| Definition | Corynebacterium glutamicum R chromosome, complete genome. |
|---|---|
| Accession | NC_009342 |
| Length | 3,314,179 |
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The map label for this gene is ydfG [C]
Identifier: 145296164
GI number: 145296164
Start: 2299035
End: 2299751
Strand: Reverse
Name: ydfG [C]
Synonym: cgR_2083
Alternate gene names: 145296164
Gene position: 2299751-2299035 (Counterclockwise)
Preceding gene: 145296165
Following gene: 145296159
Centisome position: 69.39
GC content: 54.39
Gene sequence:
>717_bases GTGGCTGAAAATGGGCAAAAAGTTGCGGTCGTAACTGGTGGATCAAGCGGCATTGGCGCAGCTTCAGCTCGAGCATTGGC AGCGGACGGTTGGAAAGTAATTGTGGCAGCACGTCGCCTCGAGCGCTTGGAAGCACTCGCTCAGGAAATCGGCGGAACTG CAGTGGCACTCGATGTCACTGACCAAGAATCAGTCAACGCATTTTCAGTCACCGTTGGGGAAGTCGATCTGTTGGTCAAC AACGCAGGCGGTGCCAAAGGCCTAGACAGCATCCATGACGCCAACATTGATGATTGGACCTGGATGTACGAAACCAACGT GCTGGGCACTTTGCGCGTCACCAAAGCCCTCATGGACGGCCTCATCGCACGCGACGGTCACGTGATCAACATTGGTTCCA TTGCAGGAGAAAATCCCTACATTGGCGGAGCTGGATACAACGCAGCAAAATTCGGTGTAGCAGCATTCAACCGTGTGCTT CGCTTGGAAACCCACCAGCAGACCCTTCGCGTGTCTGAGATCGATCCAGGTCGAGTTGCCACGGAAGAATTCTCCCTCGT TCGTTTCGGCGGAGATAAAGAACGCGCAGAAGCAGTCTATGACGACGTCCTCAACCTCACCGCTGAAGACATCGCAGAGT CTGTGCGTTGGGTCGCGAGCCTTCCAAAGCATATGAACATTGACCGCATGCGTATTACGCCTCGCGATCAGGTCTAA
Upstream 100 bases:
>100_bases TCTTATGAGACGTAGGGGGTGGAGTCAGGGGTAGGACGTGTCCAGTCCAAGTGGCATGCTGGTTTCTGTACAAAACGTAG GTGACTTTAAGGAGAATGCA
Downstream 100 bases:
>100_bases AACCCGCACTCTTTTGAAATCCTTTTGTTCCGCATCCTTGATTGGGTGATGGGGCAGGGGGATTTTTGTTTGAGCGGCTT AAAGGTGGGGCGCGGTCTGG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 238; Mature: 237
Protein sequence:
>238_residues MAENGQKVAVVTGGSSGIGAASARALAADGWKVIVAARRLERLEALAQEIGGTAVALDVTDQESVNAFSVTVGEVDLLVN NAGGAKGLDSIHDANIDDWTWMYETNVLGTLRVTKALMDGLIARDGHVINIGSIAGENPYIGGAGYNAAKFGVAAFNRVL RLETHQQTLRVSEIDPGRVATEEFSLVRFGGDKERAEAVYDDVLNLTAEDIAESVRWVASLPKHMNIDRMRITPRDQV
Sequences:
>Translated_238_residues MAENGQKVAVVTGGSSGIGAASARALAADGWKVIVAARRLERLEALAQEIGGTAVALDVTDQESVNAFSVTVGEVDLLVN NAGGAKGLDSIHDANIDDWTWMYETNVLGTLRVTKALMDGLIARDGHVINIGSIAGENPYIGGAGYNAAKFGVAAFNRVL RLETHQQTLRVSEIDPGRVATEEFSLVRFGGDKERAEAVYDDVLNLTAEDIAESVRWVASLPKHMNIDRMRITPRDQV >Mature_237_residues AENGQKVAVVTGGSSGIGAASARALAADGWKVIVAARRLERLEALAQEIGGTAVALDVTDQESVNAFSVTVGEVDLLVNN AGGAKGLDSIHDANIDDWTWMYETNVLGTLRVTKALMDGLIARDGHVINIGSIAGENPYIGGAGYNAAKFGVAAFNRVLR LETHQQTLRVSEIDPGRVATEEFSLVRFGGDKERAEAVYDDVLNLTAEDIAESVRWVASLPKHMNIDRMRITPRDQV
Specific function: Unknown
COG id: COG4221
COG function: function code R; Short-chain alcohol dehydrogenase of unknown specificity
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]
Homologues:
Organism=Homo sapiens, GI109715829, Length=250, Percent_Identity=35.2, Blast_Score=124, Evalue=1e-28, Organism=Homo sapiens, GI40254992, Length=213, Percent_Identity=35.2112676056338, Blast_Score=91, Evalue=1e-18, Organism=Homo sapiens, GI20149619, Length=191, Percent_Identity=33.5078534031414, Blast_Score=90, Evalue=2e-18, Organism=Homo sapiens, GI7657478, Length=217, Percent_Identity=33.6405529953917, Blast_Score=87, Evalue=1e-17, Organism=Homo sapiens, GI32483357, Length=207, Percent_Identity=30.4347826086957, Blast_Score=80, Evalue=2e-15, Organism=Homo sapiens, GI33667109, Length=244, Percent_Identity=29.0983606557377, Blast_Score=79, Evalue=3e-15, Organism=Homo sapiens, GI5031737, Length=195, Percent_Identity=33.8461538461538, Blast_Score=77, Evalue=2e-14, Organism=Homo sapiens, GI19743808, Length=183, Percent_Identity=31.6939890710383, Blast_Score=76, Evalue=2e-14, Organism=Homo sapiens, GI7705925, Length=181, Percent_Identity=30.3867403314917, Blast_Score=74, Evalue=8e-14, Organism=Homo sapiens, GI150247226, Length=191, Percent_Identity=33.5078534031414, Blast_Score=74, Evalue=1e-13, Organism=Homo sapiens, GI40548397, Length=183, Percent_Identity=33.3333333333333, Blast_Score=73, Evalue=2e-13, Organism=Homo sapiens, GI214010158, Length=183, Percent_Identity=33.3333333333333, Blast_Score=73, Evalue=2e-13, Organism=Homo sapiens, GI214010156, Length=183, Percent_Identity=33.3333333333333, Blast_Score=73, Evalue=2e-13, Organism=Homo sapiens, GI22758144, Length=183, Percent_Identity=33.3333333333333, Blast_Score=73, Evalue=2e-13, Organism=Homo sapiens, GI19923817, Length=191, Percent_Identity=28.2722513089005, Blast_Score=73, Evalue=2e-13, Organism=Homo sapiens, GI7706318, Length=189, Percent_Identity=33.8624338624339, Blast_Score=72, Evalue=3e-13, Organism=Homo sapiens, GI126723191, Length=191, Percent_Identity=29.8429319371728, Blast_Score=70, Evalue=2e-12, Organism=Homo sapiens, GI22507405, Length=186, Percent_Identity=33.3333333333333, Blast_Score=69, Evalue=3e-12, Organism=Homo sapiens, GI4557649, Length=183, Percent_Identity=28.9617486338798, Blast_Score=69, Evalue=5e-12, Organism=Homo sapiens, GI210032110, Length=169, Percent_Identity=28.9940828402367, Blast_Score=67, Evalue=1e-11, Organism=Homo sapiens, GI59889578, Length=164, Percent_Identity=31.0975609756098, Blast_Score=65, Evalue=6e-11, Organism=Escherichia coli, GI1787820, Length=237, Percent_Identity=40.5063291139241, Blast_Score=177, Evalue=7e-46, Organism=Escherichia coli, GI1787335, Length=225, Percent_Identity=34.6666666666667, Blast_Score=92, Evalue=3e-20, Organism=Escherichia coli, GI87082100, Length=210, Percent_Identity=33.3333333333333, Blast_Score=80, Evalue=1e-16, Organism=Escherichia coli, GI87082160, Length=188, Percent_Identity=31.3829787234043, Blast_Score=73, Evalue=2e-14, Organism=Escherichia coli, GI1786701, Length=184, Percent_Identity=29.3478260869565, Blast_Score=72, Evalue=4e-14, Organism=Escherichia coli, GI1789057, Length=242, Percent_Identity=30.1652892561983, Blast_Score=66, Evalue=2e-12, Organism=Escherichia coli, GI2367175, Length=234, Percent_Identity=27.3504273504274, Blast_Score=65, Evalue=3e-12, Organism=Escherichia coli, GI1789208, Length=214, Percent_Identity=28.9719626168224, Blast_Score=64, Evalue=1e-11, Organism=Escherichia coli, GI1787905, Length=191, Percent_Identity=30.3664921465969, Blast_Score=63, Evalue=1e-11, Organism=Caenorhabditis elegans, GI17560332, Length=247, Percent_Identity=32.7935222672065, Blast_Score=98, Evalue=3e-21, Organism=Caenorhabditis elegans, GI17562910, Length=208, Percent_Identity=31.7307692307692, Blast_Score=88, Evalue=3e-18, Organism=Caenorhabditis elegans, GI71994604, Length=235, Percent_Identity=28.936170212766, Blast_Score=85, Evalue=3e-17, Organism=Caenorhabditis elegans, GI17562908, Length=191, Percent_Identity=34.0314136125654, Blast_Score=82, Evalue=2e-16, Organism=Caenorhabditis elegans, GI17559104, Length=254, Percent_Identity=30.7086614173228, Blast_Score=81, Evalue=6e-16, Organism=Caenorhabditis elegans, GI17560150, Length=196, Percent_Identity=30.6122448979592, Blast_Score=79, Evalue=1e-15, Organism=Caenorhabditis elegans, GI71994600, Length=234, Percent_Identity=27.3504273504274, Blast_Score=79, Evalue=2e-15, Organism=Caenorhabditis elegans, GI193204405, Length=199, Percent_Identity=33.6683417085427, Blast_Score=79, Evalue=3e-15, Organism=Caenorhabditis elegans, GI17538480, Length=219, Percent_Identity=31.9634703196347, Blast_Score=79, Evalue=3e-15, Organism=Caenorhabditis elegans, GI17563726, Length=251, Percent_Identity=28.2868525896414, Blast_Score=78, Evalue=4e-15, Organism=Caenorhabditis elegans, GI17538486, Length=218, Percent_Identity=29.8165137614679, Blast_Score=77, Evalue=1e-14, Organism=Caenorhabditis elegans, GI17562906, Length=191, Percent_Identity=32.4607329842932, Blast_Score=76, Evalue=1e-14, Organism=Caenorhabditis elegans, GI17531453, Length=212, Percent_Identity=30.6603773584906, Blast_Score=76, Evalue=2e-14, Organism=Caenorhabditis elegans, GI25147288, Length=226, Percent_Identity=29.2035398230088, Blast_Score=75, Evalue=3e-14, Organism=Caenorhabditis elegans, GI71997402, Length=186, Percent_Identity=32.258064516129, Blast_Score=75, Evalue=4e-14, Organism=Caenorhabditis elegans, GI17544670, Length=244, Percent_Identity=28.2786885245902, Blast_Score=74, Evalue=8e-14, Organism=Caenorhabditis elegans, GI17551412, Length=246, Percent_Identity=28.4552845528455, Blast_Score=70, Evalue=1e-12, Organism=Caenorhabditis elegans, GI17562990, Length=198, Percent_Identity=29.2929292929293, Blast_Score=70, Evalue=1e-12, Organism=Caenorhabditis elegans, GI17562904, Length=198, Percent_Identity=29.2929292929293, Blast_Score=70, Evalue=1e-12, Organism=Caenorhabditis elegans, GI17560220, Length=201, Percent_Identity=29.8507462686567, Blast_Score=69, Evalue=2e-12, Organism=Caenorhabditis elegans, GI17555706, Length=234, Percent_Identity=27.3504273504274, Blast_Score=69, Evalue=2e-12, Organism=Caenorhabditis elegans, GI17570069, Length=186, Percent_Identity=30.1075268817204, Blast_Score=69, Evalue=2e-12, Organism=Caenorhabditis elegans, GI72000259, Length=201, Percent_Identity=29.3532338308458, Blast_Score=67, Evalue=8e-12, Organism=Caenorhabditis elegans, GI17560676, Length=202, Percent_Identity=28.2178217821782, Blast_Score=67, Evalue=9e-12, Organism=Caenorhabditis elegans, GI17565030, Length=223, Percent_Identity=27.8026905829596, Blast_Score=64, Evalue=6e-11, Organism=Saccharomyces cerevisiae, GI6323882, Length=248, Percent_Identity=37.9032258064516, Blast_Score=142, Evalue=6e-35, Organism=Saccharomyces cerevisiae, GI6322067, Length=191, Percent_Identity=32.4607329842932, Blast_Score=91, Evalue=1e-19, Organism=Drosophila melanogaster, GI116007236, Length=248, Percent_Identity=34.6774193548387, Blast_Score=115, Evalue=3e-26, Organism=Drosophila melanogaster, GI24641388, Length=248, Percent_Identity=34.2741935483871, Blast_Score=112, Evalue=3e-25, Organism=Drosophila melanogaster, GI23397609, Length=185, Percent_Identity=34.5945945945946, Blast_Score=104, Evalue=6e-23, Organism=Drosophila melanogaster, GI28571387, Length=246, Percent_Identity=31.7073170731707, Blast_Score=94, Evalue=6e-20, Organism=Drosophila melanogaster, GI24663911, Length=252, Percent_Identity=32.5396825396825, Blast_Score=94, Evalue=7e-20, Organism=Drosophila melanogaster, GI281364494, Length=250, Percent_Identity=30.4, Blast_Score=94, Evalue=9e-20, Organism=Drosophila melanogaster, GI21357041, Length=205, Percent_Identity=34.1463414634146, Blast_Score=93, Evalue=1e-19, Organism=Drosophila melanogaster, GI24648693, Length=247, Percent_Identity=31.9838056680162, Blast_Score=92, Evalue=4e-19, Organism=Drosophila melanogaster, GI21355889, Length=247, Percent_Identity=31.9838056680162, Blast_Score=92, Evalue=4e-19, Organism=Drosophila melanogaster, GI116007238, Length=175, Percent_Identity=37.7142857142857, Blast_Score=91, Evalue=7e-19, Organism=Drosophila melanogaster, GI24641232, Length=249, Percent_Identity=32.1285140562249, Blast_Score=90, Evalue=1e-18, Organism=Drosophila melanogaster, GI21358495, Length=190, Percent_Identity=31.5789473684211, Blast_Score=87, Evalue=7e-18, Organism=Drosophila melanogaster, GI116007234, Length=250, Percent_Identity=31.2, Blast_Score=87, Evalue=1e-17, Organism=Drosophila melanogaster, GI24639444, Length=230, Percent_Identity=33.9130434782609, Blast_Score=86, Evalue=2e-17, Organism=Drosophila melanogaster, GI28571526, Length=238, Percent_Identity=28.9915966386555, Blast_Score=86, Evalue=2e-17, Organism=Drosophila melanogaster, GI24648944, Length=232, Percent_Identity=29.7413793103448, Blast_Score=78, Evalue=6e-15, Organism=Drosophila melanogaster, GI24644339, Length=189, Percent_Identity=29.6296296296296, Blast_Score=77, Evalue=1e-14, Organism=Drosophila melanogaster, GI24643142, Length=179, Percent_Identity=30.7262569832402, Blast_Score=75, Evalue=5e-14, Organism=Drosophila melanogaster, GI24580925, Length=194, Percent_Identity=29.8969072164948, Blast_Score=74, Evalue=6e-14, Organism=Drosophila melanogaster, GI17737361, Length=189, Percent_Identity=31.7460317460317, Blast_Score=70, Evalue=9e-13, Organism=Drosophila melanogaster, GI161076933, Length=192, Percent_Identity=30.2083333333333, Blast_Score=70, Evalue=9e-13, Organism=Drosophila melanogaster, GI116007232, Length=177, Percent_Identity=35.0282485875706, Blast_Score=70, Evalue=1e-12, Organism=Drosophila melanogaster, GI24584748, Length=192, Percent_Identity=30.2083333333333, Blast_Score=70, Evalue=1e-12, Organism=Drosophila melanogaster, GI21355631, Length=197, Percent_Identity=30.9644670050761, Blast_Score=69, Evalue=3e-12, Organism=Drosophila melanogaster, GI24640442, Length=188, Percent_Identity=31.9148936170213, Blast_Score=67, Evalue=8e-12,
Paralogues:
None
Copy number: 1300 Molecules/Cell In: Growth-Phase, Minimal-Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002198 - InterPro: IPR002347 - InterPro: IPR016040 [H]
Pfam domain/function: PF00106 adh_short [H]
EC number: 1.-.-.- [C]
Molecular weight: Translated: 25430; Mature: 25299
Theoretical pI: Translated: 4.66; Mature: 4.66
Prosite motif: PS00061 ADH_SHORT
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 1.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAENGQKVAVVTGGSSGIGAASARALAADGWKVIVAARRLERLEALAQEIGGTAVALDVT CCCCCCEEEEEECCCCCCCCHHHHEHHCCCHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC DQESVNAFSVTVGEVDLLVNNAGGAKGLDSIHDANIDDWTWMYETNVLGTLRVTKALMDG CCCCCCEEEEEECEEEEEEECCCCCCCCCHHHCCCCCCEEEEEECCCCHHHHHHHHHHHH LIARDGHVINIGSIAGENPYIGGAGYNAAKFGVAAFNRVLRLETHQQTLRVSEIDPGRVA HHHCCCCEEEECCCCCCCCEECCCCCCHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCEE TEEFSLVRFGGDKERAEAVYDDVLNLTAEDIAESVRWVASLPKHMNIDRMRITPRDQV CCCEEEEEECCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCEEECCCCCCC >Mature Secondary Structure AENGQKVAVVTGGSSGIGAASARALAADGWKVIVAARRLERLEALAQEIGGTAVALDVT CCCCCEEEEEECCCCCCCCHHHHEHHCCCHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC DQESVNAFSVTVGEVDLLVNNAGGAKGLDSIHDANIDDWTWMYETNVLGTLRVTKALMDG CCCCCCEEEEEECEEEEEEECCCCCCCCCHHHCCCCCCEEEEEECCCCHHHHHHHHHHHH LIARDGHVINIGSIAGENPYIGGAGYNAAKFGVAAFNRVLRLETHQQTLRVSEIDPGRVA HHHCCCCEEEECCCCCCCCEECCCCCCHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCEE TEEFSLVRFGGDKERAEAVYDDVLNLTAEDIAESVRWVASLPKHMNIDRMRITPRDQV CCCEEEEEECCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCEEECCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9634230; 12218036 [H]