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The map label for this gene is rnfD [H]

Identifier: 145299427

GI number: 145299427

Start: 2651392

End: 2652444

Strand: Direct

Name: rnfD [H]

Synonym: ASA_2488

Alternate gene names: 145299427

Gene position: 2651392-2652444 (Clockwise)

Preceding gene: 145299426

Following gene: 145299428

Centisome position: 56.38

GC content: 61.54

Gene sequence:

>1053_bases
ATGTTCAATATCGCGAGTGCGCCGTTTGCTCATAACCGCAAACAGACCCAAACCCTGATGTTGCTGGTGATCCTGGCTTG
CCTGCCCGGCCTGCTGGCCCAGACCTGGTTCTTTGGCTGGGGTTCCTTCATCCAGATCCTGCTGGCGCTGGTGACGGCAC
TGGGGGCCGAGGCGCTGGTGCTCCGCTTGCGCCGCCGTCCCATCAAGCCCGCCCTGATGGATGGCAGTGCCGCCCTGACC
GCCGTGCTGATTGGCCTCTCTTTGCCCCCCCTGCTGCCCTGGTGGATGCTGGTACTGGGCACCGCCTTTGCCATCATCAT
TGCCAAGCACCTTTATGGCGGCCTGGGCCAGAACCTGTTCAACCCGGCCATGGTGGCCTATGTGTTGCTGTTGGTCTCCT
TCCCCGTGCAAATGACCAGCTGGTTGCCGCCAGACACCATTCGCGCCTATGACATCGGCTTTGGCGATGCAGCGTCCGTC
ATCTTTACCGGCTTCAGCCTGGATGGCTACAGCATGGCGCAGCTCAAGCAGGGGGTGGATGGCCTCACCATGGCTACGCC
ACTCGATACCCTGAAGACAGGGCTGAATCAGGGGCTCACCACGGGTGAAGTGATGAGCCACGCCGTATTCGAGGGCTGGG
GCGGCATCGGCTGGAGCTGGGTCAACCTGGGTTACCTGCTGGGCGGCCTGTTCCTGCTGCAGCAAAAAGTGATCAACTGG
CGTATTCCGGGTGCCATCCTGGGCTCCTTGTTGCTGGCCGCAACCCTGGGTTATCTGATGACGCCGGATGCCACCGCCAC
CCCCATGTTCCATCTGTTCAGCGGGGCCACCATGCTGGGGGCCTTCTTCATCGCTACCGATCCGGTCAGCGCCAGCACCA
CGCCCCGTGGCCGTCTGGTATATGGCGTACTGATTGGCGTGCTGGTCTACCTTATCCGTCGCTTTGGCGGTTACCCTGAT
GCCTTCGCCTTCGCCGTGCTGCTGGCCAACTTGTGTGTTCCGCTGATCGACAGCCTGACACGTCCCAAGGTCTATGGAGC
ACGTCGTAAATGA

Upstream 100 bases:

>100_bases
CCGTGCCAAGGCCAAGAAGCTGGCAGCAGAGGCTGCCGCACAAGGCCTGACCACCCAAGCACAGTCACCTTCTCCATCGC
CAGACAAGAGCCACTGATCC

Downstream 100 bases:

>100_bases
GTAACATCATGCGGATAACCCACCTCTGTGTGACCACACGGAACGACAGCCTGACACGCCTCAGGGGATATGGAGCACGT
CGCAAATGATCCCGGCGCAA

Product: electron transport complex protein RnfD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 350; Mature: 350

Protein sequence:

>350_residues
MFNIASAPFAHNRKQTQTLMLLVILACLPGLLAQTWFFGWGSFIQILLALVTALGAEALVLRLRRRPIKPALMDGSAALT
AVLIGLSLPPLLPWWMLVLGTAFAIIIAKHLYGGLGQNLFNPAMVAYVLLLVSFPVQMTSWLPPDTIRAYDIGFGDAASV
IFTGFSLDGYSMAQLKQGVDGLTMATPLDTLKTGLNQGLTTGEVMSHAVFEGWGGIGWSWVNLGYLLGGLFLLQQKVINW
RIPGAILGSLLLAATLGYLMTPDATATPMFHLFSGATMLGAFFIATDPVSASTTPRGRLVYGVLIGVLVYLIRRFGGYPD
AFAFAVLLANLCVPLIDSLTRPKVYGARRK

Sequences:

>Translated_350_residues
MFNIASAPFAHNRKQTQTLMLLVILACLPGLLAQTWFFGWGSFIQILLALVTALGAEALVLRLRRRPIKPALMDGSAALT
AVLIGLSLPPLLPWWMLVLGTAFAIIIAKHLYGGLGQNLFNPAMVAYVLLLVSFPVQMTSWLPPDTIRAYDIGFGDAASV
IFTGFSLDGYSMAQLKQGVDGLTMATPLDTLKTGLNQGLTTGEVMSHAVFEGWGGIGWSWVNLGYLLGGLFLLQQKVINW
RIPGAILGSLLLAATLGYLMTPDATATPMFHLFSGATMLGAFFIATDPVSASTTPRGRLVYGVLIGVLVYLIRRFGGYPD
AFAFAVLLANLCVPLIDSLTRPKVYGARRK
>Mature_350_residues
MFNIASAPFAHNRKQTQTLMLLVILACLPGLLAQTWFFGWGSFIQILLALVTALGAEALVLRLRRRPIKPALMDGSAALT
AVLIGLSLPPLLPWWMLVLGTAFAIIIAKHLYGGLGQNLFNPAMVAYVLLLVSFPVQMTSWLPPDTIRAYDIGFGDAASV
IFTGFSLDGYSMAQLKQGVDGLTMATPLDTLKTGLNQGLTTGEVMSHAVFEGWGGIGWSWVNLGYLLGGLFLLQQKVINW
RIPGAILGSLLLAATLGYLMTPDATATPMFHLFSGATMLGAFFIATDPVSASTTPRGRLVYGVLIGVLVYLIRRFGGYPD
AFAFAVLLANLCVPLIDSLTRPKVYGARRK

Specific function: May be part of a membrane complex involved in electron transport [H]

COG id: COG4658

COG function: function code C; Predicted NADH:ubiquinone oxidoreductase, subunit RnfD

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nqrB/rnfD family [H]

Homologues:

Organism=Escherichia coli, GI1787917, Length=350, Percent_Identity=59.4285714285714, Blast_Score=419, Evalue=1e-118,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011303
- InterPro:   IPR004338 [H]

Pfam domain/function: PF03116 NQR2_RnfD_RnfE [H]

EC number: NA

Molecular weight: Translated: 37693; Mature: 37693

Theoretical pI: Translated: 9.94; Mature: 9.94

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFNIASAPFAHNRKQTQTLMLLVILACLPGLLAQTWFFGWGSFIQILLALVTALGAEALV
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LRLRRRPIKPALMDGSAALTAVLIGLSLPPLLPWWMLVLGTAFAIIIAKHLYGGLGQNLF
HHHHHCCCCCHHCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
NPAMVAYVLLLVSFPVQMTSWLPPDTIRAYDIGFGDAASVIFTGFSLDGYSMAQLKQGVD
CHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCHHHHHHCCCCCCCCHHHHHHCCCC
GLTMATPLDTLKTGLNQGLTTGEVMSHAVFEGWGGIGWSWVNLGYLLGGLFLLQQKVINW
CCCHHCCHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHC
RIPGAILGSLLLAATLGYLMTPDATATPMFHLFSGATMLGAFFIATDPVSASTTPRGRLV
CCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHH
YGVLIGVLVYLIRRFGGYPDAFAFAVLLANLCVPLIDSLTRPKVYGARRK
HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
>Mature Secondary Structure
MFNIASAPFAHNRKQTQTLMLLVILACLPGLLAQTWFFGWGSFIQILLALVTALGAEALV
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LRLRRRPIKPALMDGSAALTAVLIGLSLPPLLPWWMLVLGTAFAIIIAKHLYGGLGQNLF
HHHHHCCCCCHHCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
NPAMVAYVLLLVSFPVQMTSWLPPDTIRAYDIGFGDAASVIFTGFSLDGYSMAQLKQGVD
CHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCHHHHHHCCCCCCCCHHHHHHCCCC
GLTMATPLDTLKTGLNQGLTTGEVMSHAVFEGWGGIGWSWVNLGYLLGGLFLLQQKVINW
CCCHHCCHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHC
RIPGAILGSLLLAATLGYLMTPDATATPMFHLFSGATMLGAFFIATDPVSASTTPRGRLV
CCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHH
YGVLIGVLVYLIRRFGGYPDAFAFAVLLANLCVPLIDSLTRPKVYGARRK
HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA