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The map label for this gene is rnfB [H]

Identifier: 145299425

GI number: 145299425

Start: 2648549

End: 2649112

Strand: Direct

Name: rnfB [H]

Synonym: ASA_2486

Alternate gene names: 145299425

Gene position: 2648549-2649112 (Clockwise)

Preceding gene: 145299424

Following gene: 145299426

Centisome position: 56.32

GC content: 59.4

Gene sequence:

>564_bases
ATGACTCACATACTCTTTGCCGTTCTGGTACTGGCCCTGCTGGCCCTTGCCTTCGGAATCATTCTGGGCTTTGCCGCCGT
CAAGTTTTACGTGGAAGCCGATCCCATCGTCGATCAGCTTGACGCCCTGTTGCCGCAGACCCAGTGCGGCCAGTGCGGTT
ACCCTGGCTGCAAACCTTATGCCGAGGCGCTGGCCAATGGCGATCAGATCAACAAGTGCGTGCCCGGTGGCGATGCCACC
ATGCGCAAGATAGCCGACCTGATGGGGGTCGACCCTCAACCGCTGGGCAGTGCCGAGGCCGCCATCCCGGTCAAGAAAGT
CGCCTTCATCCATGAAGATCAATGCATCGGCTGCACCAAGTGCATCCAGGCCTGTCCGGTCGATGCCATCGTCGGTGCCA
CCAAGGCAATGCACACCGTCATCACAGACGAGTGCACCGGCTGCGATCTCTGTGTCGATCCCTGCCCGACCGACTGTATC
GAAATGATCCCTGTGCCGACCACGGTCGACAACTGGAAGTGGGATCTGGCCAGCGTCGCCATTCCGGTCAAGATAGTGGA
ATAA

Upstream 100 bases:

>100_bases
GTTCCCACTCCGTTTCGCGGTGTGTCGATTGCCATGGTCACCGCCGGCCTGATGTCGCTGGCCTTTATGGGCTTTACCGG
CCTTATCAAGATATAGCGCT

Downstream 100 bases:

>100_bases
ACAGCGGAGTAACCATGCAGCATCTGCTCGAACGCATCAAAGCCGGCACTCTGTGGGATTTTCACGGCGGCATTCACCCT
CCCGAGAACAAGCACCAATC

Product: electron transport complex protein RnfB

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 187; Mature: 186

Protein sequence:

>187_residues
MTHILFAVLVLALLALAFGIILGFAAVKFYVEADPIVDQLDALLPQTQCGQCGYPGCKPYAEALANGDQINKCVPGGDAT
MRKIADLMGVDPQPLGSAEAAIPVKKVAFIHEDQCIGCTKCIQACPVDAIVGATKAMHTVITDECTGCDLCVDPCPTDCI
EMIPVPTTVDNWKWDLASVAIPVKIVE

Sequences:

>Translated_187_residues
MTHILFAVLVLALLALAFGIILGFAAVKFYVEADPIVDQLDALLPQTQCGQCGYPGCKPYAEALANGDQINKCVPGGDAT
MRKIADLMGVDPQPLGSAEAAIPVKKVAFIHEDQCIGCTKCIQACPVDAIVGATKAMHTVITDECTGCDLCVDPCPTDCI
EMIPVPTTVDNWKWDLASVAIPVKIVE
>Mature_186_residues
THILFAVLVLALLALAFGIILGFAAVKFYVEADPIVDQLDALLPQTQCGQCGYPGCKPYAEALANGDQINKCVPGGDATM
RKIADLMGVDPQPLGSAEAAIPVKKVAFIHEDQCIGCTKCIQACPVDAIVGATKAMHTVITDECTGCDLCVDPCPTDCIE
MIPVPTTVDNWKWDLASVAIPVKIVE

Specific function: May be part of a membrane complex involved in electron transport [H]

COG id: COG2878

COG function: function code C; Predicted NADH:ubiquinone oxidoreductase, subunit RnfB

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 4Fe-4S ferredoxin-type domains [H]

Homologues:

Organism=Escherichia coli, GI1787915, Length=188, Percent_Identity=62.7659574468085, Blast_Score=248, Evalue=2e-67,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001450
- InterPro:   IPR017896
- InterPro:   IPR017900
- InterPro:   IPR010207
- InterPro:   IPR016463
- InterPro:   IPR007202
- InterPro:   IPR012285 [H]

Pfam domain/function: PF00037 Fer4; PF04060 FeS [H]

EC number: NA

Molecular weight: Translated: 19774; Mature: 19643

Theoretical pI: Translated: 4.22; Mature: 4.22

Prosite motif: PS00198 4FE4S_FERREDOXIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

7.0 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
9.6 %Cys+Met (Translated Protein)
7.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
9.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTHILFAVLVLALLALAFGIILGFAAVKFYVEADPIVDQLDALLPQTQCGQCGYPGCKPY
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCHH
AEALANGDQINKCVPGGDATMRKIADLMGVDPQPLGSAEAAIPVKKVAFIHEDQCIGCTK
HHHHCCCCHHCCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHCHHHHHHHHCCCCCCCHHH
CIQACPVDAIVGATKAMHTVITDECTGCDLCVDPCPTDCIEMIPVPTTVDNWKWDLASVA
HHHHCCHHHHHHHHHHHHHHHHCCCCCCCEECCCCCHHHHHHCCCCCCCCCCCCHHHHEE
IPVKIVE
EEEEECC
>Mature Secondary Structure 
THILFAVLVLALLALAFGIILGFAAVKFYVEADPIVDQLDALLPQTQCGQCGYPGCKPY
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCHH
AEALANGDQINKCVPGGDATMRKIADLMGVDPQPLGSAEAAIPVKKVAFIHEDQCIGCTK
HHHHCCCCHHCCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHCHHHHHHHHCCCCCCCHHH
CIQACPVDAIVGATKAMHTVITDECTGCDLCVDPCPTDCIEMIPVPTTVDNWKWDLASVA
HHHHCCHHHHHHHHHHHHHHHHCCCCCCCEECCCCCHHHHHHCCCCCCCCCCCCHHHHEE
IPVKIVE
EEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA