature_335_residues MNDTRKRRPTLQDIADLTGVTKMTVSRYLRDPHAVAEGTRERIAAAVEELGYIPNRAPDILSNATSKAIGILIPSLSNQV FSAVVHGIESVTRPAGYQTLLAHYGYSPEREEEQVASLLSYHVDGLILSDSQHTERTRKMIATAGIPVVETMDLPQAPID MVVGMDHRAAARAMVTEMLRRGRRKLVYLGARLDVRTQLRMEGYYQAMADFGLTGQHLLTEQSSSFTLGGQLLDQALVRY PDLDGLFCTNDDLAVGALLQCQAKWIPVPQQIAIAGSNALDIGHAMTPKLASIVTPRKEIGSEAATMLLARLSGQPLPDT RKDMGFSLYVGESLG
Specific function: Negative regulator for the gluconate utilization system GNT-I, the gntUKR operon [H]
COG id: COG1609
COG function: function code K; Transcriptional regulators
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 HTH lacI-type DNA-binding domain [H]
Homologues:
Organism=Escherichia coli, GI48994940, Length=330, Percent_Identity=56.6666666666667, Blast_Score=379, Evalue=1e-106, Organism=Escherichia coli, GI1790715, Length=331, Percent_Identity=51.0574018126888, Blast_Score=327, Evalue=9e-91, Organism=Escherichia coli, GI1790369, Length=317, Percent_Identity=26.813880126183, Blast_Score=124, Evalue=1e-29, Organism=Escherichia coli, GI1790194, Length=319, Percent_Identity=28.5266457680251, Blast_Score=110, Evalue=1e-25, Organism=Escherichia coli, GI1789068, Length=310, Percent_Identity=25.8064516129032, Blast_Score=105, Evalue=5e-24, Organism=Escherichia coli, GI1789202, Length=318, Percent_Identity=26.1006289308176, Blast_Score=103, Evalue=1e-23, Organism=Escherichia coli, GI1787580, Length=324, Percent_Identity=26.5432098765432, Blast_Score=99, Evalue=4e-22, Organism=Escherichia coli, GI1787948, Length=308, Percent_Identity=25.6493506493506, Blast_Score=96, Evalue=2e-21, Organism=Escherichia coli, GI1787906, Length=256, Percent_Identity=26.171875, Blast_Score=94, Evalue=1e-20, Organism=Escherichia coli, GI1790689, Length=319, Percent_Identity=26.3322884012539, Blast_Score=87, Evalue=2e-18, Organism=Escherichia coli, GI1788474, Length=316, Percent_Identity=24.6835443037975, Blast_Score=86, Evalue=3e-18, Organism=Escherichia coli, GI1786268, Length=312, Percent_Identity=28.8461538461538, Blast_Score=82, Evalue=6e-17, Organism=Escherichia coli, GI1786540, Length=316, Percent_Identity=25.9493670886076, Blast_Score=79, Evalue=6e-16,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000843 - InterPro: IPR010982 - InterPro: IPR001761 [H]
Pfam domain/function: PF00356 LacI; PF00532 Peripla_BP_1 [H]
EC number: NA
Molecular weight: Translated: 36570; Mature: 36570
Theoretical pI: Translated: 6.72; Mature: 6.72
Prosite motif: PS00356 HTH_LACI_1 ; PS50932 HTH_LACI_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 3.9 %Met (Translated Protein) 4.5 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 3.9 %Met (Mature Protein) 4.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNDTRKRRPTLQDIADLTGVTKMTVSRYLRDPHAVAEGTRERIAAAVEELGYIPNRAPDI CCCCHHCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHH LSNATSKAIGILIPSLSNQVFSAVVHGIESVTRPAGYQTLLAHYGYSPEREEEQVASLLS HHHHHHHHHHEEECHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCHHHHHHHHHHH YHVDGLILSDSQHTERTRKMIATAGIPVVETMDLPQAPIDMVVGMDHRAAARAMVTEMLR HHHCCEEECCCHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHCCCCHHHHHHHHHHHHHH RGRRKLVYLGARLDVRTQLRMEGYYQAMADFGLTGQHLLTEQSSSFTLGGQLLDQALVRY CCCCEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCEEECHHHHHHHHHHC PDLDGLFCTNDDLAVGALLQCQAKWIPVPQQIAIAGSNALDIGHAMTPKLASIVTPRKEI CCCCCEEECCCCHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCHHHHHHCCCHHHH GSEAATMLLARLSGQPLPDTRKDMGFSLYVGESLG HHHHHHHHHHHHCCCCCCCHHHHCCEEEEECCCCC >Mature Secondary Structure MNDTRKRRPTLQDIADLTGVTKMTVSRYLRDPHAVAEGTRERIAAAVEELGYIPNRAPDI CCCCHHCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHH LSNATSKAIGILIPSLSNQVFSAVVHGIESVTRPAGYQTLLAHYGYSPEREEEQVASLLS HHHHHHHHHHEEECHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCHHHHHHHHHHH YHVDGLILSDSQHTERTRKMIATAGIPVVETMDLPQAPIDMVVGMDHRAAARAMVTEMLR HHHCCEEECCCHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHCCCCHHHHHHHHHHHHHH RGRRKLVYLGARLDVRTQLRMEGYYQAMADFGLTGQHLLTEQSSSFTLGGQLLDQALVRY CCCCEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCEEECHHHHHHHHHHC PDLDGLFCTNDDLAVGALLQCQAKWIPVPQQIAIAGSNALDIGHAMTPKLASIVTPRKEI CCCCCEEECCCCHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCHHHHHHCCCHHHH GSEAATMLLARLSGQPLPDTRKDMGFSLYVGESLG HHHHHHHHHHHHCCCCCCCHHHHCCEEEEECCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: DNA [C]
Specific reaction: Protein + DNA = Protein-DNA [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 12471157 [H]