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The map label for this gene is rghR [H]

Identifier: 138896497

GI number: 138896497

Start: 2963982

End: 2964452

Strand: Direct

Name: rghR [H]

Synonym: GTNG_2860

Alternate gene names: 138896497

Gene position: 2963982-2964452 (Clockwise)

Preceding gene: 138896477

Following gene: 138896498

Centisome position: 83.48

GC content: 45.44

Gene sequence:

>471_bases
ATGACGAAGGCAAAACAGTTCGGGAGTTATATTAGGCAATTGCGTGAGAAAAAGGGGTATACAGTCAACCAATTGTCTCT
GTATTCGGGGGTAAGCTCGGCTCAAATATCACGCATTGAAAATGGATTAAGAGGTGTTCCTAAACCAGAGACAATTAAAA
AATTGTCTGAAGCACTAGGCCATTCTTATGAAGACCTCATGCAAGCCGCTGGATATCTCGACGACAATGCTCAACCAAAG
CTCCCCGAACTCACGGAAAAGGACGAGCGCGATATACAGAAGGAATTAGAAAGGCTGATTAGGGGGCTCAAAACAGGAAG
CGGCTTCACAGCGTTTGGTGGAATGGACATTGACGAACTCGACGAGGAGGATCGGGAGCTGCTCATCGCGTCGCTGGAAA
ACTCGCTTCGTCTCGCCAAACGTATCGCAAAGCAAAAATTCACACCAAAAAAATATCGTAAAGAAGAATAA

Upstream 100 bases:

>100_bases
TTACCTTTTGGCAATACTTATTTCAAAAAAATCTTTATCTTCCCTTTGCCAAACGGTAATATTATTTTAGATATTACCAA
TTGGTAAGGGTGAGTGAATT

Downstream 100 bases:

>100_bases
ACATCTCAGGGGGGTTCGCTATGGCTGAGAAGATCAAACAAATCGCAGAGAACCTGATCCGAAAGCACGGCACGAACAAC
CCCTTCGAGATTGCATCACA

Product: immunity repressor protein, phage-like protein

Products: NA

Alternate protein names: RapGH repressor [H]

Number of amino acids: Translated: 156; Mature: 155

Protein sequence:

>156_residues
MTKAKQFGSYIRQLREKKGYTVNQLSLYSGVSSAQISRIENGLRGVPKPETIKKLSEALGHSYEDLMQAAGYLDDNAQPK
LPELTEKDERDIQKELERLIRGLKTGSGFTAFGGMDIDELDEEDRELLIASLENSLRLAKRIAKQKFTPKKYRKEE

Sequences:

>Translated_156_residues
MTKAKQFGSYIRQLREKKGYTVNQLSLYSGVSSAQISRIENGLRGVPKPETIKKLSEALGHSYEDLMQAAGYLDDNAQPK
LPELTEKDERDIQKELERLIRGLKTGSGFTAFGGMDIDELDEEDRELLIASLENSLRLAKRIAKQKFTPKKYRKEE
>Mature_155_residues
TKAKQFGSYIRQLREKKGYTVNQLSLYSGVSSAQISRIENGLRGVPKPETIKKLSEALGHSYEDLMQAAGYLDDNAQPKL
PELTEKDERDIQKELERLIRGLKTGSGFTAFGGMDIDELDEEDRELLIASLENSLRLAKRIAKQKFTPKKYRKEE

Specific function: Represses the expression of yvaM and both rapG and rapH. Binds directly to the promoter regions of yvaM, rapG and rapH [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH cro/C1-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001387
- InterPro:   IPR010982
- InterPro:   IPR016759 [H]

Pfam domain/function: PF01381 HTH_3 [H]

EC number: NA

Molecular weight: Translated: 17738; Mature: 17607

Theoretical pI: Translated: 9.24; Mature: 9.24

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTKAKQFGSYIRQLREKKGYTVNQLSLYSGVSSAQISRIENGLRGVPKPETIKKLSEALG
CCHHHHHHHHHHHHHHHCCCCHHHHHHHHCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHC
HSYEDLMQAAGYLDDNAQPKLPELTEKDERDIQKELERLIRGLKTGSGFTAFGGMDIDEL
CCHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHH
DEEDRELLIASLENSLRLAKRIAKQKFTPKKYRKEE
CHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCC
>Mature Secondary Structure 
TKAKQFGSYIRQLREKKGYTVNQLSLYSGVSSAQISRIENGLRGVPKPETIKKLSEALG
CHHHHHHHHHHHHHHHCCCCHHHHHHHHCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHC
HSYEDLMQAAGYLDDNAQPKLPELTEKDERDIQKELERLIRGLKTGSGFTAFGGMDIDEL
CCHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHH
DEEDRELLIASLENSLRLAKRIAKQKFTPKKYRKEE
CHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]