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The map label for this gene is dapB2 [H]

Identifier: 13476581

GI number: 13476581

Start: 6559005

End: 6559799

Strand: Direct

Name: dapB2 [H]

Synonym: mlr7948

Alternate gene names: 13476581

Gene position: 6559005-6559799 (Clockwise)

Preceding gene: 13476580

Following gene: 13476582

Centisome position: 93.22

GC content: 67.04

Gene sequence:

>795_bases
GTGGAAATAGCTGAAATCATGGCGCAACCGCCGATCAGGATCGCCATCGCCGGGGCGCTGGGCCGCATGGGCCGCCAGAT
GGTGGAGGCTGTGCAGGCAGATCCGCGGCTGGCACTTGCCGCCCGCTTTCACCGCCCAGATAGTGTCGGCGACGGGCTGG
TGAGCCGCGACGAGGCGCTTGCCATGGCCGATGTGGTGATCGATTTCACCACGCCGGCGGCCTCGGCCGATCTGGCGAGG
GTTAGCGCAAACCGGGGCGGTCCCGCTTTGGTGATCGGCTCTACCGGTTTCGATGCCGCCGAACTGGCTGATATAGCGGA
TGCCGCGAAAACAGTTCCCATCGTCCGCTCCGGCAGTTTTTCGCTCGGGCTCAACATGCTGGTCGGACTGGTCGAGCAGG
CGGCGAGAGCGTTCGCGCCCGAAGATTGGGACGCTGAGATTTTCGAGGCGCATCATCGCCACAAGATCGACGCGCCGTCG
GGCACCGCATTGATGCTGGGACAGGCCGTCGCCGGTGGACGCGGCGCCGAACTGGACGCGGTCGCAAGGCGCGTCCGCGA
CGGCGTCACCGGCGCGCGGCCGCCCGGCGAGATCGGCTTTGCGGTGGTTCGCGGGGGCAGCATCGTCGGCGAACACAGCG
TCAGCTTCTGTGCCGAAGGCGAGCTTGTTACCTTGTCGCACGCTGCCGGCGATCGCATCATGTTCGCCCGTGGCGCCATC
GCCGCGGCACTCTGGGTGTCGGGACGCCCGCCCGGCGAATACGATATGCGCGACGTGCTTGGGTTTGACCGCTGA

Upstream 100 bases:

>100_bases
CCGCGTTCCAGCAGATGTCGTGGCCGGGCGCACAGGCGGCACAGGGCAGGGCGCCTCGGCCGGACGTGCGCGTCGACATC
GGCGCGCGCATGCGCGGCAT

Downstream 100 bases:

>100_bases
ACCTGGCGCGGCGTACATTTTTCACGGCGCCGCGACTGCCCGCCGGCCGCGGCTTACTGATCCGTAAGCCTTGCCGTCAT
TTTCGGCTTCACCTTGAAAG

Product: dihydrodipicolinate reductase

Products: NA

Alternate protein names: DHPR 2 [H]

Number of amino acids: Translated: 264; Mature: 264

Protein sequence:

>264_residues
MEIAEIMAQPPIRIAIAGALGRMGRQMVEAVQADPRLALAARFHRPDSVGDGLVSRDEALAMADVVIDFTTPAASADLAR
VSANRGGPALVIGSTGFDAAELADIADAAKTVPIVRSGSFSLGLNMLVGLVEQAARAFAPEDWDAEIFEAHHRHKIDAPS
GTALMLGQAVAGGRGAELDAVARRVRDGVTGARPPGEIGFAVVRGGSIVGEHSVSFCAEGELVTLSHAAGDRIMFARGAI
AAALWVSGRPPGEYDMRDVLGFDR

Sequences:

>Translated_264_residues
MEIAEIMAQPPIRIAIAGALGRMGRQMVEAVQADPRLALAARFHRPDSVGDGLVSRDEALAMADVVIDFTTPAASADLAR
VSANRGGPALVIGSTGFDAAELADIADAAKTVPIVRSGSFSLGLNMLVGLVEQAARAFAPEDWDAEIFEAHHRHKIDAPS
GTALMLGQAVAGGRGAELDAVARRVRDGVTGARPPGEIGFAVVRGGSIVGEHSVSFCAEGELVTLSHAAGDRIMFARGAI
AAALWVSGRPPGEYDMRDVLGFDR
>Mature_264_residues
MEIAEIMAQPPIRIAIAGALGRMGRQMVEAVQADPRLALAARFHRPDSVGDGLVSRDEALAMADVVIDFTTPAASADLAR
VSANRGGPALVIGSTGFDAAELADIADAAKTVPIVRSGSFSLGLNMLVGLVEQAARAFAPEDWDAEIFEAHHRHKIDAPS
GTALMLGQAVAGGRGAELDAVARRVRDGVTGARPPGEIGFAVVRGGSIVGEHSVSFCAEGELVTLSHAAGDRIMFARGAI
AAALWVSGRPPGEYDMRDVLGFDR

Specific function: Biosynthesis of diaminopimelate and lysine from aspartate semialdehyde; second step. [C]

COG id: COG0289

COG function: function code E; Dihydrodipicolinate reductase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the dihydrodipicolinate reductase family [H]

Homologues:

Organism=Escherichia coli, GI1786214, Length=274, Percent_Identity=42.7007299270073, Blast_Score=182, Evalue=2e-47,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022663
- InterPro:   IPR000846
- InterPro:   IPR022664
- InterPro:   IPR011770
- InterPro:   IPR016040 [H]

Pfam domain/function: PF05173 DapB_C; PF01113 DapB_N [H]

EC number: =1.3.1.26 [H]

Molecular weight: Translated: 27414; Mature: 27414

Theoretical pI: Translated: 4.99; Mature: 4.99

Prosite motif: PS01298 DAPB

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEIAEIMAQPPIRIAIAGALGRMGRQMVEAVQADPRLALAARFHRPDSVGDGLVSRDEAL
CCHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHCCCCEEEHHHCCCCCCCCCCCCCCHHHH
AMADVVIDFTTPAASADLARVSANRGGPALVIGSTGFDAAELADIADAAKTVPIVRSGSF
HHHHEEEECCCCCCCHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCEEECCCH
SLGLNMLVGLVEQAARAFAPEDWDAEIFEAHHRHKIDAPSGTALMLGQAVAGGRGAELDA
HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCEEEEEHHHCCCCCCCHHH
VARRVRDGVTGARPPGEIGFAVVRGGSIVGEHSVSFCAEGELVTLSHAAGDRIMFARGAI
HHHHHHHCCCCCCCCCCCCEEEEECCCEECCCCHHEECCCCEEEEECCCCCEEEEEHHHH
AAALWVSGRPPGEYDMRDVLGFDR
EEHEEECCCCCCCCCHHHHCCCCC
>Mature Secondary Structure
MEIAEIMAQPPIRIAIAGALGRMGRQMVEAVQADPRLALAARFHRPDSVGDGLVSRDEAL
CCHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHCCCCEEEHHHCCCCCCCCCCCCCCHHHH
AMADVVIDFTTPAASADLARVSANRGGPALVIGSTGFDAAELADIADAAKTVPIVRSGSF
HHHHEEEECCCCCCCHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCEEECCCH
SLGLNMLVGLVEQAARAFAPEDWDAEIFEAHHRHKIDAPSGTALMLGQAVAGGRGAELDA
HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCEEEEEHHHCCCCCCCHHH
VARRVRDGVTGARPPGEIGFAVVRGGSIVGEHSVSFCAEGELVTLSHAAGDRIMFARGAI
HHHHHHHCCCCCCCCCCCCEEEEECCCEECCCCHHEECCCCEEEEECCCCCEEEEEHHHH
AAALWVSGRPPGEYDMRDVLGFDR
EEHEEECCCCCCCCCHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11214968 [H]