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The map label for this gene is yesS [H]

Identifier: 138896764

GI number: 138896764

Start: 3226800

End: 3228341

Strand: Reverse

Name: yesS [H]

Synonym: GTNG_3127

Alternate gene names: 138896764

Gene position: 3228341-3226800 (Counterclockwise)

Preceding gene: 138896765

Following gene: 138896763

Centisome position: 90.93

GC content: 52.72

Gene sequence:

>1542_bases
ATGAATGTGGTGATCGTCGATGATGAAGCATTGGAGCGCAAGGCGCTTTGCAAAATGATTCGCGACCATCTACCCGAGAT
GGAAGTGGTGGCGGAGGGTGCCAACGGGCGCGAGGCGGTCGAGATCGCCAAGCGTTATCGTCCAGATATCATGCTGATTG
ACATCAAAATGCCCGCTCTTGACGGACTGCAAGCGATTGAAGCCATTCGCCGCGACGGCCTCGATATCGAGTTCATTATT
GTGTCGGCGTTTGATTTGTTCGACTATGCAAAACAAGCGATGCGCTTTGGGGTCAAAGAGTATTTATTGAAACCGAGCCG
GAAGGAGGAGGTGATTTCAGCTTTAGAACGGGTCAGTCAAGCCGTAGCGGCGAAACGGCGACATGAAGAGAGCAACCGCC
AGCTGCAGGAGCAGCTTCGCCGGTTGCAGACACTGGTGGAAAGCGAATGGCTGTCCGTCCTGATGACGGAAGACGTATCG
GCTGATGAGTGGGAACGGTGGAAGGAGCTGCTGCCGTTTTCGCTAGCGACAGGAATGTTTATTGTCCTTCAGTTTCCTGA
TAAGGGGAAGGTCGATGAATGGAAATCATGGCTCGACAAACAGCTGGATGAGCGTGCGCCAGTGCGCTATATAATGGGAC
GGATGGGGAATGGGCGCCTGCCGATTTTGTTTTTCCAAAGCCCCGATGATGGTGAGTTGGCTTGGAAGCCCACTATTCAA
ACATTGGCATTCGATTTGACGCGGCAGTTTTCCGCTCGGTACGGTGCCGCGCTGTATATCGGACTTGGCTCCCCTGTTTC
GCGCTTGGATCAGCTTCGTTCTTCATACTATGAGGCGTTGTCGGCTGTGCGCTATTATGCAGAACGGCAAAAAGCGCAAG
TTGGATTTCCGCCCGCAGAGGCGATGTACGCTAGTAGGGCGGCGGAACGGGATCAACAGCTGTTTGAGTCATTGCGCCTT
GGTGATATCGAGCAAGCGCGGTTGGTGTGTCGAACGTATATCAAGGAACTGACCTCATCCTACTCACTGCCGTCTGCTGT
TCGCAAGGCGGAAGAGGCATTGATATGGATTGGGCGCCGTTTATCTGAACTTGGGATTCGCTACGAGCGGATCGCTTCGT
TTACTTCTTGTCGGTCGGCGGCTGAGTTGCAGCAGGCCGTGTTGGATGAATTGGACCGCATTGCTACGGATCTTGAGGTT
TGGCGCCACCAGCATGCCCACGGCAAACTCGGCAAGGCGAAAGAGTACATTGACCGTCATTATGCCGAGCCTCTGACGCT
TGAAGAAGTGGCCGAACATGCTGGGATGAGCCCGTACTACTTCAGTAAACTGTTCAAAGAACAGTTTGGCGTCACGTTTA
TTGACTATGTGACGAACGTGCGCATCGAGCGGGCAAAAGAAGCGCTCGTTCGCACCGATTTTAGTTTAAAAGAAATATGC
TTTTCCGTTGGCTACAACGATCCGAACTATTTCAGCCGCGTGTTTAAAAAACAAACGGGCTGGTCGCCGAGCGAATACCG
AAAAAAACTGCAGAGGCGGTAG

Upstream 100 bases:

>100_bases
GTTTTATGGCGTCACCGATGTGGTAGATATCGAGTCGGCGCCGGGGAGAGGAACGACTATCCGGCTGCGGTTGCCCAAAT
GGACGAAGGAGGGATGAGCG

Downstream 100 bases:

>100_bases
CCGATGCAGCCTCACCCATCTCCAACAAAACATTGGCTCGCCTCCCGACTGGGCGGGCTTTTTTGATGTTGTGCGACCGG
TGATTCCCCTGCTAAGCTAC

Product: two-component response regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 513; Mature: 513

Protein sequence:

>513_residues
MNVVIVDDEALERKALCKMIRDHLPEMEVVAEGANGREAVEIAKRYRPDIMLIDIKMPALDGLQAIEAIRRDGLDIEFII
VSAFDLFDYAKQAMRFGVKEYLLKPSRKEEVISALERVSQAVAAKRRHEESNRQLQEQLRRLQTLVESEWLSVLMTEDVS
ADEWERWKELLPFSLATGMFIVLQFPDKGKVDEWKSWLDKQLDERAPVRYIMGRMGNGRLPILFFQSPDDGELAWKPTIQ
TLAFDLTRQFSARYGAALYIGLGSPVSRLDQLRSSYYEALSAVRYYAERQKAQVGFPPAEAMYASRAAERDQQLFESLRL
GDIEQARLVCRTYIKELTSSYSLPSAVRKAEEALIWIGRRLSELGIRYERIASFTSCRSAAELQQAVLDELDRIATDLEV
WRHQHAHGKLGKAKEYIDRHYAEPLTLEEVAEHAGMSPYYFSKLFKEQFGVTFIDYVTNVRIERAKEALVRTDFSLKEIC
FSVGYNDPNYFSRVFKKQTGWSPSEYRKKLQRR

Sequences:

>Translated_513_residues
MNVVIVDDEALERKALCKMIRDHLPEMEVVAEGANGREAVEIAKRYRPDIMLIDIKMPALDGLQAIEAIRRDGLDIEFII
VSAFDLFDYAKQAMRFGVKEYLLKPSRKEEVISALERVSQAVAAKRRHEESNRQLQEQLRRLQTLVESEWLSVLMTEDVS
ADEWERWKELLPFSLATGMFIVLQFPDKGKVDEWKSWLDKQLDERAPVRYIMGRMGNGRLPILFFQSPDDGELAWKPTIQ
TLAFDLTRQFSARYGAALYIGLGSPVSRLDQLRSSYYEALSAVRYYAERQKAQVGFPPAEAMYASRAAERDQQLFESLRL
GDIEQARLVCRTYIKELTSSYSLPSAVRKAEEALIWIGRRLSELGIRYERIASFTSCRSAAELQQAVLDELDRIATDLEV
WRHQHAHGKLGKAKEYIDRHYAEPLTLEEVAEHAGMSPYYFSKLFKEQFGVTFIDYVTNVRIERAKEALVRTDFSLKEIC
FSVGYNDPNYFSRVFKKQTGWSPSEYRKKLQRR
>Mature_513_residues
MNVVIVDDEALERKALCKMIRDHLPEMEVVAEGANGREAVEIAKRYRPDIMLIDIKMPALDGLQAIEAIRRDGLDIEFII
VSAFDLFDYAKQAMRFGVKEYLLKPSRKEEVISALERVSQAVAAKRRHEESNRQLQEQLRRLQTLVESEWLSVLMTEDVS
ADEWERWKELLPFSLATGMFIVLQFPDKGKVDEWKSWLDKQLDERAPVRYIMGRMGNGRLPILFFQSPDDGELAWKPTIQ
TLAFDLTRQFSARYGAALYIGLGSPVSRLDQLRSSYYEALSAVRYYAERQKAQVGFPPAEAMYASRAAERDQQLFESLRL
GDIEQARLVCRTYIKELTSSYSLPSAVRKAEEALIWIGRRLSELGIRYERIASFTSCRSAAELQQAVLDELDRIATDLEV
WRHQHAHGKLGKAKEYIDRHYAEPLTLEEVAEHAGMSPYYFSKLFKEQFGVTFIDYVTNVRIERAKEALVRTDFSLKEIC
FSVGYNDPNYFSRVFKKQTGWSPSEYRKKLQRR

Specific function: Probable transcription factor regulating the pathway responsible for rhamnogalacturonan depolymerization [H]

COG id: COG4753

COG function: function code T; Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790391, Length=96, Percent_Identity=42.7083333333333, Blast_Score=85, Evalue=9e-18,
Organism=Escherichia coli, GI1788725, Length=97, Percent_Identity=37.1134020618557, Blast_Score=79, Evalue=8e-16,
Organism=Escherichia coli, GI1786251, Length=132, Percent_Identity=34.0909090909091, Blast_Score=76, Evalue=4e-15,
Organism=Escherichia coli, GI1788521, Length=136, Percent_Identity=33.0882352941176, Blast_Score=71, Evalue=2e-13,
Organism=Escherichia coli, GI1788222, Length=118, Percent_Identity=30.5084745762712, Blast_Score=66, Evalue=4e-12,
Organism=Escherichia coli, GI1787987, Length=97, Percent_Identity=31.9587628865979, Blast_Score=66, Evalue=5e-12,
Organism=Escherichia coli, GI1790559, Length=109, Percent_Identity=31.1926605504587, Blast_Score=65, Evalue=1e-11,
Organism=Escherichia coli, GI1788712, Length=116, Percent_Identity=30.1724137931034, Blast_Score=64, Evalue=3e-11,
Organism=Escherichia coli, GI1790497, Length=95, Percent_Identity=33.6842105263158, Blast_Score=64, Evalue=3e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018062
- InterPro:   IPR018060 [H]

Pfam domain/function: PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 59382; Mature: 59382

Theoretical pI: Translated: 6.89; Mature: 6.89

Prosite motif: PS50110 RESPONSE_REGULATORY ; PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNVVIVDDEALERKALCKMIRDHLPEMEVVAEGANGREAVEIAKRYRPDIMLIDIKMPAL
CEEEEECCHHHHHHHHHHHHHHHCCCHHHHHCCCCCHHHHHHHHHCCCCEEEEEEECCCH
DGLQAIEAIRRDGLDIEFIIVSAFDLFDYAKQAMRFGVKEYLLKPSRKEEVISALERVSQ
HHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
AVAAKRRHEESNRQLQEQLRRLQTLVESEWLSVLMTEDVSADEWERWKELLPFSLATGMF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCHHHHCCEE
IVLQFPDKGKVDEWKSWLDKQLDERAPVRYIMGRMGNGRLPILFFQSPDDGELAWKPTIQ
EEEECCCCCCHHHHHHHHHHHHHCCCCHHHHHHCCCCCCEEEEEEECCCCCCEEECHHHH
TLAFDLTRQFSARYGAALYIGLGSPVSRLDQLRSSYYEALSAVRYYAERQKAQVGFPPAE
HHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHH
AMYASRAAERDQQLFESLRLGDIEQARLVCRTYIKELTSSYSLPSAVRKAEEALIWIGRR
HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
LSELGIRYERIASFTSCRSAAELQQAVLDELDRIATDLEVWRHQHAHGKLGKAKEYIDRH
HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
YAEPLTLEEVAEHAGMSPYYFSKLFKEQFGVTFIDYVTNVRIERAKEALVRTDFSLKEIC
CCCCCCHHHHHHHCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
FSVGYNDPNYFSRVFKKQTGWSPSEYRKKLQRR
HHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHCC
>Mature Secondary Structure
MNVVIVDDEALERKALCKMIRDHLPEMEVVAEGANGREAVEIAKRYRPDIMLIDIKMPAL
CEEEEECCHHHHHHHHHHHHHHHCCCHHHHHCCCCCHHHHHHHHHCCCCEEEEEEECCCH
DGLQAIEAIRRDGLDIEFIIVSAFDLFDYAKQAMRFGVKEYLLKPSRKEEVISALERVSQ
HHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
AVAAKRRHEESNRQLQEQLRRLQTLVESEWLSVLMTEDVSADEWERWKELLPFSLATGMF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCHHHHCCEE
IVLQFPDKGKVDEWKSWLDKQLDERAPVRYIMGRMGNGRLPILFFQSPDDGELAWKPTIQ
EEEECCCCCCHHHHHHHHHHHHHCCCCHHHHHHCCCCCCEEEEEEECCCCCCEEECHHHH
TLAFDLTRQFSARYGAALYIGLGSPVSRLDQLRSSYYEALSAVRYYAERQKAQVGFPPAE
HHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHH
AMYASRAAERDQQLFESLRLGDIEQARLVCRTYIKELTSSYSLPSAVRKAEEALIWIGRR
HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
LSELGIRYERIASFTSCRSAAELQQAVLDELDRIATDLEVWRHQHAHGKLGKAKEYIDRH
HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
YAEPLTLEEVAEHAGMSPYYFSKLFKEQFGVTFIDYVTNVRIERAKEALVRTDFSLKEIC
CCCCCCHHHHHHHCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
FSVGYNDPNYFSRVFKKQTGWSPSEYRKKLQRR
HHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]