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The map label for this gene is sodA [H]

Identifier: 145296931

GI number: 145296931

Start: 3144882

End: 3145484

Strand: Direct

Name: sodA [H]

Synonym: cgR_2831

Alternate gene names: 145296931

Gene position: 3144882-3145484 (Clockwise)

Preceding gene: 145296927

Following gene: 145296933

Centisome position: 94.89

GC content: 56.72

Gene sequence:

>603_bases
ATGGCTGTATACGAACTCCCAGAACTCGACTACGCATACGACGCTCTCGAGCCACACATCGCCGCTGAAATCATGGAGCT
TCACCACTCCAAGCACCACGCAACCTACGTTGCAGGCGCAAACGCAGCACTCGAGGCACTAGAGAAGGCACGCGAAGAGG
GCACCAACCCTGACCAGATCCGTGCACTGTCCAAGAACCTTGCATTCAACCTCGGTGGACACACCAACCACTCCGTTTTC
TGGAAGAACCTCTCCCCTAACGGTGGCGGCGAGCCTACTGGCGAACTGGCTGAGGCAATCAACCGCGACTTCGGTTCTTT
CGCTAAGTTCCAGGATCACTTCAACTCCGCAGCACTTGGCCTCCACGGCTCCGGCTGGGCAGTTCTCGGCTTCGACCACA
TCGCCGGTCGCCTGGTTATCGAGCAGCTCACCGACCAGCAGGGCAACATCTCCGTCGACATCACCCCACTTCTGATGCTC
GATATGTGGGAGCACGCTTTCTACCTGCAGTACAAGAACGTTAAGGCTGATTACGTCAAGGCTGTTTGGAACGTCTTCAA
CTGGGACGACGTAGCAGCACGCTTCGCAGCAGCTTCCAAGTAA

Upstream 100 bases:

>100_bases
TGGGAAGTGTCGCACCAAGTACTTTTGCGAAGCGCCATCTGACGGATTTTCAAAAGATGTATATGCTCGGTGCGGAAACC
TACGAAAGGATTTTTTACCC

Downstream 100 bases:

>100_bases
GCATTTTTAGTACGTGCAATAACCACTCTGGTCTTCCAGGGTGGTTTTTTGATGCCCTTCAGGTGTTTTTTCGGGCAGGG
CTGGGTGAGGTCCGTCATAG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 200; Mature: 199

Protein sequence:

>200_residues
MAVYELPELDYAYDALEPHIAAEIMELHHSKHHATYVAGANAALEALEKAREEGTNPDQIRALSKNLAFNLGGHTNHSVF
WKNLSPNGGGEPTGELAEAINRDFGSFAKFQDHFNSAALGLHGSGWAVLGFDHIAGRLVIEQLTDQQGNISVDITPLLML
DMWEHAFYLQYKNVKADYVKAVWNVFNWDDVAARFAAASK

Sequences:

>Translated_200_residues
MAVYELPELDYAYDALEPHIAAEIMELHHSKHHATYVAGANAALEALEKAREEGTNPDQIRALSKNLAFNLGGHTNHSVF
WKNLSPNGGGEPTGELAEAINRDFGSFAKFQDHFNSAALGLHGSGWAVLGFDHIAGRLVIEQLTDQQGNISVDITPLLML
DMWEHAFYLQYKNVKADYVKAVWNVFNWDDVAARFAAASK
>Mature_199_residues
AVYELPELDYAYDALEPHIAAEIMELHHSKHHATYVAGANAALEALEKAREEGTNPDQIRALSKNLAFNLGGHTNHSVFW
KNLSPNGGGEPTGELAEAINRDFGSFAKFQDHFNSAALGLHGSGWAVLGFDHIAGRLVIEQLTDQQGNISVDITPLLMLD
MWEHAFYLQYKNVKADYVKAVWNVFNWDDVAARFAAASK

Specific function: Destroys radicals which are normally produced within the cells and which are toxic to biological systems [H]

COG id: COG0605

COG function: function code P; Superoxide dismutase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the iron/manganese superoxide dismutase family [H]

Homologues:

Organism=Homo sapiens, GI67782307, Length=200, Percent_Identity=55, Blast_Score=222, Evalue=1e-58,
Organism=Homo sapiens, GI67782305, Length=200, Percent_Identity=55, Blast_Score=222, Evalue=1e-58,
Organism=Homo sapiens, GI67782309, Length=200, Percent_Identity=43, Blast_Score=155, Evalue=2e-38,
Organism=Escherichia coli, GI1790342, Length=204, Percent_Identity=48.0392156862745, Blast_Score=168, Evalue=2e-43,
Organism=Escherichia coli, GI1787946, Length=195, Percent_Identity=42.5641025641026, Blast_Score=157, Evalue=4e-40,
Organism=Caenorhabditis elegans, GI17506561, Length=198, Percent_Identity=45.4545454545455, Blast_Score=177, Evalue=4e-45,
Organism=Caenorhabditis elegans, GI17569479, Length=197, Percent_Identity=45.1776649746193, Blast_Score=172, Evalue=1e-43,
Organism=Saccharomyces cerevisiae, GI6321796, Length=203, Percent_Identity=43.8423645320197, Blast_Score=166, Evalue=2e-42,
Organism=Drosophila melanogaster, GI17136812, Length=198, Percent_Identity=45.959595959596, Blast_Score=187, Evalue=3e-48,

Paralogues:

None

Copy number: 2980 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 20 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001189
- InterPro:   IPR019833
- InterPro:   IPR019832
- InterPro:   IPR019831 [H]

Pfam domain/function: PF02777 Sod_Fe_C; PF00081 Sod_Fe_N [H]

EC number: =1.15.1.1 [H]

Molecular weight: Translated: 22121; Mature: 21990

Theoretical pI: Translated: 5.22; Mature: 5.22

Prosite motif: PS00088 SOD_MN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAVYELPELDYAYDALEPHIAAEIMELHHSKHHATYVAGANAALEALEKAREEGTNPDQI
CCCCCCCCCCHHHHHHCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHCCCCHHHH
RALSKNLAFNLGGHTNHSVFWKNLSPNGGGEPTGELAEAINRDFGSFAKFQDHFNSAALG
HHHHHHHEEECCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEC
LHGSGWAVLGFDHIAGRLVIEQLTDQQGNISVDITPLLMLDMWEHAFYLQYKNVKADYVK
CCCCCEEEEEHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHHEEEECCCHHHHHH
AVWNVFNWDDVAARFAAASK
HHHHHCCHHHHHHHHHHCCC
>Mature Secondary Structure 
AVYELPELDYAYDALEPHIAAEIMELHHSKHHATYVAGANAALEALEKAREEGTNPDQI
CCCCCCCCCHHHHHHCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHCCCCHHHH
RALSKNLAFNLGGHTNHSVFWKNLSPNGGGEPTGELAEAINRDFGSFAKFQDHFNSAALG
HHHHHHHEEECCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEC
LHGSGWAVLGFDHIAGRLVIEQLTDQQGNISVDITPLLMLDMWEHAFYLQYKNVKADYVK
CCCCCEEEEEHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHHEEEECCCHHHHHH
AVWNVFNWDDVAARFAAASK
HHHHHCCHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 14602910; 7852575 [H]