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The map label for this gene is ydcO [H]

Identifier: 145296377

GI number: 145296377

Start: 2524273

End: 2525517

Strand: Direct

Name: ydcO [H]

Synonym: cgR_2291

Alternate gene names: 145296377

Gene position: 2524273-2525517 (Clockwise)

Preceding gene: 145296376

Following gene: 145296379

Centisome position: 76.17

GC content: 55.34

Gene sequence:

>1245_bases
ATGGCAAGCTCAGTATTATTAGCTGTCGAAAAACCAGAACTCCCCCGGCCTACTTTCGCTGAGATCAAACGAGACCTCGG
CCCCCAAGAAATTGGCAACGGGCTTGTCGCACTGATTTTCTCCGCATCGGGTCCCATCGCAGTAATCTTGGCTGCTGCGG
CAGCGGGAAACCTTTCGCCTGATCAAACATCTTCATGGATCTTCGGAGCATTTTTAGGCAACGGACTGCTCACGCTGTGG
CTTACCTATTTGTATCGCAGTCCGCAGGCGTACTTCTGGACGATTCCCGGAACTGTCATCGTGGGCGACTCACTTACCCA
CTTAAGTTTCGCTGAAGTTATCGGCGCATACCTTGTTACCGGCGTGGTGGTGTTTGCGCTCGGATGGACCGGCCTCATCG
GGCGAATCATGGCGGTACTGCCACCCACCATCGTGATGGCCATGGTCGCAGGCATCTTCCTCCGCTTCGGACTCGACCTC
ATCGACGCCAGCGTCACCGACCCGCTCATTGCACTTCCAATGGTCATTGTATTTGTGGCATTGAGCATGAGCCCCCGCAT
AGCAAGCATCGCACCACCAGTTGCAGTAGCCGCAGTAGTGGGAATCATCGTTGCCATCACATCCGGCAAACTAGCGCCCG
GAATTTTAGACAACGGAATTATCTCCCGCCCCGTCTTTACAGCCCCTGAATTTTCCTTCGCCGCCATCATGGAACTCGTT
GTTCCCTTGGCCATCACCGTAGTTATTGTCCAAAACGGCCAAGGCGTCGCAGTACTTAAAGCAGCAGGACACCGCCCCGG
AGTAAACCTCGCAGCTGCAGCCTCCGGACTGTGGTCCCTACCCATGGCGTTGATCGGCAACATCACCACCTGTCTCACCG
GCCCCACCAACGCACTGATCGTAGCCGGAGCAAAATCACACAGGCACTACACCGCAGCAATGGTCACCGCCATCGGCGCC
ATCATCGTGGGCCTATTCTCCCCCACCTTCGTCGGATTCATGCTGGCCATGCCCATATCCTTCATCGCTGCACTCGCCGG
CATCGCCATGCTCACCCCACTCAAAAACGCCTTCATCGCAGGATTCTCCGGTGTTTATTCCACTGGCGCACTAGTCTGCT
TTCTAGTCACAGTGTCAGAAATTAGCATCCTCGGAATCACCGCCCCGTTTTGGGGAATTGTCTTCGGATGGCTCGTCGGA
TGGCTGCTGGATAGCAAGCTTCTAGAAAACAAAAAACGGGCTTAG

Upstream 100 bases:

>100_bases
AACCACTTGCACGTGTCTAACCCCAATTAATTCGAAACAAGGAAGCTTCGGCTTCCTTTTTCGGCATTTCACTAGCATTT
AGAATTTAAGGAATTAGTTA

Downstream 100 bases:

>100_bases
CTAACTTTTTGAGGAAACCAACGGCAGCGTGATACGAACCTTCGTTCCACGTGGCTGATTGGGTTCATAAGTAATGTGCC
CACCGTGTCGCTGCACAATA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 414; Mature: 413

Protein sequence:

>414_residues
MASSVLLAVEKPELPRPTFAEIKRDLGPQEIGNGLVALIFSASGPIAVILAAAAAGNLSPDQTSSWIFGAFLGNGLLTLW
LTYLYRSPQAYFWTIPGTVIVGDSLTHLSFAEVIGAYLVTGVVVFALGWTGLIGRIMAVLPPTIVMAMVAGIFLRFGLDL
IDASVTDPLIALPMVIVFVALSMSPRIASIAPPVAVAAVVGIIVAITSGKLAPGILDNGIISRPVFTAPEFSFAAIMELV
VPLAITVVIVQNGQGVAVLKAAGHRPGVNLAAAASGLWSLPMALIGNITTCLTGPTNALIVAGAKSHRHYTAAMVTAIGA
IIVGLFSPTFVGFMLAMPISFIAALAGIAMLTPLKNAFIAGFSGVYSTGALVCFLVTVSEISILGITAPFWGIVFGWLVG
WLLDSKLLENKKRA

Sequences:

>Translated_414_residues
MASSVLLAVEKPELPRPTFAEIKRDLGPQEIGNGLVALIFSASGPIAVILAAAAAGNLSPDQTSSWIFGAFLGNGLLTLW
LTYLYRSPQAYFWTIPGTVIVGDSLTHLSFAEVIGAYLVTGVVVFALGWTGLIGRIMAVLPPTIVMAMVAGIFLRFGLDL
IDASVTDPLIALPMVIVFVALSMSPRIASIAPPVAVAAVVGIIVAITSGKLAPGILDNGIISRPVFTAPEFSFAAIMELV
VPLAITVVIVQNGQGVAVLKAAGHRPGVNLAAAASGLWSLPMALIGNITTCLTGPTNALIVAGAKSHRHYTAAMVTAIGA
IIVGLFSPTFVGFMLAMPISFIAALAGIAMLTPLKNAFIAGFSGVYSTGALVCFLVTVSEISILGITAPFWGIVFGWLVG
WLLDSKLLENKKRA
>Mature_413_residues
ASSVLLAVEKPELPRPTFAEIKRDLGPQEIGNGLVALIFSASGPIAVILAAAAAGNLSPDQTSSWIFGAFLGNGLLTLWL
TYLYRSPQAYFWTIPGTVIVGDSLTHLSFAEVIGAYLVTGVVVFALGWTGLIGRIMAVLPPTIVMAMVAGIFLRFGLDLI
DASVTDPLIALPMVIVFVALSMSPRIASIAPPVAVAAVVGIIVAITSGKLAPGILDNGIISRPVFTAPEFSFAAIMELVV
PLAITVVIVQNGQGVAVLKAAGHRPGVNLAAAASGLWSLPMALIGNITTCLTGPTNALIVAGAKSHRHYTAAMVTAIGAI
IVGLFSPTFVGFMLAMPISFIAALAGIAMLTPLKNAFIAGFSGVYSTGALVCFLVTVSEISILGITAPFWGIVFGWLVGW
LLDSKLLENKKRA

Specific function: Unknown

COG id: COG3135

COG function: function code Q; Uncharacterized protein involved in benzoate metabolism

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI87081909, Length=395, Percent_Identity=30.379746835443, Blast_Score=150, Evalue=1e-37,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004711 [H]

Pfam domain/function: PF03594 BenE [H]

EC number: NA

Molecular weight: Translated: 42904; Mature: 42772

Theoretical pI: Translated: 8.67; Mature: 8.67

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MASSVLLAVEKPELPRPTFAEIKRDLGPQEIGNGLVALIFSASGPIAVILAAAAAGNLSP
CCCCEEEEECCCCCCCCCHHHHHHCCCHHHHCCCCEEEEEECCCCHHHHHHHHHCCCCCC
DQTSSWIFGAFLGNGLLTLWLTYLYRSPQAYFWTIPGTVIVGDSLTHLSFAEVIGAYLVT
CCCCHHHHHHHHHCHHHHHHHHHHHCCCCEEEEECCCEEEECCCCHHHHHHHHHHHHHHH
GVVVFALGWTGLIGRIMAVLPPTIVMAMVAGIFLRFGLDLIDASVTDPLIALPMVIVFVA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
LSMSPRIASIAPPVAVAAVVGIIVAITSGKLAPGILDNGIISRPVFTAPEFSFAAIMELV
HCCCCCHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
VPLAITVVIVQNGQGVAVLKAAGHRPGVNLAAAASGLWSLPMALIGNITTCLTGPTNALI
HHHHHEEEEEECCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCHHHEECCCCCEEE
VAGAKSHRHYTAAMVTAIGAIIVGLFSPTFVGFMLAMPISFIAALAGIAMLTPLKNAFIA
EECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GFSGVYSTGALVCFLVTVSEISILGITAPFWGIVFGWLVGWLLDSKLLENKKRA
HHHHHHHHHHHHHHHHHHHHHHEEEECHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
ASSVLLAVEKPELPRPTFAEIKRDLGPQEIGNGLVALIFSASGPIAVILAAAAAGNLSP
CCCEEEEECCCCCCCCCHHHHHHCCCHHHHCCCCEEEEEECCCCHHHHHHHHHCCCCCC
DQTSSWIFGAFLGNGLLTLWLTYLYRSPQAYFWTIPGTVIVGDSLTHLSFAEVIGAYLVT
CCCCHHHHHHHHHCHHHHHHHHHHHCCCCEEEEECCCEEEECCCCHHHHHHHHHHHHHHH
GVVVFALGWTGLIGRIMAVLPPTIVMAMVAGIFLRFGLDLIDASVTDPLIALPMVIVFVA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
LSMSPRIASIAPPVAVAAVVGIIVAITSGKLAPGILDNGIISRPVFTAPEFSFAAIMELV
HCCCCCHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
VPLAITVVIVQNGQGVAVLKAAGHRPGVNLAAAASGLWSLPMALIGNITTCLTGPTNALI
HHHHHEEEEEECCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCHHHEECCCCCEEE
VAGAKSHRHYTAAMVTAIGAIIVGLFSPTFVGFMLAMPISFIAALAGIAMLTPLKNAFIA
EECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GFSGVYSTGALVCFLVTVSEISILGITAPFWGIVFGWLVGWLLDSKLLENKKRA
HHHHHHHHHHHHHHHHHHHHHHEEEECHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]