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The map label for this gene is ytrP [H]

Identifier: 138896340

GI number: 138896340

Start: 2812167

End: 2814002

Strand: Reverse

Name: ytrP [H]

Synonym: GTNG_2703

Alternate gene names: 138896340

Gene position: 2814002-2812167 (Counterclockwise)

Preceding gene: 138896342

Following gene: 138896337

Centisome position: 79.26

GC content: 49.46

Gene sequence:

>1836_bases
ATGAAACAGGAAGAAACGAAACGATATGAATCGTTTAAGCGGGAATTTTTCCACTGGTTTTTAGCGTTTTCGGGGGATGA
GCCGTTTTCTGTGGCGGCGGGCGAGCTGCTTATGATGTTAAAAGAAGAGTTGGCGTTGCAACAAGCCGTATTGTATTTGT
TTGACCCATCCTGTGACGCCTTTTGCCCAGAAGCAGCGGCAGGCAGGATGCCGGCGGCAGAATCGATCGTGGCAGAGGAA
AAGCAGGAGATCGTCGTGATAGATGATGGCGGGCCGTGTATAGTTGTCCGCCTCTTTTTCCTGCTTTCTGAAGAAACACG
AGCGATGCTTGAGCTTATGTATGGAAAAGAGCGCCACATCGACCGTGAATGGTTGAAAGTGCTGAGAACGGATTTGTCTT
CATTGTTCCGCAAGTTGAGTGCGCTTTCTCAACGAACGAGCGAGGAGAATCGGTATGAGCAGTTGCACCGTTTTGCAGCG
AAAATCCATTCCACCATGCAAATTGACGATGTGCTTGAAGAAATTATCTGCACGCTGCAAAATGTTTACCCAGCGTTTAC
ATACCATCTCCTCTTATCGCATGATAACCATGTGTGCGGGAATTTGCCGATTAAAACGCTTGCCTTGGATGAAAGCGAGG
GGCAACCGGCGGCACTGCGGGCGTTTTTGACCGGACAGGTGCAATGTGAGGAGACAGCCGCACCGCCGCGTTCAGTGCTA
TATGCCCCCATTAAAGGGGTGCAGGCCGTATACGGGGTGATTCAAATCATTGCTCCGTATGCCGCCCCATTTCCAAAGCG
GGAAATCAATTTTATTTCGTTGTTGGCGGGAACGGCGGGAAGGGCGTTGGAAAACGCCAAACTGTATGAGCAATCGCGCC
GGCTCGTTGCCGATTTGCAACTCATTAACGATACGATGCGTCAGCTGAATGCCCGGCCGCGGCTGTGTGAAGCGATCGAG
TATATGGTGTCGCAAATCAAAGAATCGTTTGGCGCGGACGAGGTCGGCTTTTTCTTGTTTGCTGACGGCAAACGTGAGCT
TCTTCGAGGAAGCACACCATTTTTTTATAATGACTTGTCGGCGCTGTATGTCGAATGGGTCGAAGCACGGCTTCTAAGCG
GAAATGATATTCTATTTGCCGGCGATGTACGCACGTCCGATTTCGGACCGTTTCGTTCCATTATGGCGGCGCCAATGATG
CAAAATAAAGAAATGAAAGGCGTCTGTATCGTGCTTGCCTATGAGACGTATCGATTCACCTTTGAGATGTTTAAACTGCT
GCAATCGCTCGTCCAACACTCGACACTGGCGTTTATGAATGCGATTTTGCGCGAAGAACTTGAGAAATTGGTTGTCACCG
ATTATTTGACGAAGCTGTATACGCGCCGTTATTTAGATGAGGCGATCCAAAAATCGATGGAAGAGGATGCGTTAGGGTCG
TTTCTTTTAATCGATATCGATAATTTTAAGCAGATCAACGATACTTATGGCCACCAAACCGGCGATGATGTGCTCGTTCA
AGTGGCGAAGATGATCCGCACTAACATTCGCGATGGCGATATAGCGGCGCGCTGGGGAGGAGAAGAGCTCGCCGTCTATT
TGCCAAAGGTGGCGCTTTTGGATGCGATAGCGATTGCGCGCCGCATCGTTGAAAAAGTGAGAGAGCATACGGTCCCGTCA
GTGACCGTTTCATGCGGTCTTTCATCGTGGAGACGACATGATCATGATGATGCAGAACAGCTGTTCAAACGGGCTGATGC
GGCGCTGTATATGGCAAAAGAAACAGGGAAAAACGCCATCTTCGTTCATGATGGTGACCATCTATATAGAGGGTGA

Upstream 100 bases:

>100_bases
CTTTGCTGCTTATATGATATAATAAAAGATGAAATTTTTAGAAAAAATGCTACTCATTCTTTCGCTTTAAAGTGATGATA
TCAGTTCAGGTGGAAAGACA

Downstream 100 bases:

>100_bases
AAAAGGAATCCGGACAGGCGGATTCCTTCTTCGCGCTCACCGCTATTTTCGCTTATTCTGAAACGAGCACGCTGGCGAAT
TGCTCTAAATAGCGGCGGTC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 611; Mature: 611

Protein sequence:

>611_residues
MKQEETKRYESFKREFFHWFLAFSGDEPFSVAAGELLMMLKEELALQQAVLYLFDPSCDAFCPEAAAGRMPAAESIVAEE
KQEIVVIDDGGPCIVVRLFFLLSEETRAMLELMYGKERHIDREWLKVLRTDLSSLFRKLSALSQRTSEENRYEQLHRFAA
KIHSTMQIDDVLEEIICTLQNVYPAFTYHLLLSHDNHVCGNLPIKTLALDESEGQPAALRAFLTGQVQCEETAAPPRSVL
YAPIKGVQAVYGVIQIIAPYAAPFPKREINFISLLAGTAGRALENAKLYEQSRRLVADLQLINDTMRQLNARPRLCEAIE
YMVSQIKESFGADEVGFFLFADGKRELLRGSTPFFYNDLSALYVEWVEARLLSGNDILFAGDVRTSDFGPFRSIMAAPMM
QNKEMKGVCIVLAYETYRFTFEMFKLLQSLVQHSTLAFMNAILREELEKLVVTDYLTKLYTRRYLDEAIQKSMEEDALGS
FLLIDIDNFKQINDTYGHQTGDDVLVQVAKMIRTNIRDGDIAARWGGEELAVYLPKVALLDAIAIARRIVEKVREHTVPS
VTVSCGLSSWRRHDHDDAEQLFKRADAALYMAKETGKNAIFVHDGDHLYRG

Sequences:

>Translated_611_residues
MKQEETKRYESFKREFFHWFLAFSGDEPFSVAAGELLMMLKEELALQQAVLYLFDPSCDAFCPEAAAGRMPAAESIVAEE
KQEIVVIDDGGPCIVVRLFFLLSEETRAMLELMYGKERHIDREWLKVLRTDLSSLFRKLSALSQRTSEENRYEQLHRFAA
KIHSTMQIDDVLEEIICTLQNVYPAFTYHLLLSHDNHVCGNLPIKTLALDESEGQPAALRAFLTGQVQCEETAAPPRSVL
YAPIKGVQAVYGVIQIIAPYAAPFPKREINFISLLAGTAGRALENAKLYEQSRRLVADLQLINDTMRQLNARPRLCEAIE
YMVSQIKESFGADEVGFFLFADGKRELLRGSTPFFYNDLSALYVEWVEARLLSGNDILFAGDVRTSDFGPFRSIMAAPMM
QNKEMKGVCIVLAYETYRFTFEMFKLLQSLVQHSTLAFMNAILREELEKLVVTDYLTKLYTRRYLDEAIQKSMEEDALGS
FLLIDIDNFKQINDTYGHQTGDDVLVQVAKMIRTNIRDGDIAARWGGEELAVYLPKVALLDAIAIARRIVEKVREHTVPS
VTVSCGLSSWRRHDHDDAEQLFKRADAALYMAKETGKNAIFVHDGDHLYRG
>Mature_611_residues
MKQEETKRYESFKREFFHWFLAFSGDEPFSVAAGELLMMLKEELALQQAVLYLFDPSCDAFCPEAAAGRMPAAESIVAEE
KQEIVVIDDGGPCIVVRLFFLLSEETRAMLELMYGKERHIDREWLKVLRTDLSSLFRKLSALSQRTSEENRYEQLHRFAA
KIHSTMQIDDVLEEIICTLQNVYPAFTYHLLLSHDNHVCGNLPIKTLALDESEGQPAALRAFLTGQVQCEETAAPPRSVL
YAPIKGVQAVYGVIQIIAPYAAPFPKREINFISLLAGTAGRALENAKLYEQSRRLVADLQLINDTMRQLNARPRLCEAIE
YMVSQIKESFGADEVGFFLFADGKRELLRGSTPFFYNDLSALYVEWVEARLLSGNDILFAGDVRTSDFGPFRSIMAAPMM
QNKEMKGVCIVLAYETYRFTFEMFKLLQSLVQHSTLAFMNAILREELEKLVVTDYLTKLYTRRYLDEAIQKSMEEDALGS
FLLIDIDNFKQINDTYGHQTGDDVLVQVAKMIRTNIRDGDIAARWGGEELAVYLPKVALLDAIAIARRIVEKVREHTVPS
VTVSCGLSSWRRHDHDDAEQLFKRADAALYMAKETGKNAIFVHDGDHLYRG

Specific function: Unknown

COG id: COG2199

COG function: function code T; FOG: GGDEF domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 GGDEF domain [H]

Homologues:

Organism=Escherichia coli, GI87081881, Length=169, Percent_Identity=40.2366863905325, Blast_Score=108, Evalue=1e-24,
Organism=Escherichia coli, GI87082007, Length=175, Percent_Identity=36.5714285714286, Blast_Score=101, Evalue=2e-22,
Organism=Escherichia coli, GI145693134, Length=180, Percent_Identity=32.7777777777778, Blast_Score=97, Evalue=2e-21,
Organism=Escherichia coli, GI1787262, Length=161, Percent_Identity=36.0248447204969, Blast_Score=97, Evalue=2e-21,
Organism=Escherichia coli, GI1787802, Length=155, Percent_Identity=37.4193548387097, Blast_Score=96, Evalue=5e-21,
Organism=Escherichia coli, GI1786584, Length=164, Percent_Identity=30.4878048780488, Blast_Score=87, Evalue=5e-18,
Organism=Escherichia coli, GI1788085, Length=166, Percent_Identity=32.5301204819277, Blast_Score=85, Evalue=1e-17,
Organism=Escherichia coli, GI1787816, Length=178, Percent_Identity=33.1460674157303, Blast_Score=80, Evalue=4e-16,
Organism=Escherichia coli, GI87081974, Length=193, Percent_Identity=29.0155440414508, Blast_Score=79, Evalue=6e-16,
Organism=Escherichia coli, GI1788381, Length=164, Percent_Identity=31.0975609756098, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI1787056, Length=148, Percent_Identity=34.4594594594595, Blast_Score=76, Evalue=6e-15,
Organism=Escherichia coli, GI1787541, Length=166, Percent_Identity=30.1204819277108, Blast_Score=71, Evalue=2e-13,
Organism=Escherichia coli, GI87081977, Length=174, Percent_Identity=30.4597701149425, Blast_Score=64, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR003018 [H]

Pfam domain/function: PF00990 GGDEF [H]

EC number: NA

Molecular weight: Translated: 69440; Mature: 69440

Theoretical pI: Translated: 5.12; Mature: 5.12

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKQEETKRYESFKREFFHWFLAFSGDEPFSVAAGELLMMLKEELALQQAVLYLFDPSCDA
CCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
FCPEAAAGRMPAAESIVAEEKQEIVVIDDGGPCIVVRLFFLLSEETRAMLELMYGKERHI
CCCCHHCCCCCCHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCC
DREWLKVLRTDLSSLFRKLSALSQRTSEENRYEQLHRFAAKIHSTMQIDDVLEEIICTLQ
CHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
NVYPAFTYHLLLSHDNHVCGNLPIKTLALDESEGQPAALRAFLTGQVQCEETAAPPRSVL
HHHHHHHHHHEEECCCCCCCCCCEEEEEECCCCCCHHHHHHHHHCCEEECCCCCCCHHHH
YAPIKGVQAVYGVIQIIAPYAAPFPKREINFISLLAGTAGRALENAKLYEQSRRLVADLQ
HHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
LINDTMRQLNARPRLCEAIEYMVSQIKESFGADEVGFFLFADGKRELLRGSTPFFYNDLS
HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHCCCCCCHHHHHH
ALYVEWVEARLLSGNDILFAGDVRTSDFGPFRSIMAAPMMQNKEMKGVCIVLAYETYRFT
HHHHHHHHHHHCCCCCEEEECCCCCCCCCHHHHHHHHHHHCCCCCCCEEEEEEEHHHHHH
FEMFKLLQSLVQHSTLAFMNAILREELEKLVVTDYLTKLYTRRYLDEAIQKSMEEDALGS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
FLLIDIDNFKQINDTYGHQTGDDVLVQVAKMIRTNIRDGDIAARWGGEELAVYLPKVALL
EEEEEECCCHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCEEEECCCCHHHHHHHHHHHH
DAIAIARRIVEKVREHTVPSVTVSCGLSSWRRHDHDDAEQLFKRADAALYMAKETGKNAI
HHHHHHHHHHHHHHHCCCCCEEEECCCHHHHCCCCCHHHHHHHHHHHHEEEEHHCCCCEE
FVHDGDHLYRG
EEECCCCCCCC
>Mature Secondary Structure
MKQEETKRYESFKREFFHWFLAFSGDEPFSVAAGELLMMLKEELALQQAVLYLFDPSCDA
CCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
FCPEAAAGRMPAAESIVAEEKQEIVVIDDGGPCIVVRLFFLLSEETRAMLELMYGKERHI
CCCCHHCCCCCCHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCC
DREWLKVLRTDLSSLFRKLSALSQRTSEENRYEQLHRFAAKIHSTMQIDDVLEEIICTLQ
CHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
NVYPAFTYHLLLSHDNHVCGNLPIKTLALDESEGQPAALRAFLTGQVQCEETAAPPRSVL
HHHHHHHHHHEEECCCCCCCCCCEEEEEECCCCCCHHHHHHHHHCCEEECCCCCCCHHHH
YAPIKGVQAVYGVIQIIAPYAAPFPKREINFISLLAGTAGRALENAKLYEQSRRLVADLQ
HHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
LINDTMRQLNARPRLCEAIEYMVSQIKESFGADEVGFFLFADGKRELLRGSTPFFYNDLS
HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHCCCCCCHHHHHH
ALYVEWVEARLLSGNDILFAGDVRTSDFGPFRSIMAAPMMQNKEMKGVCIVLAYETYRFT
HHHHHHHHHHHCCCCCEEEECCCCCCCCCHHHHHHHHHHHCCCCCCCEEEEEEEHHHHHH
FEMFKLLQSLVQHSTLAFMNAILREELEKLVVTDYLTKLYTRRYLDEAIQKSMEEDALGS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
FLLIDIDNFKQINDTYGHQTGDDVLVQVAKMIRTNIRDGDIAARWGGEELAVYLPKVALL
EEEEEECCCHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCEEEECCCCHHHHHHHHHHHH
DAIAIARRIVEKVREHTVPSVTVSCGLSSWRRHDHDDAEQLFKRADAALYMAKETGKNAI
HHHHHHHHHHHHHHHCCCCCEEEECCCHHHHCCCCCHHHHHHHHHHHHEEEEHHCCCCEE
FVHDGDHLYRG
EEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 1699930; 9387221; 9384377 [H]