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The map label for this gene is rnfC [H]

Identifier: 145299426

GI number: 145299426

Start: 2649127

End: 2651388

Strand: Direct

Name: rnfC [H]

Synonym: ASA_2487

Alternate gene names: 145299426

Gene position: 2649127-2651388 (Clockwise)

Preceding gene: 145299425

Following gene: 145299427

Centisome position: 56.34

GC content: 64.15

Gene sequence:

>2262_bases
ATGCAGCATCTGCTCGAACGCATCAAAGCCGGCACTCTGTGGGATTTTCACGGCGGCATTCACCCTCCCGAGAACAAGCA
CCAATCCAGCCTGACACCCGTGGTGGACGCGGGTCTGCCGCCCCAGCTCATCATACCGGTGCGCCAGCACGCAGGGCCGG
CCGGCGATCTGCTGGTACAGATCGGCGACAAGGTCAAGAAGGGTCAGCCACTGACCCGCTATGACAAGGGCCGCATAGTG
CCCGTGCACGCCTCGACCTCGGGCACCATCACCACCATCGGCCACCATACTGTGGCGCACCCCTCGGGTCTCGATGATCT
CTGCATTACCCTGACGCCGGATGGGGAGGATGCCTGGGGTGAGCACCAGGGCAAGCCAGACTACTGGAATCTGGATCGGG
GCGAACTGCTTGAGCGCATCCAGCAGGCCGGCATTGCGGGTCTGGGCGGCGCCGTGTTCCCGACTCACAGCAAGCTGGAC
GGTCGCGGTCAGCTCACCGAGATCCTGATCGTCAACGGGCTGGAGTGCGAACCTTATATCAGCACAGATGATCGGCTGAT
GCAGGAGTATGCCGACGAGATCATGGATGGCATCCGGGTGCTCAAGCATCTGCTCAAACCCAAGTTGACCCTGATCGGGG
TGGAAGACAACAAACCCGCCGCCATTGCCGAACTGACCCGCCACGCCACCGATGAGGACGTGCTGGTCAAGACGGTGCCG
ACCAAGTACCCCTCGGGCGGTGCCAAGCAGACCATAGAGCTGCTTACCGGCCGTCAGGTGCCCAAAGGTGGGCGGGCGGT
GGACATGGGCATCATGGTGCTCAACGTGGCAACCGTGTTCGCCATCAAGCGCGCCATCATCGACGGCGAGCCGCTCATCT
CCCGCATCGTCACCCTGACTGGTGACGCCTTCAAGAAGCCAGGCAATGCTTGGGTACTGCTGGGCACACCAGTACGCTGG
CTGTTGCAGCGTTTTGAGCTGCAACCCGAGGCGGACCAGAGGGTCATCATGGGGGGCCCCATGATGGGCTTCACCCTGCC
CCACGCCATGGTCCCCGTGGTCAAGGCCACCAACTGCCTGCTCTCCCCGACCCGTGCCGAGCTGCCGCCCCCCGGTCCCG
AACAAGCCTGCATCCGTTGCAGCGCCTGCGCCGATGCCTGCCCGGCCAATTTGCTGCCCCAGGAACTCTACTGGTACAGC
CGCGCCAAGGAGTACGACAAGGCCGAAGGGCTCAACCTGTTCGACTGTATCGAGTGCGGCGCTTGCGCATGGGTCTGCCC
GAGTGAGATCCCCCTGGTGCAGTACTACAAGATTGCCAAGGATGATATTCGCGAGGCCCGTGCCGAGGCCGAAAAAGCCG
AGCGTGCCAAGCAGCGTTTCGAGGCCAAGCAGGCCCGCTTCGAGCGGGAAAAAGCGGCCCGAGAAGCCCGCCATGCCGAA
GCTGCGGCCCAGCGCCGCCAGGCCATGACGGCCAGTGGAGGGGAAGATCCCGTCGCTGCCGCCCTCGCCCGCATCAAAGC
AAAGCAGGAAGTCACGGCCAGCGCTGTTGGCGAGCAGCCAGACAACAGCGCCATGATTGCCGCCCGCGAGGCGCGCAAGC
AGGAGGCCCTCGCTCGGCGCGCAGCCGCCAACAGCGGTGAACCTGCTGACGTTGCCGCCGTCGTTGCGCCAACGCCAGAG
GCGCAGGATCCGAAAAAGGCCGCTATCGCAGCAGCCCTTGCTCGTGCCAAGGCCAAAAAAGCAGCTCAAGCGGCGGATGA
AGACGTCGCCAAACCCGAGGCTATGGCTAACGAGGCCCAGCCGCTCAGCGAACCCGCAGCTGCCGAGGTTGACCCCAAGA
AAGCAGCCATTGCTGCTGCCATCGCACGGGCCAAAGCCAAGAAGGCCGCGCAAGCTGCGGATGAAAACGTCGCCGAGCCT
GAGGCTATCGCTAGCGAGGCCGAGCCGGTCAGCGAACCCCCACTGGCGACTGTCGAGGTCGACCCCAAGAAAGCAGCCAT
TGCCGCCGCCATTGCACGCGCCAAAGCAAAAAAAGCAGCGCAAGCGGCGGATGAAAACGTCGCCGAGCCTGAGGCGACGG
CTAGCGAGGCCCAGCCGGTAAGCGAATCCGCACCGGCGACTGCCGAGGTCGACCCCAAGAAAGCAGCCATTGCCGCCGCC
ATCGCCCGTGCCAAGGCCAAGAAGCTGGCAGCAGAGGCTGCCGCACAAGGCCTGACCACCCAAGCACAGTCACCTTCTCC
ATCGCCAGACAAGAGCCACTGA

Upstream 100 bases:

>100_bases
TCGAAATGATCCCTGTGCCGACCACGGTCGACAACTGGAAGTGGGATCTGGCCAGCGTCGCCATTCCGGTCAAGATAGTG
GAATAAACAGCGGAGTAACC

Downstream 100 bases:

>100_bases
TCCATGTTCAATATCGCGAGTGCGCCGTTTGCTCATAACCGCAAACAGACCCAAACCCTGATGTTGCTGGTGATCCTGGC
TTGCCTGCCCGGCCTGCTGG

Product: electron transport complex protein RnfC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 753; Mature: 753

Protein sequence:

>753_residues
MQHLLERIKAGTLWDFHGGIHPPENKHQSSLTPVVDAGLPPQLIIPVRQHAGPAGDLLVQIGDKVKKGQPLTRYDKGRIV
PVHASTSGTITTIGHHTVAHPSGLDDLCITLTPDGEDAWGEHQGKPDYWNLDRGELLERIQQAGIAGLGGAVFPTHSKLD
GRGQLTEILIVNGLECEPYISTDDRLMQEYADEIMDGIRVLKHLLKPKLTLIGVEDNKPAAIAELTRHATDEDVLVKTVP
TKYPSGGAKQTIELLTGRQVPKGGRAVDMGIMVLNVATVFAIKRAIIDGEPLISRIVTLTGDAFKKPGNAWVLLGTPVRW
LLQRFELQPEADQRVIMGGPMMGFTLPHAMVPVVKATNCLLSPTRAELPPPGPEQACIRCSACADACPANLLPQELYWYS
RAKEYDKAEGLNLFDCIECGACAWVCPSEIPLVQYYKIAKDDIREARAEAEKAERAKQRFEAKQARFEREKAAREARHAE
AAAQRRQAMTASGGEDPVAAALARIKAKQEVTASAVGEQPDNSAMIAAREARKQEALARRAAANSGEPADVAAVVAPTPE
AQDPKKAAIAAALARAKAKKAAQAADEDVAKPEAMANEAQPLSEPAAAEVDPKKAAIAAAIARAKAKKAAQAADENVAEP
EAIASEAEPVSEPPLATVEVDPKKAAIAAAIARAKAKKAAQAADENVAEPEATASEAQPVSESAPATAEVDPKKAAIAAA
IARAKAKKLAAEAAAQGLTTQAQSPSPSPDKSH

Sequences:

>Translated_753_residues
MQHLLERIKAGTLWDFHGGIHPPENKHQSSLTPVVDAGLPPQLIIPVRQHAGPAGDLLVQIGDKVKKGQPLTRYDKGRIV
PVHASTSGTITTIGHHTVAHPSGLDDLCITLTPDGEDAWGEHQGKPDYWNLDRGELLERIQQAGIAGLGGAVFPTHSKLD
GRGQLTEILIVNGLECEPYISTDDRLMQEYADEIMDGIRVLKHLLKPKLTLIGVEDNKPAAIAELTRHATDEDVLVKTVP
TKYPSGGAKQTIELLTGRQVPKGGRAVDMGIMVLNVATVFAIKRAIIDGEPLISRIVTLTGDAFKKPGNAWVLLGTPVRW
LLQRFELQPEADQRVIMGGPMMGFTLPHAMVPVVKATNCLLSPTRAELPPPGPEQACIRCSACADACPANLLPQELYWYS
RAKEYDKAEGLNLFDCIECGACAWVCPSEIPLVQYYKIAKDDIREARAEAEKAERAKQRFEAKQARFEREKAAREARHAE
AAAQRRQAMTASGGEDPVAAALARIKAKQEVTASAVGEQPDNSAMIAAREARKQEALARRAAANSGEPADVAAVVAPTPE
AQDPKKAAIAAALARAKAKKAAQAADEDVAKPEAMANEAQPLSEPAAAEVDPKKAAIAAAIARAKAKKAAQAADENVAEP
EAIASEAEPVSEPPLATVEVDPKKAAIAAAIARAKAKKAAQAADENVAEPEATASEAQPVSESAPATAEVDPKKAAIAAA
IARAKAKKLAAEAAAQGLTTQAQSPSPSPDKSH
>Mature_753_residues
MQHLLERIKAGTLWDFHGGIHPPENKHQSSLTPVVDAGLPPQLIIPVRQHAGPAGDLLVQIGDKVKKGQPLTRYDKGRIV
PVHASTSGTITTIGHHTVAHPSGLDDLCITLTPDGEDAWGEHQGKPDYWNLDRGELLERIQQAGIAGLGGAVFPTHSKLD
GRGQLTEILIVNGLECEPYISTDDRLMQEYADEIMDGIRVLKHLLKPKLTLIGVEDNKPAAIAELTRHATDEDVLVKTVP
TKYPSGGAKQTIELLTGRQVPKGGRAVDMGIMVLNVATVFAIKRAIIDGEPLISRIVTLTGDAFKKPGNAWVLLGTPVRW
LLQRFELQPEADQRVIMGGPMMGFTLPHAMVPVVKATNCLLSPTRAELPPPGPEQACIRCSACADACPANLLPQELYWYS
RAKEYDKAEGLNLFDCIECGACAWVCPSEIPLVQYYKIAKDDIREARAEAEKAERAKQRFEAKQARFEREKAAREARHAE
AAAQRRQAMTASGGEDPVAAALARIKAKQEVTASAVGEQPDNSAMIAAREARKQEALARRAAANSGEPADVAAVVAPTPE
AQDPKKAAIAAALARAKAKKAAQAADEDVAKPEAMANEAQPLSEPAAAEVDPKKAAIAAAIARAKAKKAAQAADENVAEP
EAIASEAEPVSEPPLATVEVDPKKAAIAAAIARAKAKKAAQAADENVAEPEATASEAQPVSESAPATAEVDPKKAAIAAA
IARAKAKKLAAEAAAQGLTTQAQSPSPSPDKSH

Specific function: May be part of a membrane complex involved in electron transport [H]

COG id: COG4656

COG function: function code C; Predicted NADH:ubiquinone oxidoreductase, subunit RnfC

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein [H]

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 4Fe-4S ferredoxin-type domains [H]

Homologues:

Organism=Escherichia coli, GI1787916, Length=574, Percent_Identity=54.1811846689895, Blast_Score=615, Evalue=1e-177,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017896
- InterPro:   IPR017900
- InterPro:   IPR010208
- InterPro:   IPR012285
- InterPro:   IPR009051
- InterPro:   IPR011538
- InterPro:   IPR019554 [H]

Pfam domain/function: PF01512 Complex1_51K; PF10531 SLBB [H]

EC number: NA

Molecular weight: Translated: 79867; Mature: 79867

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: PS00198 4FE4S_FERREDOXIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQHLLERIKAGTLWDFHGGIHPPENKHQSSLTPVVDAGLPPQLIIPVRQHAGPAGDLLVQ
CHHHHHHHHCCCEEECCCCCCCCCCCCCCCCCCHHCCCCCCCEEEECHHCCCCHHHHHHH
IGDKVKKGQPLTRYDKGRIVPVHASTSGTITTIGHHTVAHPSGLDDLCITLTPDGEDAWG
HHHHHHCCCCCCCCCCCCEEEEECCCCCCEEECCCCEECCCCCCCCEEEEECCCCCCCCC
EHQGKPDYWNLDRGELLERIQQAGIAGLGGAVFPTHSKLDGRGQLTEILIVNGLECEPYI
CCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCC
STDDRLMQEYADEIMDGIRVLKHLLKPKLTLIGVEDNKPAAIAELTRHATDEDVLVKTVP
CCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHCCCCCCEEEEECC
TKYPSGGAKQTIELLTGRQVPKGGRAVDMGIMVLNVATVFAIKRAIIDGEPLISRIVTLT
CCCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHC
GDAFKKPGNAWVLLGTPVRWLLQRFELQPEADQRVIMGGPMMGFTLPHAMVPVVKATNCL
CHHHCCCCCEEEEECCCHHHHHHHHCCCCCCCCEEEECCCCHHHHCHHHHHHHHHHHHHH
LSPTRAELPPPGPEQACIRCSACADACPANLLPQELYWYSRAKEYDKAEGLNLFDCIECG
CCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHC
ACAWVCPSEIPLVQYYKIAKDDIREARAEAEKAERAKQRFEAKQARFEREKAAREARHAE
CEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AAAQRRQAMTASGGEDPVAAALARIKAKQEVTASAVGEQPDNSAMIAAREARKQEALARR
HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEHHHHHHHHHHHHHH
AAANSGEPADVAAVVAPTPEAQDPKKAAIAAALARAKAKKAAQAADEDVAKPEAMANEAQ
HHCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCC
PLSEPAAAEVDPKKAAIAAAIARAKAKKAAQAADENVAEPEAIASEAEPVSEPPLATVEV
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCCCCCEEEEEE
DPKKAAIAAAIARAKAKKAAQAADENVAEPEATASEAQPVSESAPATAEVDPKKAAIAAA
CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCCCCCCCCCHHHHHHHHH
IARAKAKKLAAEAAAQGLTTQAQSPSPSPDKSH
HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MQHLLERIKAGTLWDFHGGIHPPENKHQSSLTPVVDAGLPPQLIIPVRQHAGPAGDLLVQ
CHHHHHHHHCCCEEECCCCCCCCCCCCCCCCCCHHCCCCCCCEEEECHHCCCCHHHHHHH
IGDKVKKGQPLTRYDKGRIVPVHASTSGTITTIGHHTVAHPSGLDDLCITLTPDGEDAWG
HHHHHHCCCCCCCCCCCCEEEEECCCCCCEEECCCCEECCCCCCCCEEEEECCCCCCCCC
EHQGKPDYWNLDRGELLERIQQAGIAGLGGAVFPTHSKLDGRGQLTEILIVNGLECEPYI
CCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCC
STDDRLMQEYADEIMDGIRVLKHLLKPKLTLIGVEDNKPAAIAELTRHATDEDVLVKTVP
CCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHCCCCCCEEEEECC
TKYPSGGAKQTIELLTGRQVPKGGRAVDMGIMVLNVATVFAIKRAIIDGEPLISRIVTLT
CCCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHC
GDAFKKPGNAWVLLGTPVRWLLQRFELQPEADQRVIMGGPMMGFTLPHAMVPVVKATNCL
CHHHCCCCCEEEEECCCHHHHHHHHCCCCCCCCEEEECCCCHHHHCHHHHHHHHHHHHHH
LSPTRAELPPPGPEQACIRCSACADACPANLLPQELYWYSRAKEYDKAEGLNLFDCIECG
CCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHC
ACAWVCPSEIPLVQYYKIAKDDIREARAEAEKAERAKQRFEAKQARFEREKAAREARHAE
CEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AAAQRRQAMTASGGEDPVAAALARIKAKQEVTASAVGEQPDNSAMIAAREARKQEALARR
HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEHHHHHHHHHHHHHH
AAANSGEPADVAAVVAPTPEAQDPKKAAIAAALARAKAKKAAQAADEDVAKPEAMANEAQ
HHCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCC
PLSEPAAAEVDPKKAAIAAAIARAKAKKAAQAADENVAEPEAIASEAEPVSEPPLATVEV
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCCCCCEEEEEE
DPKKAAIAAAIARAKAKKAAQAADENVAEPEATASEAQPVSESAPATAEVDPKKAAIAAA
CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCCCCCCCCCHHHHHHHHH
IARAKAKKLAAEAAAQGLTTQAQSPSPSPDKSH
HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: 4Fe-4S clusters [C]

Metal ions: Iron-Sulfur [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10952301 [H]