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The map label for this gene is stc [H]

Identifier: 138895504

GI number: 138895504

Start: 1976362

End: 1978077

Strand: Reverse

Name: stc [H]

Synonym: GTNG_1852

Alternate gene names: 138895504

Gene position: 1978077-1976362 (Counterclockwise)

Preceding gene: 138895505

Following gene: 138895503

Centisome position: 55.72

GC content: 53.61

Gene sequence:

>1716_bases
ATGGCGATCAGTCATGGAACCTCGCTAGTCCTCGGCTGCCATCAAACTGTGCAAGAGGCCATCCAGCTCTTTTCAGAACA
CGGGATGGCGGCTGTTGATGTGGTTGATGAACATGGACGGAGCGTTGGACGATGTACGTGGCGGATGTTACTGCGGGCGA
TAGCGAAGGAAATGGACCGTATGGCGTTGATAGGAGATGTATTGGCCGCGTTTTCTATGGATGGTAAGACGGAGCCGAAA
GAAGACAGCATGGAAACGTCCGACGGAGAAGGTGATTCGGGTGCGGCAGCCGAGCTTGAACGGCTGCGGCGCGAGTTGGA
AGAGACGCACCGTCTAGCTGAAACGATGAAAACGGTGTTAGATGCGGCGTATGAAGGGGTCGTTGTCGTCGATGGAAACG
GTATGGTGCGGGAAATTAATAGGGCGTACTGCCAGTTTCTCGGCATTCGCCGGGAAGACGCCATTGGGAAACATGTAACG
GAAGTGATCGAAAATACTCGTTTGCACATTTGTGTACAATCCGGCATTCCGGAACGCGGATATATTCAAAAAATTTACGG
TCAACCGATGGTCGTGCACCGCATCCCGATTTGGCGTGACGGCAAAGTAATCGGGGCAGTCGGGATGTTGATTTTTCAAG
GGGTATCGGAAGTGTACGCCATTTTTCAACGTCTGCAAGAGCTGTCGCGCGAGGCAAGCAGGAAGGAGAAAAACGAGGCG
GAAGCGTCAAAACAAGAGGCGGTTGCATCTGCTGCAGTAGGAGTTGAGCGCATCATTGGCCGTCATCCGACGATCGCTGC
GGTAAAGCAGATGATTCGTCGGGCGGCGCGCGTGCCATCGACCGTATTGATTACCGGCGAAAGCGGAACGGGGAAAGAAG
TGGTCGCGCGGGCGATCCATGAGGCGGGTGCGCATGCGGACGGGCCGTTTGTCAGTGTGAATTGCGCGGCCATCCCGGAA
GCCCTTTTGGAAGCGGAGCTGTTCGGCTATGAGGACGGGGCGTTCACCGGTGCAAAAAAAGGGGGGAAGCCCGGCAAGTT
TCAGCTCGCCCACGGAGGGACGCTGTTTCTAGACGAAATCGGTGATATGCCGCTTGCTATGCAGGCGAAAATTTTACGCG
TGCTTGAGGAAAAGAAAGTGGAGAAAGTCGGCGGATTATCTGAGACAGAGGTGGATGTGCGCATCATTGCCGCAACGAAC
AAGCCGCTCGAGGAGATGGTGCGGGACGGAACGTTTCGAGAAGATTTGTTTTATCGCTTAAATATTATCCGCATCCATCT
CCCGCCGTTGCGTGAGCGGAAAACGGATATTCCGGCGCTGCTTGCTCATCACATGGAACGGCTTTGCCGGCAGTTTGGCG
TTGTATCGAAATCGTTTGCCAAAGAGGCGATGGAGGTGCTGATCAACTATTCATGGCCGGGCAACATTCGTGAGCTGGTC
AATGTCGTCGAGTGGTTGATTAGTATGGTGGAAGGGGAGAACATTGAGCGCGAACATTTGCCTGCCTATTTGTCAACTAT
TCACCCATCGGTCACACCCATGCCGGATGGCGGTGCGAATATCGCTGACCAATGGAAAGAAATAGTCTATCAATCCGAAC
GTGAACGAATCGCCGCTGCTCTTGTTGCGGCGAATGGCAATAAGGCGGAAGCGGCAAGGAGGCTTGGCATTCATCGGTCC
ACCTTATATGAGAAGCTGAAAAAATACGGGTTTTGA

Upstream 100 bases:

>100_bases
GCACCTCGCCGTCCACCACCATCCATCTTCCCAAGAAAAAAGGATTTTGGTCTCCAATGGCGAACGATATCGGAAGAGAC
AATGGTCAGGGGGGATGACG

Downstream 100 bases:

>100_bases
ACGCCCTTCACCTACACAAGCGCCTAGAAGGCGGGGAAAAATCATCATCTCCCCCTTCGCACAGCCGCCTTCAAGCATAA
CGAAGATCAAGATGGATAGG

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 571; Mature: 570

Protein sequence:

>571_residues
MAISHGTSLVLGCHQTVQEAIQLFSEHGMAAVDVVDEHGRSVGRCTWRMLLRAIAKEMDRMALIGDVLAAFSMDGKTEPK
EDSMETSDGEGDSGAAAELERLRRELEETHRLAETMKTVLDAAYEGVVVVDGNGMVREINRAYCQFLGIRREDAIGKHVT
EVIENTRLHICVQSGIPERGYIQKIYGQPMVVHRIPIWRDGKVIGAVGMLIFQGVSEVYAIFQRLQELSREASRKEKNEA
EASKQEAVASAAVGVERIIGRHPTIAAVKQMIRRAARVPSTVLITGESGTGKEVVARAIHEAGAHADGPFVSVNCAAIPE
ALLEAELFGYEDGAFTGAKKGGKPGKFQLAHGGTLFLDEIGDMPLAMQAKILRVLEEKKVEKVGGLSETEVDVRIIAATN
KPLEEMVRDGTFREDLFYRLNIIRIHLPPLRERKTDIPALLAHHMERLCRQFGVVSKSFAKEAMEVLINYSWPGNIRELV
NVVEWLISMVEGENIEREHLPAYLSTIHPSVTPMPDGGANIADQWKEIVYQSERERIAAALVAANGNKAEAARRLGIHRS
TLYEKLKKYGF

Sequences:

>Translated_571_residues
MAISHGTSLVLGCHQTVQEAIQLFSEHGMAAVDVVDEHGRSVGRCTWRMLLRAIAKEMDRMALIGDVLAAFSMDGKTEPK
EDSMETSDGEGDSGAAAELERLRRELEETHRLAETMKTVLDAAYEGVVVVDGNGMVREINRAYCQFLGIRREDAIGKHVT
EVIENTRLHICVQSGIPERGYIQKIYGQPMVVHRIPIWRDGKVIGAVGMLIFQGVSEVYAIFQRLQELSREASRKEKNEA
EASKQEAVASAAVGVERIIGRHPTIAAVKQMIRRAARVPSTVLITGESGTGKEVVARAIHEAGAHADGPFVSVNCAAIPE
ALLEAELFGYEDGAFTGAKKGGKPGKFQLAHGGTLFLDEIGDMPLAMQAKILRVLEEKKVEKVGGLSETEVDVRIIAATN
KPLEEMVRDGTFREDLFYRLNIIRIHLPPLRERKTDIPALLAHHMERLCRQFGVVSKSFAKEAMEVLINYSWPGNIRELV
NVVEWLISMVEGENIEREHLPAYLSTIHPSVTPMPDGGANIADQWKEIVYQSERERIAAALVAANGNKAEAARRLGIHRS
TLYEKLKKYGF
>Mature_570_residues
AISHGTSLVLGCHQTVQEAIQLFSEHGMAAVDVVDEHGRSVGRCTWRMLLRAIAKEMDRMALIGDVLAAFSMDGKTEPKE
DSMETSDGEGDSGAAAELERLRRELEETHRLAETMKTVLDAAYEGVVVVDGNGMVREINRAYCQFLGIRREDAIGKHVTE
VIENTRLHICVQSGIPERGYIQKIYGQPMVVHRIPIWRDGKVIGAVGMLIFQGVSEVYAIFQRLQELSREASRKEKNEAE
ASKQEAVASAAVGVERIIGRHPTIAAVKQMIRRAARVPSTVLITGESGTGKEVVARAIHEAGAHADGPFVSVNCAAIPEA
LLEAELFGYEDGAFTGAKKGGKPGKFQLAHGGTLFLDEIGDMPLAMQAKILRVLEEKKVEKVGGLSETEVDVRIIAATNK
PLEEMVRDGTFREDLFYRLNIIRIHLPPLRERKTDIPALLAHHMERLCRQFGVVSKSFAKEAMEVLINYSWPGNIRELVN
VVEWLISMVEGENIEREHLPAYLSTIHPSVTPMPDGGANIADQWKEIVYQSERERIAAALVAANGNKAEAARRLGIHRST
LYEKLKKYGF

Specific function: Unknown

COG id: COG3829

COG function: function code KT; Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 sigma-54 factor interaction domain [H]

Homologues:

Organism=Escherichia coli, GI1789233, Length=465, Percent_Identity=38.0645161290323, Blast_Score=294, Evalue=1e-80,
Organism=Escherichia coli, GI1790299, Length=330, Percent_Identity=46.969696969697, Blast_Score=285, Evalue=4e-78,
Organism=Escherichia coli, GI1790437, Length=311, Percent_Identity=46.6237942122186, Blast_Score=271, Evalue=6e-74,
Organism=Escherichia coli, GI1788550, Length=319, Percent_Identity=45.4545454545455, Blast_Score=266, Evalue=2e-72,
Organism=Escherichia coli, GI87082117, Length=327, Percent_Identity=42.8134556574924, Blast_Score=265, Evalue=8e-72,
Organism=Escherichia coli, GI1786524, Length=381, Percent_Identity=41.2073490813648, Blast_Score=257, Evalue=1e-69,
Organism=Escherichia coli, GI1789087, Length=318, Percent_Identity=44.0251572327044, Blast_Score=244, Evalue=1e-65,
Organism=Escherichia coli, GI1788905, Length=330, Percent_Identity=39.6969696969697, Blast_Score=235, Evalue=4e-63,
Organism=Escherichia coli, GI87082152, Length=329, Percent_Identity=39.5136778115502, Blast_Score=214, Evalue=2e-56,
Organism=Escherichia coli, GI87081872, Length=324, Percent_Identity=37.962962962963, Blast_Score=213, Evalue=2e-56,
Organism=Escherichia coli, GI1787583, Length=456, Percent_Identity=31.140350877193, Blast_Score=201, Evalue=8e-53,
Organism=Escherichia coli, GI87081858, Length=468, Percent_Identity=26.4957264957265, Blast_Score=152, Evalue=7e-38,
Organism=Escherichia coli, GI1789828, Length=234, Percent_Identity=36.7521367521368, Blast_Score=129, Evalue=4e-31,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR020441
- InterPro:   IPR009057
- InterPro:   IPR002197
- InterPro:   IPR001610
- InterPro:   IPR000014
- InterPro:   IPR013767
- InterPro:   IPR002078 [H]

Pfam domain/function: PF02954 HTH_8; PF00989 PAS; PF00158 Sigma54_activat [H]

EC number: NA

Molecular weight: Translated: 63110; Mature: 62979

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: PS50112 PAS ; PS00675 SIGMA54_INTERACT_1 ; PS00676 SIGMA54_INTERACT_2 ; PS00688 SIGMA54_INTERACT_3 ; PS50045 SIGMA54_INTERACT_4

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAISHGTSLVLGCHQTVQEAIQLFSEHGMAAVDVVDEHGRSVGRCTWRMLLRAIAKEMDR
CCCCCCCHHEEHHHHHHHHHHHHHHHCCCEEEEHHHHHCCHHHHHHHHHHHHHHHHHHHH
MALIGDVLAAFSMDGKTEPKEDSMETSDGEGDSGAAAELERLRRELEETHRLAETMKTVL
HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
DAAYEGVVVVDGNGMVREINRAYCQFLGIRREDAIGKHVTEVIENTRLHICVQSGIPERG
HHHHCCEEEECCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCEEEEEEECCCCCCC
YIQKIYGQPMVVHRIPIWRDGKVIGAVGMLIFQGVSEVYAIFQRLQELSREASRKEKNEA
HHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EASKQEAVASAAVGVERIIGRHPTIAAVKQMIRRAARVPSTVLITGESGTGKEVVARAIH
HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHH
EAGAHADGPFVSVNCAAIPEALLEAELFGYEDGAFTGAKKGGKPGKFQLAHGGTLFLDEI
HHCCCCCCCEEEEEHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEECCCEEEEHHH
GDMPLAMQAKILRVLEEKKVEKVGGLSETEVDVRIIAATNKPLEEMVRDGTFREDLFYRL
CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCHHHHHHCCCHHHHHHHEE
NIIRIHLPPLRERKTDIPALLAHHMERLCRQFGVVSKSFAKEAMEVLINYSWPGNIRELV
EEEEEECCCCHHHCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCCCCHHHHH
NVVEWLISMVEGENIEREHLPAYLSTIHPSVTPMPDGGANIADQWKEIVYQSERERIAAA
HHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
LVAANGNKAEAARRLGIHRSTLYEKLKKYGF
HHHCCCCHHHHHHHHCCHHHHHHHHHHHCCC
>Mature Secondary Structure 
AISHGTSLVLGCHQTVQEAIQLFSEHGMAAVDVVDEHGRSVGRCTWRMLLRAIAKEMDR
CCCCCCHHEEHHHHHHHHHHHHHHHCCCEEEEHHHHHCCHHHHHHHHHHHHHHHHHHHH
MALIGDVLAAFSMDGKTEPKEDSMETSDGEGDSGAAAELERLRRELEETHRLAETMKTVL
HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
DAAYEGVVVVDGNGMVREINRAYCQFLGIRREDAIGKHVTEVIENTRLHICVQSGIPERG
HHHHCCEEEECCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCEEEEEEECCCCCCC
YIQKIYGQPMVVHRIPIWRDGKVIGAVGMLIFQGVSEVYAIFQRLQELSREASRKEKNEA
HHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EASKQEAVASAAVGVERIIGRHPTIAAVKQMIRRAARVPSTVLITGESGTGKEVVARAIH
HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHH
EAGAHADGPFVSVNCAAIPEALLEAELFGYEDGAFTGAKKGGKPGKFQLAHGGTLFLDEI
HHCCCCCCCEEEEEHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEECCCEEEEHHH
GDMPLAMQAKILRVLEEKKVEKVGGLSETEVDVRIIAATNKPLEEMVRDGTFREDLFYRL
CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCHHHHHHCCCHHHHHHHEE
NIIRIHLPPLRERKTDIPALLAHHMERLCRQFGVVSKSFAKEAMEVLINYSWPGNIRELV
EEEEEECCCCHHHCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCCCCHHHHH
NVVEWLISMVEGENIEREHLPAYLSTIHPSVTPMPDGGANIADQWKEIVYQSERERIAAA
HHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
LVAANGNKAEAARRLGIHRSTLYEKLKKYGF
HHHCCCCHHHHHHHHCCHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA