Click here to switch to the map view.

The map label for this gene is secF [H]

Identifier: 145295777

GI number: 145295777

Start: 1896026

End: 1897237

Strand: Reverse

Name: secF [H]

Synonym: cgR_1702

Alternate gene names: 145295777

Gene position: 1897237-1896026 (Counterclockwise)

Preceding gene: 145295778

Following gene: 145295776

Centisome position: 57.25

GC content: 55.36

Gene sequence:

>1212_bases
ATGACTGATTCCCAGACTGAATCACTGTCAACTCAGAGCGTAAAACCAGCCAAAAAACGCAGTTGGTTTAACAGCCTCTA
CACCGGTGACGGCGGCATTGACTTCATCGCCAAAACCAAACTGTGGTACTGGATCACCGGCATTTTGCTGGTTATCTCGA
TCCTGTTCATCGCCATCCGTGGCTTCTCCCTGAGCATCGATTTCCAGGGCGGTACCAAGATGAGCATGCCAGCATCGGAT
TACTCCACCGAACAGGTGGAGGAAACCTTTACTGAAGCCACCGGCATTACTCCGGAAATCGTGCAGATCGTCGGTTCCGG
CGACGCCCGAACCCTAGAGATCCACTCTGAGCGCCTCAGCGATGAGGATGTAGAAAAAGCCCGCCTGGCGATCTACGAGG
AATACCAACCCCTCAACTCTGAAGGTCAGCCAAGCCCAGATGCGATCGGTAATTCCACCGTGTCGGAATCATGGGGCTCC
ACCATCACCAAACGCATGGTGTTGGCTTTGATTGCCTTCCTGGTTATCGCAGCGATCTACATTGCCTTCCGCCTCGAGCG
TGAAATGGCCATCGCCGCCATGGCAGCACTTGTTGTTGACGGCATCGTCATCGCCGGCATCTACGCCGTCATCGGTTTCG
AAGTATCCCCAGCAACCGTCATCGGCCTGCTCACCGTGCTGACCTTCTCCATCTACGATACCGTCGTGGTCTTTGACAAG
GTCAGAGAAAACACCGAAGGCTTCGAAGGCAGCCGCCGACGAACGTATGCCGAACAAGCCAACCTGGCGGTCAACCAGAC
TTTCATGCGTTCGATCTCCACCACAATCATCTCTGCACTTCCGATCATCGCTTTGATGGTTGTCGCCGTCTGGATGATGG
GTGTTGGCACCCTCAAAGACCTCGCACTGATCCAGCTGATCGGCGTCATCGAAGGCACCTTCTCCTCCGTCTTCCTAGCA
ACCCCACTGCTGGTCAGCCTGAAAAACCGCCTCAGCAAAACCAAAGCGCACACCGCTTCCGTTATGAAGTTGCGCGACGG
ACAAAGCACGCTTATCGACGCCACCCCACAGCCCAACGCCGACGCCTCCGCGCACGGCACCGAAAGCGACACTGACGGTG
TGACTCCTGAAGCACCTGCAAAACGTACAGTAAGCAAACCCATTGTGGATGATCACCGATCAAGCGGAACCTGGCGACCA
GGCAGAAGCTAA

Upstream 100 bases:

>100_bases
TGGATGAGCCTGAGTACCTGAAAAAGATCCATGCCAAGAATGCGACAGCGGAAAAGCCTGCACCTGGCACCGATACGAAC
CAAGAGGAGGAGAAGTAGCC

Downstream 100 bases:

>100_bases
ACCAATTGGAGAACTAAGAAAAATCCCGCAGACTCGCGTTCTGCGGGATTTTTTGTGCGTCTATGACTCACGATGTTCCC
AAACGACGACTTCACGTGGT

Product: preprotein translocase subunit SecF

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 403; Mature: 402

Protein sequence:

>403_residues
MTDSQTESLSTQSVKPAKKRSWFNSLYTGDGGIDFIAKTKLWYWITGILLVISILFIAIRGFSLSIDFQGGTKMSMPASD
YSTEQVEETFTEATGITPEIVQIVGSGDARTLEIHSERLSDEDVEKARLAIYEEYQPLNSEGQPSPDAIGNSTVSESWGS
TITKRMVLALIAFLVIAAIYIAFRLEREMAIAAMAALVVDGIVIAGIYAVIGFEVSPATVIGLLTVLTFSIYDTVVVFDK
VRENTEGFEGSRRRTYAEQANLAVNQTFMRSISTTIISALPIIALMVVAVWMMGVGTLKDLALIQLIGVIEGTFSSVFLA
TPLLVSLKNRLSKTKAHTASVMKLRDGQSTLIDATPQPNADASAHGTESDTDGVTPEAPAKRTVSKPIVDDHRSSGTWRP
GRS

Sequences:

>Translated_403_residues
MTDSQTESLSTQSVKPAKKRSWFNSLYTGDGGIDFIAKTKLWYWITGILLVISILFIAIRGFSLSIDFQGGTKMSMPASD
YSTEQVEETFTEATGITPEIVQIVGSGDARTLEIHSERLSDEDVEKARLAIYEEYQPLNSEGQPSPDAIGNSTVSESWGS
TITKRMVLALIAFLVIAAIYIAFRLEREMAIAAMAALVVDGIVIAGIYAVIGFEVSPATVIGLLTVLTFSIYDTVVVFDK
VRENTEGFEGSRRRTYAEQANLAVNQTFMRSISTTIISALPIIALMVVAVWMMGVGTLKDLALIQLIGVIEGTFSSVFLA
TPLLVSLKNRLSKTKAHTASVMKLRDGQSTLIDATPQPNADASAHGTESDTDGVTPEAPAKRTVSKPIVDDHRSSGTWRP
GRS
>Mature_402_residues
TDSQTESLSTQSVKPAKKRSWFNSLYTGDGGIDFIAKTKLWYWITGILLVISILFIAIRGFSLSIDFQGGTKMSMPASDY
STEQVEETFTEATGITPEIVQIVGSGDARTLEIHSERLSDEDVEKARLAIYEEYQPLNSEGQPSPDAIGNSTVSESWGST
ITKRMVLALIAFLVIAAIYIAFRLEREMAIAAMAALVVDGIVIAGIYAVIGFEVSPATVIGLLTVLTFSIYDTVVVFDKV
RENTEGFEGSRRRTYAEQANLAVNQTFMRSISTTIISALPIIALMVVAVWMMGVGTLKDLALIQLIGVIEGTFSSVFLAT
PLLVSLKNRLSKTKAHTASVMKLRDGQSTLIDATPQPNADASAHGTESDTDGVTPEAPAKRTVSKPIVDDHRSSGTWRPG
RS

Specific function: Involved in protein export [H]

COG id: COG0341

COG function: function code U; Preprotein translocase subunit SecF

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secD/secF family. SecF subfamily [H]

Homologues:

Organism=Escherichia coli, GI1786610, Length=289, Percent_Identity=27.681660899654, Blast_Score=99, Evalue=4e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022813
- InterPro:   IPR022646
- InterPro:   IPR022645
- InterPro:   IPR005665 [H]

Pfam domain/function: PF07549 Sec_GG; PF02355 SecD_SecF [H]

EC number: NA

Molecular weight: Translated: 43658; Mature: 43527

Theoretical pI: Translated: 4.90; Mature: 4.90

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTDSQTESLSTQSVKPAKKRSWFNSLYTGDGGIDFIAKTKLWYWITGILLVISILFIAIR
CCCCCCHHCCHHCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHC
GFSLSIDFQGGTKMSMPASDYSTEQVEETFTEATGITPEIVQIVGSGDARTLEIHSERLS
CCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHCCCCCEEEEEHHHHCC
DEDVEKARLAIYEEYQPLNSEGQPSPDAIGNSTVSESWGSTITKRMVLALIAFLVIAAIY
HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IAFRLEREMAIAAMAALVVDGIVIAGIYAVIGFEVSPATVIGLLTVLTFSIYDTVVVFDK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
VRENTEGFEGSRRRTYAEQANLAVNQTFMRSISTTIISALPIIALMVVAVWMMGVGTLKD
HHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
LALIQLIGVIEGTFSSVFLATPLLVSLKNRLSKTKAHTASVMKLRDGQSTLIDATPQPNA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCC
DASAHGTESDTDGVTPEAPAKRTVSKPIVDDHRSSGTWRPGRS
CCCCCCCCCCCCCCCCCCCCHHHHCCCCHHCCCCCCCCCCCCC
>Mature Secondary Structure 
TDSQTESLSTQSVKPAKKRSWFNSLYTGDGGIDFIAKTKLWYWITGILLVISILFIAIR
CCCCCHHCCHHCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHC
GFSLSIDFQGGTKMSMPASDYSTEQVEETFTEATGITPEIVQIVGSGDARTLEIHSERLS
CCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHCCCCCEEEEEHHHHCC
DEDVEKARLAIYEEYQPLNSEGQPSPDAIGNSTVSESWGSTITKRMVLALIAFLVIAAIY
HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IAFRLEREMAIAAMAALVVDGIVIAGIYAVIGFEVSPATVIGLLTVLTFSIYDTVVVFDK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
VRENTEGFEGSRRRTYAEQANLAVNQTFMRSISTTIISALPIIALMVVAVWMMGVGTLKD
HHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
LALIQLIGVIEGTFSSVFLATPLLVSLKNRLSKTKAHTASVMKLRDGQSTLIDATPQPNA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCC
DASAHGTESDTDGVTPEAPAKRTVSKPIVDDHRSSGTWRPGRS
CCCCCCCCCCCCCCCCCCCCHHHHCCCCHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]