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The map label for this gene is secD [H]

Identifier: 145295778

GI number: 145295778

Start: 1897240

End: 1899141

Strand: Reverse

Name: secD [H]

Synonym: cgR_1703

Alternate gene names: 145295778

Gene position: 1899141-1897240 (Counterclockwise)

Preceding gene: 145295779

Following gene: 145295777

Centisome position: 57.3

GC content: 56.36

Gene sequence:

>1902_bases
TTGGAATTGAAGGAGACTTTCTTGGCTCGGCAAAAAAAGAGTGCCGCTAGCGCCTGGGAACGATGGCCAAAACGCGCAAT
AGCGTTGTTTGTGCTCATCGTCGTTGGTGTTTATGCGTTGGTGCTGTTGACAGGCGATCGTTCTGCCACACCAAAATTGG
GTATTGATCTGCAAGGCGGAACCCGAGTGACCCTCGTGCCGCAGGGGCAGGATCCAACTCAGGACCAGCTGAATCAGGCA
CGCACCATTCTGGAAAACCGTGTGAACGGCATGGGCGTTTCAGGTGCAAGCGTGGTCGCTGACGGTAACACGCTGGTGAT
CACTGTTCCCGGTGAAGATACCGCACAGGCGCAGTCCCTAGGACAGACCTCCCAGCTGCTGTTCCGTCCCGTTGGTCAGG
CAGGAATGCCCGATATGACCACGTTGATGCCAGAGCTGGAAGAGATGGCCAACAGGTGGGTTGAATACGGCGTCATCACC
GAAGAGCAGGCAAATGCCTCCTTGGAGGAAATGAACACCGCTGTTGCATCGACCACTGCGGTGGAAGGCGAAGAAGCAAC
TGAGCCAGAACCCGTCACCGTGTCGGCGACCCCTATGGATGAGCCAGCCAACTCCATTGAGGCAACACAGCGACGCCAGG
AAATCACGGACATGCTGCGCACCGACCGCCAGTCCACCGATCCCACTGTCCAGATCGCTGCAAGTTCTTTGATGCAGTGC
ACCACTGATGAGATGGATCCTTTGGCCGGCACCGATGATCCACGCCTGCCATTGGTGGCATGTGATCCAGCTGTAGGTGG
CGTGTATGTACTTGATCCTGCACCTTTGCTCAACGGCGAAACCGATGAGGAAAATGGTGCGCGCCTAACCGGTAATGAGA
TCGATACCAACCGTCCCATCACCGGTGGATTCAACGCCCAGTCCGGCCAGATGGAAATCAGCTTTGCCTTCAAATCCGGC
GATGGGGAAGAAGGCTCTGCAACTTGGTCCTCTCTGACCAGCCAGTACCTGCAGCAGCAGATCGCCATCACCTTGGACTC
TCAGGTGATTTCTGCACCCGTTATTCAGTCAGCAACCCCTGTGGGTTCTGCAACATCCATCACCGGTGATTTCACTCAGA
CTGAAGCCCAAGATCTAGCGAACAATCTGCGCTACGGTGCACTGCCACTGAGCTTCGCAGGTGAAAACGGCGAGCGTGGC
GGAACCACCACCACTGTTCCGCCATCACTGGGCGCAGCATCCTTGAAGGCCGGACTGATCGCAGGCATCGTCGGCATCGC
GCTGGTCGCAATCTTCGTGTTCGCCTACTACCGTGTCTTCGGATTCGTTTCCCTGTTCACCCTGTTTGCCGCAGGCGTCT
TGGTCTACGGCCTTCTGGTACTGCTGGGACGTTGGATCGGATACTCCCTGGACCTTGCTGGTATCGCCGGTTTGATCATC
GGTATCGGTACCACCGCCGACTCCTTCGTGGTGTTCTATGAGCGCATCAAGGATGAGATCCGGGAAGGAAGATCCTTTAG
ATCTGCAGCACCTCGTGCATGGGAAAGCGCCAAGCGCACCATCGTCACAGGCAACATGGTCACCTTGCTCGGCGCTATCG
TGATCTACCTGCTCGCGGTCGGCGAAGTCAAGGGCTTTGCCTTCACCCTTGGTCTGACCACCGTATTCGACCTCGTTGTC
ACCTTCCTGATCACCGCACCACTGGTTATCCTGGCATCACGCAATCCATCCTTTGCTAAGCCATCGGTCAACGGCATGGG
ACGAGTGATGAAGCTTGTTGAGGAGCGCCGCGCCAACGGTGAATTGGATGAGCCTGAGTACCTGAAAAAGATCCATGCCA
AGAATGCGACAGCGGAAAAGCCTGCACCTGGCACCGATACGAACCAAGAGGAGGAGAAGTAG

Upstream 100 bases:

>100_bases
CTTTGCCTTTCTCGCTCGTGTCGCACTCACCCAAGCCACCTGGCGCGGGTGAGTGGCGCATGGAGTGGGTGGGCGTCGAC
AAGCGTGGTTGTCTGGTTGA

Downstream 100 bases:

>100_bases
CCATGACTGATTCCCAGACTGAATCACTGTCAACTCAGAGCGTAAAACCAGCCAAAAAACGCAGTTGGTTTAACAGCCTC
TACACCGGTGACGGCGGCAT

Product: preprotein translocase subunit SecD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 633; Mature: 633

Protein sequence:

>633_residues
MELKETFLARQKKSAASAWERWPKRAIALFVLIVVGVYALVLLTGDRSATPKLGIDLQGGTRVTLVPQGQDPTQDQLNQA
RTILENRVNGMGVSGASVVADGNTLVITVPGEDTAQAQSLGQTSQLLFRPVGQAGMPDMTTLMPELEEMANRWVEYGVIT
EEQANASLEEMNTAVASTTAVEGEEATEPEPVTVSATPMDEPANSIEATQRRQEITDMLRTDRQSTDPTVQIAASSLMQC
TTDEMDPLAGTDDPRLPLVACDPAVGGVYVLDPAPLLNGETDEENGARLTGNEIDTNRPITGGFNAQSGQMEISFAFKSG
DGEEGSATWSSLTSQYLQQQIAITLDSQVISAPVIQSATPVGSATSITGDFTQTEAQDLANNLRYGALPLSFAGENGERG
GTTTTVPPSLGAASLKAGLIAGIVGIALVAIFVFAYYRVFGFVSLFTLFAAGVLVYGLLVLLGRWIGYSLDLAGIAGLII
GIGTTADSFVVFYERIKDEIREGRSFRSAAPRAWESAKRTIVTGNMVTLLGAIVIYLLAVGEVKGFAFTLGLTTVFDLVV
TFLITAPLVILASRNPSFAKPSVNGMGRVMKLVEERRANGELDEPEYLKKIHAKNATAEKPAPGTDTNQEEEK

Sequences:

>Translated_633_residues
MELKETFLARQKKSAASAWERWPKRAIALFVLIVVGVYALVLLTGDRSATPKLGIDLQGGTRVTLVPQGQDPTQDQLNQA
RTILENRVNGMGVSGASVVADGNTLVITVPGEDTAQAQSLGQTSQLLFRPVGQAGMPDMTTLMPELEEMANRWVEYGVIT
EEQANASLEEMNTAVASTTAVEGEEATEPEPVTVSATPMDEPANSIEATQRRQEITDMLRTDRQSTDPTVQIAASSLMQC
TTDEMDPLAGTDDPRLPLVACDPAVGGVYVLDPAPLLNGETDEENGARLTGNEIDTNRPITGGFNAQSGQMEISFAFKSG
DGEEGSATWSSLTSQYLQQQIAITLDSQVISAPVIQSATPVGSATSITGDFTQTEAQDLANNLRYGALPLSFAGENGERG
GTTTTVPPSLGAASLKAGLIAGIVGIALVAIFVFAYYRVFGFVSLFTLFAAGVLVYGLLVLLGRWIGYSLDLAGIAGLII
GIGTTADSFVVFYERIKDEIREGRSFRSAAPRAWESAKRTIVTGNMVTLLGAIVIYLLAVGEVKGFAFTLGLTTVFDLVV
TFLITAPLVILASRNPSFAKPSVNGMGRVMKLVEERRANGELDEPEYLKKIHAKNATAEKPAPGTDTNQEEEK
>Mature_633_residues
MELKETFLARQKKSAASAWERWPKRAIALFVLIVVGVYALVLLTGDRSATPKLGIDLQGGTRVTLVPQGQDPTQDQLNQA
RTILENRVNGMGVSGASVVADGNTLVITVPGEDTAQAQSLGQTSQLLFRPVGQAGMPDMTTLMPELEEMANRWVEYGVIT
EEQANASLEEMNTAVASTTAVEGEEATEPEPVTVSATPMDEPANSIEATQRRQEITDMLRTDRQSTDPTVQIAASSLMQC
TTDEMDPLAGTDDPRLPLVACDPAVGGVYVLDPAPLLNGETDEENGARLTGNEIDTNRPITGGFNAQSGQMEISFAFKSG
DGEEGSATWSSLTSQYLQQQIAITLDSQVISAPVIQSATPVGSATSITGDFTQTEAQDLANNLRYGALPLSFAGENGERG
GTTTTVPPSLGAASLKAGLIAGIVGIALVAIFVFAYYRVFGFVSLFTLFAAGVLVYGLLVLLGRWIGYSLDLAGIAGLII
GIGTTADSFVVFYERIKDEIREGRSFRSAAPRAWESAKRTIVTGNMVTLLGAIVIYLLAVGEVKGFAFTLGLTTVFDLVV
TFLITAPLVILASRNPSFAKPSVNGMGRVMKLVEERRANGELDEPEYLKKIHAKNATAEKPAPGTDTNQEEEK

Specific function: Involved in protein export [H]

COG id: COG0342

COG function: function code U; Preprotein translocase subunit SecD

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secD/secF family. SecD subfamily [H]

Homologues:

Organism=Escherichia coli, GI1786609, Length=218, Percent_Identity=32.1100917431193, Blast_Score=106, Evalue=4e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005791
- InterPro:   IPR022813
- InterPro:   IPR022646
- InterPro:   IPR022645 [H]

Pfam domain/function: PF07549 Sec_GG; PF02355 SecD_SecF [H]

EC number: NA

Molecular weight: Translated: 67424; Mature: 67424

Theoretical pI: Translated: 4.28; Mature: 4.28

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MELKETFLARQKKSAASAWERWPKRAIALFVLIVVGVYALVLLTGDRSATPKLGIDLQGG
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEECCC
TRVTLVPQGQDPTQDQLNQARTILENRVNGMGVSGASVVADGNTLVITVPGEDTAQAQSL
CEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEECCCEEEEEECCCCHHHHHHC
GQTSQLLFRPVGQAGMPDMTTLMPELEEMANRWVEYGVITEEQANASLEEMNTAVASTTA
CHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHCCHHHHHHHHHHHHHC
VEGEEATEPEPVTVSATPMDEPANSIEATQRRQEITDMLRTDRQSTDPTVQIAASSLMQC
CCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHH
TTDEMDPLAGTDDPRLPLVACDPAVGGVYVLDPAPLLNGETDEENGARLTGNEIDTNRPI
HCCCCCCCCCCCCCCCCEEEECCCCCCEEEECCCCCCCCCCCCCCCCEEECCCCCCCCCC
TGGFNAQSGQMEISFAFKSGDGEEGSATWSSLTSQYLQQQIAITLDSQVISAPVIQSATP
CCCCCCCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHEECCHHHHHHHHHCCCC
VGSATSITGDFTQTEAQDLANNLRYGALPLSFAGENGERGGTTTTVPPSLGAASLKAGLI
CCCCCCCCCCCHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHH
AGIVGIALVAIFVFAYYRVFGFVSLFTLFAAGVLVYGLLVLLGRWIGYSLDLAGIAGLII
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
GIGTTADSFVVFYERIKDEIREGRSFRSAAPRAWESAKRTIVTGNMVTLLGAIVIYLLAV
CCCCCHHHHHHHHHHHHHHHHCCCHHHHCCCHHHHHCCCEEEECHHHHHHHHHHHHHHHH
GEVKGFAFTLGLTTVFDLVVTFLITAPLVILASRNPSFAKPSVNGMGRVMKLVEERRANG
HHHCCCEEHHHHHHHHHHHHHHHHHHHHEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCC
ELDEPEYLKKIHAKNATAEKPAPGTDTNQEEEK
CCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MELKETFLARQKKSAASAWERWPKRAIALFVLIVVGVYALVLLTGDRSATPKLGIDLQGG
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEECCC
TRVTLVPQGQDPTQDQLNQARTILENRVNGMGVSGASVVADGNTLVITVPGEDTAQAQSL
CEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEECCCEEEEEECCCCHHHHHHC
GQTSQLLFRPVGQAGMPDMTTLMPELEEMANRWVEYGVITEEQANASLEEMNTAVASTTA
CHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHCCHHHHHHHHHHHHHC
VEGEEATEPEPVTVSATPMDEPANSIEATQRRQEITDMLRTDRQSTDPTVQIAASSLMQC
CCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHH
TTDEMDPLAGTDDPRLPLVACDPAVGGVYVLDPAPLLNGETDEENGARLTGNEIDTNRPI
HCCCCCCCCCCCCCCCCEEEECCCCCCEEEECCCCCCCCCCCCCCCCEEECCCCCCCCCC
TGGFNAQSGQMEISFAFKSGDGEEGSATWSSLTSQYLQQQIAITLDSQVISAPVIQSATP
CCCCCCCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHEECCHHHHHHHHHCCCC
VGSATSITGDFTQTEAQDLANNLRYGALPLSFAGENGERGGTTTTVPPSLGAASLKAGLI
CCCCCCCCCCCHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHH
AGIVGIALVAIFVFAYYRVFGFVSLFTLFAAGVLVYGLLVLLGRWIGYSLDLAGIAGLII
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
GIGTTADSFVVFYERIKDEIREGRSFRSAAPRAWESAKRTIVTGNMVTLLGAIVIYLLAV
CCCCCHHHHHHHHHHHHHHHHCCCHHHHCCCHHHHHCCCEEEECHHHHHHHHHHHHHHHH
GEVKGFAFTLGLTTVFDLVVTFLITAPLVILASRNPSFAKPSVNGMGRVMKLVEERRANG
HHHCCCEEHHHHHHHHHHHHHHHHHHHHEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCC
ELDEPEYLKKIHAKNATAEKPAPGTDTNQEEEK
CCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]