Click here to switch to the map view.

The map label for this gene is scpB [H]

Identifier: 145295559

GI number: 145295559

Start: 1646981

End: 1647559

Strand: Direct

Name: scpB [H]

Synonym: cgR_1486

Alternate gene names: 145295559

Gene position: 1646981-1647559 (Clockwise)

Preceding gene: 145295558

Following gene: 145295560

Centisome position: 49.69

GC content: 53.02

Gene sequence:

>579_bases
ATGAATGATTTCGATCCAGCACTGATTTCCGCGATGAGCCTTATCCCTCAGACGAGGTCTCGGATGGAATCAATCTTGTT
GGTGGTCGATACCCCAGTTTCAGCACGCACGCTGGCTGGGGTGTTGGGCATTGACGTGCCTGCAACAGAGGCAATTTTGA
AGGAAATGGCCTTTGAGCTTTCTGAACGGGGCAGCGGCATTGAACTGCGGGAAACGGCAGAAGGATGGCGCTATTACACC
CGCCCGGAAAATGCGGACATCGTCGAGCAATTCCTCCTCGATGGAAACCAAACCAGACTGTCCCGTGCAGCATTGGAAAC
ACTCGCGGTGGTGGCATATCGGCAGCCGGTCACACGCTCCCAGATTTCAGCAGTGCGCGGAGTAAATGTCGACGGCGTCA
TGAGAACCTTGCAGCTTCGAGGCCTAGTCAAAGAAGTCGATGTGGACGAATCAACGGGCGCGCACCGCTATGGCACAACG
GAATTGCTGCTTGAGCTGTTGGGTATTGATTCTTTGGATAAATTACCGGATCTAGCACCGCTTTTGCCGGATGTTGACTC
CATTGATGAAGACTTCTAA

Upstream 100 bases:

>100_bases
AGGTTATGACGACGTTGTAGTGTATGAGGGCTCCTGGGCGGAATGGGGCAACCCGGCAAACCAAAAGCCAATTGCTTAAC
GCCAGCTATGATAACCACTC

Downstream 100 bases:

>100_bases
AGCATCAGTTAAAGCCCCGACTATTAAAATCTCCTAAAATAGGCTAGAATTCACGGGATTCAATTTCATACGTTTTCTCT
CAAGATTAAGGACACTTACG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 192; Mature: 192

Protein sequence:

>192_residues
MNDFDPALISAMSLIPQTRSRMESILLVVDTPVSARTLAGVLGIDVPATEAILKEMAFELSERGSGIELRETAEGWRYYT
RPENADIVEQFLLDGNQTRLSRAALETLAVVAYRQPVTRSQISAVRGVNVDGVMRTLQLRGLVKEVDVDESTGAHRYGTT
ELLLELLGIDSLDKLPDLAPLLPDVDSIDEDF

Sequences:

>Translated_192_residues
MNDFDPALISAMSLIPQTRSRMESILLVVDTPVSARTLAGVLGIDVPATEAILKEMAFELSERGSGIELRETAEGWRYYT
RPENADIVEQFLLDGNQTRLSRAALETLAVVAYRQPVTRSQISAVRGVNVDGVMRTLQLRGLVKEVDVDESTGAHRYGTT
ELLLELLGIDSLDKLPDLAPLLPDVDSIDEDF
>Mature_192_residues
MNDFDPALISAMSLIPQTRSRMESILLVVDTPVSARTLAGVLGIDVPATEAILKEMAFELSERGSGIELRETAEGWRYYT
RPENADIVEQFLLDGNQTRLSRAALETLAVVAYRQPVTRSQISAVRGVNVDGVMRTLQLRGLVKEVDVDESTGAHRYGTT
ELLLELLGIDSLDKLPDLAPLLPDVDSIDEDF

Specific function: Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing smc and scpA that pull DNA away from mid-cell into both cell halves [H]

COG id: COG1386

COG function: function code K; Predicted transcriptional regulator containing the HTH domain

Gene ontology:

Cell location: Cytoplasm. Note=Associated with two foci at the outer edges of the nucleoid region in young cells, and at four foci within both cell halves in older cells (By similarity) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the scpB family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005234
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04079 DUF387 [H]

EC number: NA

Molecular weight: Translated: 21113; Mature: 21113

Theoretical pI: Translated: 4.18; Mature: 4.18

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNDFDPALISAMSLIPQTRSRMESILLVVDTPVSARTLAGVLGIDVPATEAILKEMAFEL
CCCCCHHHHHHHHHHHHHHHHHHHEEEEECCCCHHHHHHHHHHCCCCHHHHHHHHHHHHH
SERGSGIELRETAEGWRYYTRPENADIVEQFLLDGNQTRLSRAALETLAVVAYRQPVTRS
HHCCCCCCHHHHHCCCEEECCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCHHH
QISAVRGVNVDGVMRTLQLRGLVKEVDVDESTGAHRYGTTELLLELLGIDSLDKLPDLAP
HHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCHHHCCCHHH
LLPDVDSIDEDF
HCCCCCCCCCCC
>Mature Secondary Structure
MNDFDPALISAMSLIPQTRSRMESILLVVDTPVSARTLAGVLGIDVPATEAILKEMAFEL
CCCCCHHHHHHHHHHHHHHHHHHHEEEEECCCCHHHHHHHHHHCCCCHHHHHHHHHHHHH
SERGSGIELRETAEGWRYYTRPENADIVEQFLLDGNQTRLSRAALETLAVVAYRQPVTRS
HHCCCCCCHHHHHCCCEEECCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCHHH
QISAVRGVNVDGVMRTLQLRGLVKEVDVDESTGAHRYGTTELLLELLGIDSLDKLPDLAP
HHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCHHHCCCHHH
LLPDVDSIDEDF
HCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA