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The map label for this gene is xseB

Identifier: 138895965

GI number: 138895965

Start: 2447881

End: 2448111

Strand: Reverse

Name: xseB

Synonym: GTNG_2324

Alternate gene names: 138895965

Gene position: 2448111-2447881 (Counterclockwise)

Preceding gene: 138895966

Following gene: 138895964

Centisome position: 68.95

GC content: 44.16

Gene sequence:

>231_bases
ATGAGCGAAGAAAAAGAAATGACGTTTGAAGAAGCAATGAAACAGCTGGAATCGATCGTTGAAAAATTGGAAGAGGGAAA
CGTGCCGCTTGAAGATGCCATTGCCTTTTTTCAAGAAGGCATGAAACTGTCGAAACTTTGCCATGATAAATTGCAGCACG
TTGAAAAACAGCTCGAGTATATGTTGCGCGAAGACGGCGAGCTCGTTCCTTTTTCGCCAGAGGAGGCATGA

Upstream 100 bases:

>100_bases
TGAAACGGATCGGTCAACTCCAGGTCGGTGAGCGCCTGTCCATCCGGGTTCAAGACGGACAAGTCGATTGCCAAGTGATG
GGAGTGGAGGAAAAAACGAC

Downstream 100 bases:

>100_bases
CAGGTGGCGTCGCTTGAGATTGAACAATTTTTAAACGAGCAAAAACAGGCTGTTGAGGCGGCATTGTCTCGCTACATTGC
TCAGCTTCATGGTCCGGAGA

Product: exodeoxyribonuclease VII small subunit

Products: NA

Alternate protein names: Exodeoxyribonuclease VII small subunit; Exonuclease VII small subunit

Number of amino acids: Translated: 76; Mature: 75

Protein sequence:

>76_residues
MSEEKEMTFEEAMKQLESIVEKLEEGNVPLEDAIAFFQEGMKLSKLCHDKLQHVEKQLEYMLREDGELVPFSPEEA

Sequences:

>Translated_76_residues
MSEEKEMTFEEAMKQLESIVEKLEEGNVPLEDAIAFFQEGMKLSKLCHDKLQHVEKQLEYMLREDGELVPFSPEEA
>Mature_75_residues
SEEKEMTFEEAMKQLESIVEKLEEGNVPLEDAIAFFQEGMKLSKLCHDKLQHVEKQLEYMLREDGELVPFSPEEA

Specific function: Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides

COG id: COG1722

COG function: function code L; Exonuclease VII small subunit

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the xseB family

Homologues:

Organism=Escherichia coli, GI1786624, Length=73, Percent_Identity=39.7260273972603, Blast_Score=61, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): EX7S_GEOTN (A4IQR9)

Other databases:

- EMBL:   CP000557
- RefSeq:   YP_001126418.1
- ProteinModelPortal:   A4IQR9
- SMR:   A4IQR9
- STRING:   A4IQR9
- GeneID:   4967251
- GenomeReviews:   CP000557_GR
- KEGG:   gtn:GTNG_2324
- NMPDR:   fig|420246.5.peg.2230
- eggNOG:   COG1722
- HOGENOM:   HBG728416
- OMA:   GMKISET
- ProtClustDB:   PRK14063
- BioCyc:   GTHE420246:GTNG_2324-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_00337
- InterPro:   IPR003761
- PIRSF:   PIRSF006488
- ProDom:   PD028235
- TIGRFAMs:   TIGR01280

Pfam domain/function: PF02609 Exonuc_VII_S

EC number: =3.1.11.6

Molecular weight: Translated: 8861; Mature: 8730

Theoretical pI: Translated: 4.09; Mature: 4.09

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
6.6 %Met     (Translated Protein)
7.9 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
5.3 %Met     (Mature Protein)
6.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSEEKEMTFEEAMKQLESIVEKLEEGNVPLEDAIAFFQEGMKLSKLCHDKLQHVEKQLEY
CCCHHHCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH
MLREDGELVPFSPEEA
HHHCCCCCCCCCCCCC
>Mature Secondary Structure 
SEEKEMTFEEAMKQLESIVEKLEEGNVPLEDAIAFFQEGMKLSKLCHDKLQHVEKQLEY
CCHHHCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH
MLREDGELVPFSPEEA
HHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA